Conservation of cofitness between BPHYT_RS16975 and BPHYT_RS08950 in Burkholderia phytofirmans PsJN

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS16975 shikimate 5-dehydrogenase 1.0 BPHYT_RS08950 aminotransferase 0.74 11
Paraburkholderia graminis OAS925 0.93 ABIE53_003560 shikimate dehydrogenase 0.94 ABIE53_002025 alanine-synthesizing transaminase — —
Paraburkholderia bryophila 376MFSha3.1 0.90 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.94 H281DRAFT_00809 alanine-synthesizing transaminase — —
Paraburkholderia sabiae LMG 24235 0.81 QEN71_RS27130 shikimate dehydrogenase 0.91 QEN71_RS22410 pyridoxal phosphate-dependent aminotransferase 0.68 53
Ralstonia solanacearum PSI07 0.55 RPSI07_RS11300 shikimate dehydrogenase 0.77 RPSI07_RS17495 pyridoxal phosphate-dependent aminotransferase low > 81
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS05945 shikimate dehydrogenase 0.78 RALBFv3_RS15870 pyridoxal phosphate-dependent aminotransferase low > 76
Ralstonia solanacearum UW163 0.54 UW163_RS07680 shikimate dehydrogenase 0.78 UW163_RS13315 pyridoxal phosphate-dependent aminotransferase — —
Ralstonia solanacearum GMI1000 0.54 RS_RS13890 shikimate dehydrogenase 0.78 RS_RS06650 pyridoxal phosphate-dependent aminotransferase 0.51 23
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS01605 shikimate dehydrogenase 0.77 ABZR87_RS11440 pyridoxal phosphate-dependent aminotransferase 0.63 20
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS01990 shikimate 5-dehydrogenase 0.75 HSERO_RS10455 aminotransferase 0.69 29
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS17645 shikimate dehydrogenase 0.77 RR42_RS12545 aminotransferase 0.43 81
Pseudomonas sp. S08-1 0.47 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.66 OH686_22575 Alanine transaminase low > 80
Pseudomonas putida KT2440 0.47 PP_0074 shikimate 5-dehydrogenase 0.67 PP_1872 glutamate-pyruvate aminotransferase — —
Shewanella sp. ANA-3 0.47 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.64 Shewana3_2145 aminotransferase AlaT (RefSeq) low > 73
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_0025 shikimate dehydrogenase 0.67 Psyr_3615 Aminotransferase, class I and II 0.49 61
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_0025 shikimate dehydrogenase 0.67 Psyr_3615 Aminotransferase, class I and II low > 86
Pseudomonas sp. RS175 0.46 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.67 PFR28_00984 Glutamate-pyruvate aminotransferase AlaA — —
Pseudomonas simiae WCS417 0.45 PS417_00125 shikimate dehydrogenase 0.67 PS417_08560 aminotransferase — —
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_11315 shikimate dehydrogenase 0.67 AO356_03090 aminotransferase low > 104
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS00120 shikimate dehydrogenase 0.67 PFLU_RS08510 pyridoxal phosphate-dependent aminotransferase — —
Pseudomonas fluorescens SBW25 0.45 PFLU_RS00120 shikimate dehydrogenase 0.67 PFLU_RS08510 pyridoxal phosphate-dependent aminotransferase — —
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.67 Pf6N2E2_2446 Aspartate aminotransferase (EC 2.6.1.1) — —
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.67 Pf1N1B4_261 Aspartate aminotransferase (EC 2.6.1.1) low > 87
Marinobacter adhaerens HP15 0.45 HP15_3750 shikimate dehydrogenase 0.63 HP15_2095 aspartate aminotransferase — —
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_00280 shikimate dehydrogenase 0.68 CSW01_09870 pyridoxal phosphate-dependent aminotransferase low > 62
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.67 PfGW456L13_2252 Aspartate aminotransferase (EC 2.6.1.1) low > 87
Pseudomonas stutzeri RCH2 0.44 Psest_0029 shikimate 5-dehydrogenase 0.67 Psest_1772 Aspartate/tyrosine/aromatic aminotransferase — —
Shewanella oneidensis MR-1 0.44 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.64 SO2483 aspartate aminotransferase, putative (NCBI ptt file) low > 76
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_10670 shikimate dehydrogenase 0.67 AO353_19150 aminotransferase low > 101
Shewanella amazonensis SB2B 0.41 Sama_0052 shikimate dehydrogenase (RefSeq) 0.65 Sama_1697 aminotransferase AlaT (RefSeq) low > 62
Pantoea sp. MT58 0.40 IAI47_02315 shikimate dehydrogenase 0.66 IAI47_06350 pyridoxal phosphate-dependent aminotransferase — —
Shewanella loihica PV-4 0.40 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.65 Shew_1914 aminotransferase AlaT (RefSeq) low > 60
Escherichia coli BW25113 0.39 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.67 b2290 yfbQ aspartate aminotransferase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.67 OHPLBJKB_01415 Glutamate-pyruvate aminotransferase AlaA low > 73
Escherichia coli BL21 0.39 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.67 ECD_02215 glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase low > 61
Escherichia coli ECOR27 0.39 NOLOHH_09355 aroE shikimate dehydrogenase 0.67 NOLOHH_14445 alaA alanine transaminase AlaA low > 75
Escherichia coli ECRC62 0.39 BNILDI_02165 aroE shikimate dehydrogenase 0.67 BNILDI_13365 alaA alanine transaminase AlaA low > 75
Escherichia coli ECOR38 0.39 HEPCGN_16385 aroE shikimate dehydrogenase 0.67 HEPCGN_22030 alaA alanine transaminase AlaA low > 87
Escherichia coli ECRC98 0.38 JDDGAC_21185 aroE shikimate dehydrogenase 0.67 JDDGAC_26790 alaA alanine transaminase AlaA low > 86
Escherichia coli ECRC100 0.38 OKFHMN_17565 aroE shikimate dehydrogenase 0.67 OKFHMN_22825 alaA alanine transaminase AlaA low > 80
Escherichia coli ECRC101 0.38 MCAODC_08085 aroE shikimate dehydrogenase 0.67 MCAODC_13865 alaA alanine transaminase AlaA low > 87
Escherichia coli ECRC102 0.38 NIAGMN_15325 aroE shikimate dehydrogenase 0.67 NIAGMN_20595 alaA alanine transaminase AlaA — —
Escherichia coli ECRC99 0.38 KEDOAH_10585 aroE shikimate dehydrogenase 0.67 KEDOAH_05370 alaA alanine transaminase AlaA — —
Acidovorax sp. GW101-3H11 0.38 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.76 Ac3H11_1508 Aspartate aminotransferase (EC 2.6.1.1) low > 79
Escherichia coli Nissle 1917 0.38 ECOLIN_RS18840 shikimate dehydrogenase 0.67 ECOLIN_RS13295 alanine transaminase AlaA low > 55
Escherichia fergusonii Becca 0.38 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.67 EFB2_01568 Glutamate-pyruvate aminotransferase AlaA low > 86
Enterobacter asburiae PDN3 0.37 EX28DRAFT_0046 shikimate dehydrogenase 0.67 EX28DRAFT_0319 Aspartate/tyrosine/aromatic aminotransferase low > 76
Serratia liquefaciens MT49 0.37 IAI46_23240 shikimate dehydrogenase 0.66 IAI46_17720 pyridoxal phosphate-dependent aminotransferase low > 86
Erwinia tracheiphila SCR3 0.37 LU632_RS22445 aroE shikimate dehydrogenase 0.65 LU632_RS07955 pyridoxal phosphate-dependent aminotransferase 0.58 23
Klebsiella michiganensis M5al 0.36 BWI76_RS25645 shikimate dehydrogenase 0.67 BWI76_RS20205 aminotransferase AlaT low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.67 GFF1894 Aspartate aminotransferase (EC 2.6.1.1) low > 78
Enterobacter sp. TBS_079 0.36 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.67 MPMX20_03220 Glutamate-pyruvate aminotransferase AlaA low > 85
Variovorax sp. SCN45 0.35 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.75 GFF2803 Alanine transaminase (EC 2.6.1.2) low > 127
Acinetobacter radioresistens SK82 0.35 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.66 MPMX26_01871 Glutamate-pyruvate aminotransferase AlaA low > 36
Dickeya dadantii 3937 0.35 DDA3937_RS19100 shikimate dehydrogenase 0.66 DDA3937_RS14345 pyridoxal phosphate-dependent aminotransferase — —
Alteromonas macleodii MIT1002 0.35 MIT1002_00029 Shikimate dehydrogenase 0.61 MIT1002_02306 Glutamate-pyruvate aminotransferase AlaA — —
Dickeya dianthicola ME23 0.35 DZA65_RS20315 shikimate dehydrogenase 0.66 DZA65_RS14995 pyridoxal phosphate-dependent aminotransferase — —
Dickeya dianthicola 67-19 0.35 HGI48_RS19190 shikimate dehydrogenase 0.66 HGI48_RS14320 pyridoxal phosphate-dependent aminotransferase — —
Variovorax sp. OAS795 0.34 ABID97_RS06300 shikimate dehydrogenase 0.75 ABID97_RS10885 pyridoxal phosphate-dependent aminotransferase — —
Pectobacterium carotovorum WPP14 0.33 HER17_RS02250 shikimate dehydrogenase 0.65 HER17_RS07115 pyridoxal phosphate-dependent aminotransferase low > 75
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.36 Xcc-8004.1010.1 Aspartate aminotransferase (EC 2.6.1.1) 0.90 7
Lysobacter sp. OAE881 0.29 ABIE51_RS01815 shikimate dehydrogenase 0.39 ABIE51_RS18840 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 62
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS20055 shikimate dehydrogenase 0.16 ABZR88_RS12100 pyridoxal phosphate-dependent aminotransferase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.14 Echvi_1145 Shikimate 5-dehydrogenase 0.17 Echvi_0032 Aspartate/tyrosine/aromatic aminotransferase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.14 CA264_19075 shikimate dehydrogenase 0.58 CA264_06065 aminotransferase — —
Mycobacterium tuberculosis H37Rv 0.11 Rv2552c Probable shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase) 0.60 Rv0337c Probable aspartate aminotransferase AspC (transaminase A) (ASPAT) — —

Not shown: 25 genomes with orthologs for BPHYT_RS16975 only; 7 genomes with orthologs for BPHYT_RS08950 only