Conservation of cofitness between CSW01_05555 and CSW01_00635 in Vibrio cholerae E7946 ATCC 55056

67 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_05555 oligopeptide ABC transporter permease OppC 1.0 CSW01_00635 diaminopimelate decarboxylase 0.53 3
Serratia liquefaciens MT49 0.70 IAI46_14195 oligopeptide ABC transporter permease OppC 0.19 IAI46_20520 diaminopimelate decarboxylase low > 87
Pantoea agglomerans CFBP13505 P0401 0.69 PagCFBP13505_RS02920 oligopeptide ABC transporter permease OppC 0.17 PagCFBP13505_RS17110 diaminopimelate decarboxylase low > 74
Enterobacter asburiae PDN3 0.68 EX28DRAFT_0870 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 0.18 EX28DRAFT_2916 diaminopimelate decarboxylase low > 76
Enterobacter sp. TBS_079 0.68 MPMX20_02585 Oligopeptide transport system permease protein OppC 0.19 MPMX20_03705 Diaminopimelate decarboxylase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF2744 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) 0.19 GFF1323 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 78
Pantoea sp. MT58 0.66 IAI47_09080 oligopeptide ABC transporter permease OppC 0.17 IAI47_03860 diaminopimelate decarboxylase low > 76
Klebsiella michiganensis M5al 0.66 BWI76_RS17230 peptide ABC transporter permease 0.18 BWI76_RS23360 diaminopimelate decarboxylase low > 92
Rahnella sp. WP5 0.66 EX31_RS10055 oligopeptide ABC transporter permease OppC 0.22 EX31_RS02420 type III PLP-dependent enzyme low > 89
Klebsiella pneumoniae MKP103 0.65 KDGMDA_24465 oligopeptide ABC transporter permease OppC 0.19 KDGMDA_03935 diaminopimelate decarboxylase low > 95
Erwinia tracheiphila HP pepo 2.2 0.65 IJEDHG_22745 oppC oligopeptide ABC transporter permease OppC 0.17 IJEDHG_17035 lysA diaminopimelate decarboxylase — —
Erwinia tracheiphila SCR3 0.65 LU632_RS12870 oppC oligopeptide ABC transporter permease OppC 0.17 LU632_RS06040 lysA diaminopimelate decarboxylase low > 73
Dickeya dadantii 3937 0.65 DDA3937_RS10385 oligopeptide ABC transporter permease OppC 0.22 DDA3937_RS20740 type III PLP-dependent enzyme low > 74
Dickeya dianthicola ME23 0.65 DZA65_RS10870 oligopeptide ABC transporter permease OppC 0.21 DZA65_RS00505 type III PLP-dependent enzyme low > 75
Dickeya dianthicola 67-19 0.65 HGI48_RS10390 oligopeptide ABC transporter permease OppC 0.21 HGI48_RS00505 type III PLP-dependent enzyme low > 71
Escherichia coli BW25113 0.65 b1245 oppC oligopeptide transporter subunit (NCBI) 0.18 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) low > 76
Escherichia coli ECRC101 0.65 MCAODC_21620 oppC oligopeptide ABC transporter permease OppC 0.18 MCAODC_10470 lysA diaminopimelate decarboxylase low > 87
Escherichia coli BL21 0.65 ECD_01219 oligopeptide ABC transporter permease 0.18 ECD_02686 diaminopimelate decarboxylase, PLP-binding low > 61
Escherichia coli ECRC100 0.65 OKFHMN_28640 oppC oligopeptide ABC transporter permease OppC 0.18 OKFHMN_19945 lysA diaminopimelate decarboxylase — —
Escherichia coli ECRC99 0.65 KEDOAH_25635 oppC oligopeptide ABC transporter permease OppC 0.18 KEDOAH_08185 lysA diaminopimelate decarboxylase — —
Escherichia coli Nissle 1917 0.65 ECOLIN_RS07520 oligopeptide ABC transporter permease OppC 0.18 ECOLIN_RS15930 diaminopimelate decarboxylase low > 55
Escherichia coli ECRC102 0.65 NIAGMN_27595 oppC oligopeptide ABC transporter permease OppC 0.18 NIAGMN_17715 lysA diaminopimelate decarboxylase low > 80
Escherichia coli ECOR27 0.65 NOLOHH_20410 oppC oligopeptide ABC transporter permease OppC 0.18 NOLOHH_11830 lysA diaminopimelate decarboxylase low > 76
Escherichia coli ECOR38 0.65 HEPCGN_25105 oppC oligopeptide ABC transporter permease OppC 0.18 HEPCGN_19565 lysA diaminopimelate decarboxylase low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_02438 Oligopeptide transport system permease protein OppC 0.18 OHPLBJKB_00891 Diaminopimelate decarboxylase low > 74
Escherichia fergusonii Becca 0.65 EFB2_02680 Oligopeptide transport system permease protein OppC 0.18 EFB2_01045 Diaminopimelate decarboxylase 0.47 11
Escherichia coli ECRC98 0.65 JDDGAC_05935 oppC oligopeptide ABC transporter permease OppC 0.18 JDDGAC_23610 lysA diaminopimelate decarboxylase low > 87
Escherichia coli ECRC62 0.65 BNILDI_18555 oppC oligopeptide ABC transporter permease OppC 0.18 BNILDI_10310 lysA diaminopimelate decarboxylase low > 75
Pectobacterium carotovorum WPP14 0.64 HER17_RS11010 oligopeptide ABC transporter permease OppC 0.16 HER17_RS03710 diaminopimelate decarboxylase low > 75
Erwinia amylovora T8 0.59 OLJFJH_13410 oligopeptide ABC transporter permease OppC 0.19 OLJFJH_08880 diaminopimelate decarboxylase low > 58
Rhodospirillum rubrum S1H 0.57 Rru_A0590 Binding-protein-dependent transport systems inner membrane component (NCBI) 0.43 Rru_A0396 Diaminopimelate decarboxylase (NCBI) — —
Burkholderia phytofirmans PsJN 0.52 BPHYT_RS22040 peptide ABC transporter permease 0.57 BPHYT_RS17930 diaminopimelate decarboxylase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.52 H281DRAFT_03127 oligopeptide transport system permease protein 0.56 H281DRAFT_05606 diaminopimelate decarboxylase — —
Paraburkholderia graminis OAS925 0.52 ABIE53_004171 oligopeptide transport system permease protein 0.57 ABIE53_003749 diaminopimelate decarboxylase low > 113
Rhizobium sp. OAE497 0.49 ABIE40_RS13575 ABC transporter permease subunit 0.47 ABIE40_RS17530 diaminopimelate decarboxylase low > 107
Paraburkholderia sabiae LMG 24235 0.48 QEN71_RS18350 ABC transporter permease subunit 0.59 QEN71_RS28080 diaminopimelate decarboxylase low > 153
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS11720 glutathione ABC transporter permease GsiD 0.57 ABZR87_RS02640 diaminopimelate decarboxylase low > 80
Ralstonia solanacearum PSI07 0.34 RPSI07_RS17225 glutathione ABC transporter permease GsiD 0.57 RPSI07_RS10250 diaminopimelate decarboxylase — —
Ralstonia solanacearum UW163 0.34 UW163_RS13585 glutathione ABC transporter permease GsiD 0.58 UW163_RS06625 diaminopimelate decarboxylase — —
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS00255 glutathione ABC transporter permease GsiD 0.58 RALBFv3_RS06990 diaminopimelate decarboxylase — —
Ralstonia solanacearum GMI1000 0.34 RS_RS06930 glutathione ABC transporter permease GsiD 0.57 RS_RS14930 diaminopimelate decarboxylase — —
Variovorax sp. SCN45 0.34 GFF1212 Oligopeptide transport permease protein OppC-like @ Glutathione ABC transporter, permease protein GsiD 0.52 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Mycobacterium tuberculosis H37Rv 0.33 Rv1282c Probable oligopeptide-transport integral membrane protein ABC transporter OppC 0.20 Rv1293 Diaminopimelate decarboxylase LysA (DAP decarboxylase) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.33 Psyr_2680 Binding-protein-dependent transport systems inner membrane component 0.66 Psyr_0182 diaminopimelate decarboxylase — —
Pseudomonas syringae pv. syringae B728a 0.33 Psyr_2680 Binding-protein-dependent transport systems inner membrane component 0.66 Psyr_0182 diaminopimelate decarboxylase — —
Variovorax sp. OAS795 0.33 ABID97_RS15395 glutathione ABC transporter permease GsiD 0.52 ABID97_RS23305 diaminopimelate decarboxylase — —
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS11980 glutathione ABC transporter permease 0.57 RR42_RS19050 diaminopimelate decarboxylase — —
Desulfovibrio vulgaris Miyazaki F 0.33 DvMF_0921 binding-protein-dependent transport systems inner membrane component (RefSeq) 0.54 DvMF_0353 diaminopimelate decarboxylase (RefSeq) low > 51
Castellaniella sp019104865 MT123 0.32 ABCV34_RS13525 glutathione ABC transporter permease GsiD 0.56 ABCV34_RS12685 diaminopimelate decarboxylase — —
Bosea sp. OAE506 0.32 ABIE41_RS02630 ABC transporter permease 0.38 ABIE41_RS08740 diaminopimelate decarboxylase — —
Azospirillum sp. SherDot2 0.32 MPMX19_04007 Glutathione transport system permease protein GsiD 0.46 MPMX19_05819 Diaminopimelate decarboxylase — —
Desulfovibrio vulgaris Hildenborough JW710 0.31 DVU2462 oligopeptide ABC transporter, permease protein (TIGR) 0.51 DVU1647 lysA-1 diaminopimelate decarboxylase (TIGR) low > 55
Herbaspirillum seropedicae SmR1 0.31 HSERO_RS09205 glutathione ABC transporter permease 0.56 HSERO_RS00950 diaminopimelate decarboxylase — —
Methylophilus sp. DMC18 0.31 GFF1313 putative D,D-dipeptide transport system permease protein DdpC 0.58 GFF2209 Diaminopimelate decarboxylase — —
Azospirillum brasilense Sp245 0.31 AZOBR_RS23025 ABC transporter permease 0.45 AZOBR_RS16945 diaminopimelate decarboxylase — —
Pseudomonas lactucae CFBP13502 0.30 GEMAOFIL_02397 putative D,D-dipeptide transport system permease protein DdpC 0.65 GEMAOFIL_05654 Diaminopimelate decarboxylase low > 96
Pseudomonas fluorescens FW300-N2C3 0.29 AO356_06860 D-ala-D-ala transporter subunit 0.66 AO356_12740 diaminopimelate decarboxylase — —
Phaeobacter inhibens DSM 17395 0.29 PGA1_c10100 putative glutathione transport system permease protein GsiD 0.48 PGA1_c03470 diaminopimelate decarboxylase LysA — —
Rhodopseudomonas palustris CGA009 0.29 TX73_007565 ABC transporter permease 0.47 TX73_024635 diaminopimelate decarboxylase — —
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_3231 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) 0.66 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Pseudomonas simiae WCS417 0.29 PS417_11140 peptide ABC transporter permease 0.64 PS417_27580 diaminopimelate decarboxylase — —
Pseudomonas sp. BP01 0.28 JOY50_RS03810 ABC transporter permease 0.62 JOY50_RS22595 lysA diaminopimelate decarboxylase low > 84
Xanthobacter sp. DMC5 0.28 GFF1278 putative D,D-dipeptide transport system permease protein DdpC 0.47 GFF3837 Diaminopimelate decarboxylase — —
Pseudomonas fluorescens SBW25-INTG 0.28 PFLU_RS11205 ABC transporter permease 0.64 PFLU_RS29265 diaminopimelate decarboxylase — —
Pseudomonas fluorescens SBW25 0.28 PFLU_RS11205 ABC transporter permease 0.64 PFLU_RS29265 diaminopimelate decarboxylase low > 109
Hydrogenophaga sp. GW460-11-11-14-LB1 0.27 GFF185 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) 0.51 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 90
Pseudomonas fluorescens FW300-N2E3 0.25 AO353_25865 peptide ABC transporter permease 0.65 AO353_09035 diaminopimelate decarboxylase — —
Pseudomonas orientalis W4I3 0.25 QF045_RS10790 ABC transporter permease 0.64 QF045_RS01945 diaminopimelate decarboxylase low > 93

Not shown: 2 genomes with orthologs for CSW01_05555 only; 53 genomes with orthologs for CSW01_00635 only