Conservation of cofitness between BNILDI_05025 and BNILDI_20670 in Escherichia coli ECRC62

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECRC62 1.0 BNILDI_05025 rarD EamA family transporter RarD 1.0 BNILDI_20670 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.61 8
Escherichia coli ECOR27 1.00 NOLOHH_06505 rarD EamA family transporter RarD 1.00 NOLOHH_22410 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 75
Escherichia coli ECRC100 1.00 OKFHMN_14375 rarD EamA family transporter RarD 1.00 OKFHMN_06040 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.54 76
Escherichia coli ECRC98 1.00 JDDGAC_18000 rarD EamA family transporter RarD 1.00 JDDGAC_09675 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 86
Escherichia coli ECRC99 1.00 KEDOAH_13775 rarD EamA family transporter RarD 1.00 KEDOAH_21870 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC102 1.00 NIAGMN_12130 rarD EamA family transporter RarD 1.00 NIAGMN_04085 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli BW25113 0.99 b3819 rarD predicted chloramphenical resistance permease (NCBI) 1.00 b0839 dacC D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) low > 76
Escherichia coli ECRC101 0.99 MCAODC_04880 rarD EamA family transporter RarD 1.00 MCAODC_25255 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 87
Escherichia coli BL21 0.99 ECD_03698 putative chloramphenical resistance permease 1.00 ECD_00806 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a low > 61
Escherichia fergusonii Becca 0.99 EFB2_04818 Protein RarD 1.00 EFB2_03267 D-alanyl-D-alanine carboxypeptidase DacC low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_04232 Protein RarD 1.00 OHPLBJKB_02871 D-alanyl-D-alanine carboxypeptidase DacC low > 73
Escherichia coli ECOR38 0.99 HEPCGN_13075 rarD EamA family transporter RarD 1.00 HEPCGN_01990 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 87
Escherichia coli Nissle 1917 0.99 ECOLIN_RS21920 EamA family transporter RarD 1.00 ECOLIN_RS04460 serine-type D-Ala-D-Ala carboxypeptidase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF245 Protein rarD 0.86 GFF744 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 78
Enterobacter asburiae PDN3 0.91 EX28DRAFT_4484 rarD protein 0.90 EX28DRAFT_2127 D-alanyl-D-alanine carboxypeptidase low > 76
Enterobacter sp. TBS_079 0.91 MPMX20_04461 Protein RarD 0.90 MPMX20_01477 D-alanyl-D-alanine carboxypeptidase DacC low > 85
Klebsiella michiganensis M5al 0.87 BWI76_RS01230 chloramphenicol resistance permease RarD 0.85 BWI76_RS09145 serine-type D-Ala-D-Ala carboxypeptidase low > 92
Serratia liquefaciens MT49 0.80 IAI46_00755 EamA family transporter RarD 0.71 IAI46_08285 serine hydrolase low > 86
Pectobacterium carotovorum WPP14 0.76 HER17_RS01380 EamA family transporter RarD 0.72 HER17_RS12545 serine hydrolase low > 75
Pantoea sp. MT58 0.73 IAI47_18375 EamA family transporter RarD 0.75 IAI47_13090 serine hydrolase low > 76
Rahnella sp. WP5 0.71 EX31_RS15195 EamA family transporter RarD 0.65 EX31_RS09695 D-alanyl-D-alanine carboxypeptidase low > 89
Dickeya dadantii 3937 0.67 DDA3937_RS19865 EamA family transporter RarD 0.68 DDA3937_RS09420 serine hydrolase low > 74
Dickeya dianthicola ME23 0.65 DZA65_RS21060 EamA family transporter RarD 0.67 DZA65_RS09745 D-alanyl-D-alanine carboxypeptidase low > 75
Dickeya dianthicola 67-19 0.65 HGI48_RS20020 EamA family transporter RarD 0.68 HGI48_RS09435 serine hydrolase low > 71
Shewanella amazonensis SB2B 0.55 Sama_0332 rarD protein (RefSeq) 0.51 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Alteromonas macleodii MIT1002 0.49 MIT1002_00151 putative chloramphenical resistance permease RarD 0.47 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor — —
Pseudomonas fluorescens FW300-N2E2 0.48 Pf6N2E2_4754 Protein rarD 0.42 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 103
Pseudomonas sp. RS175 0.48 PFR28_04108 Protein RarD 0.42 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC low > 88
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_2480 Protein rarD 0.42 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas fluorescens GW456-L13 0.47 PfGW456L13_1142 Protein rarD 0.41 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_14110 Putative D-serine transporter (from data) 0.42 AO356_15330 D-alanyl-D-alanine carboxypeptidase 0.27 53
Pseudomonas fluorescens FW300-N2E3 0.46 AO353_07550 chloramphenical resistance permease RarD 0.41 AO353_06455 D-alanyl-D-alanine carboxypeptidase low > 101
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS27675 EamA family transporter RarD 0.41 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase low > 109
Pseudomonas simiae WCS417 0.46 PS417_26030 chloramphenical resistance permease RarD 0.41 PS417_24705 D-alanyl-D-alanine carboxypeptidase low > 88
Pseudomonas putida KT2440 0.46 PP_0358 conserved membrane protein of unknown function 0.42 PP_4803 D-alanyl-D-alanine carboxypeptidase low > 96
Pseudomonas fluorescens SBW25 0.46 PFLU_RS27675 EamA family transporter RarD 0.41 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase low > 109
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS26035 EamA family transporter RarD 0.36 QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein low > 153
Pseudomonas stutzeri RCH2 0.41 Psest_0356 rarD protein 0.41 Psest_0516 D-alanyl-D-alanine carboxypeptidase low > 67
Magnetospirillum magneticum AMB-1 0.41 AMB_RS06360 EamA family transporter RarD 0.28 AMB_RS12315 D-alanyl-D-alanine carboxypeptidase low > 64
Pseudomonas syringae pv. syringae B728a ΔmexB 0.40 Psyr_4698 RarD protein 0.40 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 low > 86
Pseudomonas syringae pv. syringae B728a 0.40 Psyr_4698 RarD protein 0.40 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 low > 86
Pseudomonas sp. S08-1 0.38 OH686_10385 Uncharacterized inner membrane protein RarD 0.41 OH686_09300 D-alanyl-D-alanine carboxypeptidase low > 80
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS20410 transporter 0.34 RR42_RS01680 cytochrome C550 low > 128
Lysobacter sp. OAE881 0.38 ABIE51_RS03205 EamA family transporter RarD 0.40 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein low > 62
Kangiella aquimarina DSM 16071 0.38 B158DRAFT_0490 rarD protein 0.45 B158DRAFT_0079 D-alanyl-D-alanine carboxypeptidase — —
Ralstonia sp. UNC404CL21Col 0.37 ABZR87_RS08060 EamA family transporter RarD 0.34 ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein low > 80
Azospirillum brasilense Sp245 0.36 AZOBR_RS04315 transporter 0.26 AZOBR_RS08775 D-alanyl-D-alanine carboxypeptidase — —
Sphingomonas koreensis DSMZ 15582 0.36 Ga0059261_3478 rarD protein 0.27 Ga0059261_0122 D-alanyl-D-alanine carboxypeptidase — —
Ralstonia solanacearum GMI1000 0.36 RS_RS02855 EamA family transporter RarD 0.35 RS_RS01610 D-alanyl-D-alanine carboxypeptidase low > 80
Ralstonia solanacearum UW163 0.35 UW163_RS01440 EamA family transporter RarD 0.34 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase — —
Phaeobacter inhibens DSM 17395 0.35 PGA1_c33100 protein RarD 0.24 PGA1_c08020 D-alanyl-D-alanine carboxypeptidase DacC — —
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS12170 EamA family transporter RarD 0.34 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase low > 76
Acidovorax sp. GW101-3H11 0.35 Ac3H11_4000 RarD protein, DMT superfamily transporter 0.31 Ac3H11_2142 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Ralstonia solanacearum PSI07 0.33 RPSI07_RS21160 EamA family transporter RarD 0.35 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase low > 81
Herbaspirillum seropedicae SmR1 0.33 HSERO_RS23555 membrane protein 0.34 HSERO_RS21530 cytochrome C550 low > 78
Xanthomonas campestris pv. campestris strain 8004 0.33 Xcc-8004.4969.1 RarD protein, chloamphenicol sensitive 0.40 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 74
Azospirillum sp. SherDot2 0.31 MPMX19_00476 Protein RarD 0.29 MPMX19_01465 D-alanyl-D-alanine carboxypeptidase DacC — —
Rhizobium sp. OAE497 0.31 ABIE40_RS06215 EamA family transporter RarD 0.21 ABIE40_RS09505 D-alanyl-D-alanine carboxypeptidase family protein low > 107
Rhodospirillum rubrum S1H 0.31 Rru_A0706 RarD protein (NCBI) 0.31 Rru_A1704 Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) — —
Burkholderia phytofirmans PsJN 0.20 BPHYT_RS34860 chemotaxis protein 0.36 BPHYT_RS02415 cytochrome C550 0.23 90
Hydrogenophaga sp. GW460-11-11-14-LB1 0.19 GFF1172 Chloramphenicol-sensitive protein rarD 0.33 GFF1806 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 90
Castellaniella sp019104865 MT123 0.17 ABCV34_RS08310 EamA family transporter RarD 0.36 ABCV34_RS13340 D-alanyl-D-alanine carboxypeptidase family protein low > 48
Paraburkholderia bryophila 376MFSha3.1 0.16 H281DRAFT_03622 chloramphenicol-sensitive protein RarD 0.35 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 low > 103
Paraburkholderia graminis OAS925 0.16 ABIE53_004634 chloramphenicol-sensitive protein RarD 0.35 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) low > 113

Not shown: 16 genomes with orthologs for BNILDI_05025 only; 10 genomes with orthologs for BNILDI_20670 only