Conservation of cofitness between CSW01_06085 and CSW01_01350 in Vibrio cholerae E7946 ATCC 55056

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_06085 urocanate hydratase 1.0 CSW01_01350 polysaccharide biosynthesis protein 0.86 12
Shewanella oneidensis MR-1 0.79 SO0097 hutU urocanate hydratase (NCBI ptt file) 0.49 SO3171 polysaccharide biosynthesis protein (NCBI ptt file) 0.30 26
Paraburkholderia sabiae LMG 24235 0.77 QEN71_RS23505 urocanate hydratase 0.29 QEN71_RS25590 nucleoside-diphosphate sugar epimerase/dehydratase low > 153
Pseudomonas aeruginosa PA14 0.76 IKLFDK_28020 urocanate hydratase 0.43 IKLFDK_16005 nucleotide sugar epimerase/dehydratase WbpM low > 98
Pseudomonas aeruginosa MRSN321 0.76 DY961_RS11325 hutU;go_function=urocanate urocanate hydratase 0.43 DY961_RS01195 nucleoside-diphosphate sugar epimerase/dehydratase — —
Pseudomonas aeruginosa PUPa3 0.76 DQ20_RS50770 hutU;go_function=urocanate urocanate hydratase 0.43 DQ20_RS34360 nucleoside-diphosphate sugar epimerase/dehydratase low > 101
Pseudomonas sp. BP01 0.76 JOY50_RS09520 hutU urocanate hydratase 0.43 JOY50_RS16050 nucleoside-diphosphate sugar epimerase/dehydratase low > 84
Paraburkholderia graminis OAS925 0.76 ABIE53_001731 urocanate hydratase 0.28 ABIE53_001163 FlaA1/EpsC-like NDP-sugar epimerase low > 113
Pseudomonas sp. SVBP6 0.76 COO64_RS13410 hutU urocanate hydratase 0.40 COO64_RS06660 nucleoside-diphosphate sugar epimerase/dehydratase low > 93
Pseudomonas putida KT2440 0.76 PP_5033 Urocanate hydratase 0.42 PP_1805 Polysaccharide biosynthesis protein low > 96
Pseudomonas sp. DMC3 0.76 GFF4062 Urocanate hydratase 0.43 GFF4653 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase low > 89
Burkholderia phytofirmans PsJN 0.76 BPHYT_RS07565 urocanate hydratase 0.30 BPHYT_RS04385 nucleoside-diphosphate sugar oxidoreductase low > 109
Pseudomonas fluorescens FW300-N2E3 0.76 AO353_12250 Urocanate hydratase (EC 4.2.1.49) (from data) 0.42 AO353_01970 hypothetical protein low > 101
Cupriavidus basilensis FW507-4G11 0.76 RR42_RS14645 urocanate hydratase 0.44 RR42_RS15825 capsular biosynthesis protein low > 128
Pseudomonas lactucae CFBP13502 0.76 GEMAOFIL_00568 Urocanate hydratase 0.44 GEMAOFIL_01779 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase low > 96
Paraburkholderia bryophila 376MFSha3.1 0.76 H281DRAFT_04871 urocanate hydratase 0.28 H281DRAFT_04851 NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.76 Psyr_4828 urocanate hydratase 0.41 Psyr_3636 Polysaccharide biosynthesis protein CapD low > 86
Pseudomonas syringae pv. syringae B728a 0.76 Psyr_4828 urocanate hydratase 0.41 Psyr_3636 Polysaccharide biosynthesis protein CapD low > 86
Pseudomonas sp. S08-1 0.76 OH686_16745 urocanate hydratase 0.45 OH686_20915 nucleotide sugar epimerase/dehydratase WbpM low > 80
Pseudomonas fluorescens FW300-N2C3 0.75 AO356_09630 Urocanate hydratase (EC 4.2.1.49) (from data) 0.42 AO356_03345 hypothetical protein low > 104
Pseudomonas simiae WCS417 0.75 PS417_01720 Urocanate hydratase (EC 4.2.1.49) (from data) 0.41 PS417_08190 membrane protein low > 88
Pseudomonas fluorescens FW300-N2E2 0.75 Pf6N2E2_3805 Urocanate hydratase (EC 4.2.1.49) (from data) 0.42 Pf6N2E2_2506 nucleotide sugar epimerase/dehydratase WbpM low > 103
Pseudomonas fluorescens GW456-L13 0.75 PfGW456L13_326 Urocanate hydratase (EC 4.2.1.49) (from data) 0.42 PfGW456L13_2191 nucleotide sugar epimerase/dehydratase WbpM low > 87
Pseudomonas sp. RS175 0.75 PFR28_04965 Urocanate hydratase 0.42 PFR28_00932 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase low > 88
Pseudomonas fluorescens SBW25-INTG 0.75 PFLU_RS01775 urocanate hydratase 0.42 PFLU_RS08190 polysaccharide biosynthesis protein low > 109
Pseudomonas fluorescens SBW25 0.75 PFLU_RS01775 urocanate hydratase 0.42 PFLU_RS08190 polysaccharide biosynthesis protein low > 109
Sphingomonas koreensis DSMZ 15582 0.75 Ga0059261_3961 Urocanate hydratase (EC 4.2.1.49) (from data) 0.22 Ga0059261_4092 Predicted nucleoside-diphosphate sugar epimerases low > 68
Pseudomonas segetis P6 0.75 ACVTMO_RS19645 hutU urocanate hydratase 0.41 ACVTMO_RS14300 polysaccharide biosynthesis protein low > 75
Enterobacter asburiae PDN3 0.74 EX28DRAFT_2220 urocanate hydratase (EC 4.2.1.49) 0.49 EX28DRAFT_0519 Predicted nucleoside-diphosphate sugar epimerases low > 76
Dyella japonica UNC79MFTsu3.2 0.74 ABZR86_RS07755 urocanate hydratase 0.29 ABZR86_RS05540 nucleoside-diphosphate sugar epimerase/dehydratase low > 74
Rhodanobacter sp. FW510-T8 0.73 OKGIIK_08350 hutU urocanate hydratase 0.29 OKGIIK_07240 flaA1 polysaccharide biosynthesis protein low > 53
Rhodanobacter denitrificans FW104-10B01 0.73 LRK54_RS16320 urocanate hydratase 0.29 LRK54_RS18060 polysaccharide biosynthesis protein low > 59
Rhodanobacter denitrificans MT42 0.73 LRK55_RS16070 urocanate hydratase 0.29 LRK55_RS17915 nucleoside-diphosphate sugar epimerase/dehydratase low > 63
Rhodanobacter sp000427505 FW510-R12 0.72 LRK53_RS12480 urocanate hydratase 0.30 LRK53_RS11300 polysaccharide biosynthesis protein low > 59
Dickeya dadantii 3937 0.72 DDA3937_RS14990 urocanate hydratase 0.77 DDA3937_RS03410 polysaccharide biosynthesis protein low > 74
Bosea sp. OAE506 0.72 ABIE41_RS23655 urocanate hydratase 0.17 ABIE41_RS03855 nucleoside-diphosphate sugar epimerase/dehydratase — —
Phaeobacter inhibens DSM 17395 0.72 PGA1_c36320 Urocanate hydratase (EC 4.2.1.49) (from data) 0.31 PGA1_65p00170 putative capsular polysaccharide biosynthesis protein low > 62
Azospirillum sp. SherDot2 0.72 MPMX19_04936 Urocanate hydratase 0.26 MPMX19_01807 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase — —
Lysobacter sp. OAE881 0.72 ABIE51_RS06295 urocanate hydratase 0.26 ABIE51_RS09370 nucleoside-diphosphate sugar epimerase/dehydratase low > 62
Xanthomonas campestris pv. campestris strain 8004 0.71 Xcc-8004.3298.1 Urocanate hydratase (EC 4.2.1.49) 0.28 Xcc-8004.2386.1 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) low > 74
Dickeya dianthicola 67-19 0.71 HGI48_RS15085 urocanate hydratase 0.77 HGI48_RS03510 polysaccharide biosynthesis protein low > 71
Ralstonia sp. UNC404CL21Col 0.70 ABZR87_RS01030 urocanate hydratase 0.40 ABZR87_RS08730 nucleoside-diphosphate sugar epimerase/dehydratase low > 80
Variovorax sp. OAS795 0.70 ABID97_RS03425 urocanate hydratase 0.36 ABID97_RS02200 nucleoside-diphosphate sugar epimerase/dehydratase low > 91
Dickeya dianthicola ME23 0.70 DZA65_RS15830 urocanate hydratase 0.77 DZA65_RS03625 polysaccharide biosynthesis protein low > 75
Ralstonia solanacearum PSI07 0.69 RPSI07_RS11910 urocanate hydratase 0.35 RPSI07_RS04445 polysaccharide biosynthesis protein low > 81
Hydrogenophaga sp. GW460-11-11-14-LB1 0.69 GFF3590 Urocanate hydratase (EC 4.2.1.49) 0.42 GFF1865 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) low > 90
Acidovorax sp. GW101-3H11 0.69 Ac3H11_2557 Urocanate hydratase (EC 4.2.1.49) (from data) 0.27 Ac3H11_1539 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) low > 79
Ralstonia solanacearum UW163 0.68 UW163_RS08230 urocanate hydratase 0.35 UW163_RS19975 polysaccharide biosynthesis protein — —
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS05395 urocanate hydratase 0.35 RALBFv3_RS19155 polysaccharide biosynthesis protein low > 76
Ralstonia solanacearum GMI1000 0.68 RS_RS13255 urocanate hydratase 0.35 RS_RS21965 polysaccharide biosynthesis protein low > 80
Castellaniella sp019104865 MT123 0.68 ABCV34_RS12785 urocanate hydratase 0.27 ABCV34_RS13035 nucleoside-diphosphate sugar epimerase/dehydratase low > 48
Pontibacter actiniarum KMM 6156, DSM 19842 0.58 CA264_08875 urocanate hydratase 0.25 CA264_12325 polysaccharide biosynthesis protein low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.28 CA265_RS22275 urocanate hydratase 0.26 CA265_RS19185 polysaccharide biosynthesis protein low > 88
Cellulophaga baltica 18 0.27 M666_RS07215 urocanate hydratase 0.29 M666_RS12345 nucleoside-diphosphate sugar epimerase/dehydratase low > 67
Phocaeicola dorei CL03T12C01 0.27 ABI39_RS01810 urocanate hydratase 0.25 ABI39_RS13770 polysaccharide biosynthesis protein low > 72
Bacteroides thetaiotaomicron VPI-5482 0.26 BT2694 putative urocanate hydratase (NCBI ptt file) 0.24 BT0378 capsular polysaccharide biosynthesis protein capD (NCBI ptt file) low > 81
Shewanella amazonensis SB2B 0.26 Sama_1632 Urocanate hydratase (EC 4.2.1.49) (from data) 0.51 Sama_2244 polysaccharide biosynthesis protein (RefSeq) low > 62
Parabacteroides merdae CL09T00C40 0.26 HMPREF1078_RS11595 urocanate hydratase 0.25 HMPREF1078_RS01480 nucleoside-diphosphate sugar epimerase/dehydratase low > 61

Not shown: 28 genomes with orthologs for CSW01_06085 only; 11 genomes with orthologs for CSW01_01350 only