Conservation of cofitness between CSW01_18660 and CSW01_00635 in Vibrio cholerae E7946 ATCC 55056

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_18660 glycerate kinase 1.0 CSW01_00635 diaminopimelate decarboxylase 0.52 3
Serratia liquefaciens MT49 0.55 IAI46_05265 glycerate kinase 0.19 IAI46_20520 diaminopimelate decarboxylase low > 87
Shewanella loihica PV-4 0.53 Shew_2534 glycerate kinase (RefSeq) 0.68 Shew_0322 diaminopimelate decarboxylase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.52 Sama_3228 glycerate kinase (RefSeq) 0.64 Sama_3250 diaminopimelate decarboxylase (RefSeq) low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF4840 Glycerate kinase (EC 2.7.1.31) 0.19 GFF1323 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 78
Escherichia fergusonii Becca 0.50 EFB2_03548 Glycerate 3-kinase 0.18 EFB2_01045 Diaminopimelate decarboxylase low > 86
Enterobacter asburiae PDN3 0.50 EX28DRAFT_2867 glycerate kinase 0.18 EX28DRAFT_2916 diaminopimelate decarboxylase low > 76
Escherichia coli ECRC99 0.50 KEDOAH_20080 glxK glycerate 3-kinase 0.18 KEDOAH_08185 lysA diaminopimelate decarboxylase — —
Escherichia coli ECRC98 0.50 JDDGAC_11535 glxK glycerate 3-kinase 0.18 JDDGAC_23610 lysA diaminopimelate decarboxylase low > 87
Escherichia coli ECRC102 0.50 NIAGMN_05940 glxK glycerate 3-kinase 0.18 NIAGMN_17715 lysA diaminopimelate decarboxylase 0.51 37
Escherichia coli BL21 0.50 ECD_00464 glycerate kinase II 0.18 ECD_02686 diaminopimelate decarboxylase, PLP-binding low > 61
Escherichia coli ECRC101 0.50 MCAODC_27105 glxK glycerate 3-kinase 0.18 MCAODC_10470 lysA diaminopimelate decarboxylase low > 87
Escherichia coli ECRC100 0.50 OKFHMN_07885 glxK glycerate 3-kinase 0.18 OKFHMN_19945 lysA diaminopimelate decarboxylase low > 79
Escherichia coli Nissle 1917 0.50 ECOLIN_RS02985 glycerate 3-kinase 0.18 ECOLIN_RS15930 diaminopimelate decarboxylase low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_03167 Glycerate 3-kinase 0.18 OHPLBJKB_00891 Diaminopimelate decarboxylase low > 74
Escherichia coli BW25113 0.50 b0514 glxK glycerate kinase II (NCBI) 0.18 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) low > 76
Escherichia coli ECOR27 0.50 NOLOHH_00875 glxK glycerate 3-kinase 0.18 NOLOHH_11830 lysA diaminopimelate decarboxylase low > 76
Enterobacter sp. TBS_079 0.50 MPMX20_03656 Glycerate 2-kinase 0.19 MPMX20_03705 Diaminopimelate decarboxylase low > 85
Escherichia coli ECOR38 0.50 HEPCGN_06530 glxK glycerate 3-kinase 0.18 HEPCGN_19565 lysA diaminopimelate decarboxylase low > 88
Klebsiella pneumoniae MKP103 0.49 KDGMDA_03350 glycerate kinase 0.19 KDGMDA_03935 diaminopimelate decarboxylase low > 95
Escherichia coli ECRC62 0.49 BNILDI_22305 glxK glycerate 3-kinase 0.18 BNILDI_10310 lysA diaminopimelate decarboxylase low > 75
Klebsiella michiganensis M5al 0.49 BWI76_RS22820 glycerate kinase 0.18 BWI76_RS23360 diaminopimelate decarboxylase low > 92
Erwinia amylovora T8 0.48 OLJFJH_09230 glycerate kinase 0.19 OLJFJH_08880 diaminopimelate decarboxylase low > 58
Rahnella sp. WP5 0.48 EX31_RS07975 glycerate kinase 0.22 EX31_RS02420 type III PLP-dependent enzyme 0.36 77
Pantoea agglomerans CFBP13505 P0401 0.48 PagCFBP13505_RS16865 glycerate kinase 0.17 PagCFBP13505_RS17110 diaminopimelate decarboxylase low > 74
Pantoea sp. MT58 0.47 IAI47_04105 glycerate kinase 0.17 IAI47_03860 diaminopimelate decarboxylase low > 76
Shewanella sp. ANA-3 0.47 Shewana3_2685 glycerate kinase (RefSeq) 0.70 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.47 SO1770 glycerate kinase, putative (NCBI ptt file) 0.69 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) low > 76
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_3115 Glycerate kinase 0.66 Psyr_0182 diaminopimelate decarboxylase — —
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_3115 Glycerate kinase 0.66 Psyr_0182 diaminopimelate decarboxylase — —
Pectobacterium carotovorum WPP14 0.46 HER17_RS04100 glycerate kinase 0.16 HER17_RS03710 diaminopimelate decarboxylase low > 75
Dickeya dadantii 3937 0.46 DDA3937_RS17030 glycerate kinase 0.22 DDA3937_RS20740 type III PLP-dependent enzyme — —
Erwinia tracheiphila HP pepo 2.2 0.46 IJEDHG_17360 glycerate kinase 0.17 IJEDHG_17035 lysA diaminopimelate decarboxylase low > 61
Erwinia tracheiphila SCR3 0.46 LU632_RS06335 glycerate kinase 0.17 LU632_RS06040 lysA diaminopimelate decarboxylase low > 73
Pseudomonas fluorescens FW300-N2E3 0.46 AO353_26900 glycerate kinase 0.65 AO353_09035 diaminopimelate decarboxylase — —
Pseudomonas sp. DMC3 0.46 GFF2931 Glycerate 2-kinase 0.66 GFF367 Diaminopimelate decarboxylase — —
Dickeya dianthicola ME23 0.46 DZA65_RS18160 glycerate kinase 0.21 DZA65_RS00505 type III PLP-dependent enzyme low > 75
Dickeya dianthicola 67-19 0.46 HGI48_RS17085 glycerate kinase 0.21 HGI48_RS00505 type III PLP-dependent enzyme — —
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_2941 Glycerate kinase (EC 2.7.1.31) 0.66 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 87
Pseudomonas orientalis W4I3 0.45 QF045_RS15980 glycerate kinase 0.64 QF045_RS01945 diaminopimelate decarboxylase low > 93
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_460 Glycerate kinase (EC 2.7.1.31) 0.66 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Pseudomonas fluorescens SBW25 0.44 PFLU_RS14645 glycerate kinase 0.64 PFLU_RS29265 diaminopimelate decarboxylase low > 109
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS14645 glycerate kinase 0.64 PFLU_RS29265 diaminopimelate decarboxylase — —
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_22870 glycerate kinase 0.66 AO356_12740 diaminopimelate decarboxylase — —
Pseudomonas simiae WCS417 0.44 PS417_13970 glycerate kinase 0.64 PS417_27580 diaminopimelate decarboxylase — —
Pseudomonas sp. RS175 0.44 PFR28_02469 Glycerate 2-kinase 0.66 PFR28_04375 Diaminopimelate decarboxylase — —
Pseudomonas sp. S08-1 0.44 OH686_04780 Glycerate kinase 0.64 OH686_13800 diaminopimelate decarboxylase low > 80
Pseudomonas lactucae CFBP13502 0.44 GEMAOFIL_02945 Glycerate 2-kinase 0.65 GEMAOFIL_05654 Diaminopimelate decarboxylase low > 96
Pseudomonas segetis P6 0.43 MPMX49_03492 Glycerate 3-kinase 0.65 MPMX49_04533 Diaminopimelate decarboxylase low > 75
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_4998 Glycerate kinase (EC 2.7.1.31) 0.66 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Pseudomonas putida KT2440 0.42 PP_3178 glycerate kinase 0.65 PP_5227 diaminopimelate decarboxylase 0.16 86
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS12190 glycerate kinase 0.59 QEN71_RS28080 diaminopimelate decarboxylase low > 153
Pseudomonas aeruginosa PA14 0.42 IKLFDK_04815 glycerate kinase 0.67 IKLFDK_27065 diaminopimelate decarboxylase low > 98
Pseudomonas aeruginosa PUPa3 0.42 DQ20_RS45585 glycerate kinase 0.67 DQ20_RS49855 lysA;go_function=diaminopimelate diaminopimelate decarboxylase low > 101
Acinetobacter radioresistens SK82 0.42 MPMX26_00368 Glycerate 2-kinase 0.61 MPMX26_02232 Diaminopimelate decarboxylase — —
Pseudomonas aeruginosa MRSN321 0.42 DY961_RS07200 glycerate kinase 0.67 DY961_RS12270 lysA;go_function=diaminopimelate diaminopimelate decarboxylase low > 100
Pseudomonas sp. BP01 0.41 JOY50_RS26670 glycerate kinase 0.62 JOY50_RS22595 lysA diaminopimelate decarboxylase low > 84
Pseudomonas sp. SVBP6 0.41 COO64_RS23775 glycerate kinase 0.63 COO64_RS01255 lysA diaminopimelate decarboxylase low > 93
Acinetobacter baumannii LAC-4 0.40 RR41_RS04375 glycerate kinase 0.62 RR41_RS04435 diaminopimelate decarboxylase low > 55
Bacteroides thetaiotaomicron VPI-5482 0.36 BT1437 conserved hypothetical protein (NCBI ptt file) 0.31 BT1374 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) low > 81
Phocaeicola vulgatus CL09T03C04 0.35 HMPREF1058_RS12910 glycerate kinase 0.32 HMPREF1058_RS06195 diaminopimelate decarboxylase low > 67
Parabacteroides merdae CL09T00C40 0.35 HMPREF1078_RS08645 glycerate kinase 0.32 HMPREF1078_RS13545 diaminopimelate decarboxylase low > 61
Bacteroides stercoris CC31F 0.34 HMPREF1181_RS16785 glycerate kinase 0.31 HMPREF1181_RS11050 diaminopimelate decarboxylase low > 56
Cellulophaga baltica 18 0.33 M666_RS15730 glycerate kinase 0.24 M666_RS19040 diaminopimelate decarboxylase low > 67
Mucilaginibacter yixingensis YX-36 DSM 26809 0.33 ABZR88_RS00815 glycerate kinase 0.31 ABZR88_RS10180 diaminopimelate decarboxylase — —
Bacteroides ovatus ATCC 8483 0.32 BACOVA_02041 glycerate kinase 0.31 BACOVA_00215 diaminopimelate decarboxylase low > 96
Synechocystis sp000284455 PCC 6803 0.26 SGL_RS06360 glycerate kinase 0.21 SGL_RS16710 diaminopimelate decarboxylase — —
Herbaspirillum seropedicae SmR1 0.25 HSERO_RS10055 glycerate kinase 0.56 HSERO_RS00950 diaminopimelate decarboxylase — —
Burkholderia phytofirmans PsJN 0.24 BPHYT_RS09440 glycerate kinase 0.57 BPHYT_RS17930 diaminopimelate decarboxylase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.24 H281DRAFT_00894 glycerate kinase 0.56 H281DRAFT_05606 diaminopimelate decarboxylase — —
Paraburkholderia graminis OAS925 0.24 ABIE53_002112 glycerate kinase 0.57 ABIE53_003749 diaminopimelate decarboxylase low > 113
Cupriavidus basilensis FW507-4G11 0.22 RR42_RS23230 glycerate kinase 0.57 RR42_RS19050 diaminopimelate decarboxylase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.21 Echvi_4031 glycerate kinase 0.24 Echvi_1295 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) low > 79
Mycobacterium tuberculosis H37Rv 0.15 Rv2205c Conserved hypothetical protein 0.20 Rv1293 Diaminopimelate decarboxylase LysA (DAP decarboxylase) — —

Not shown: 2 genomes with orthologs for CSW01_18660 only; 47 genomes with orthologs for CSW01_00635 only