Conservation of cofitness between Atu0690 and Atu2685 in Agrobacterium fabrum C58

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu0690 hypothetical protein 1.0 Atu2685 aconitate hydratase 0.26 13
Rhizobium sp. OAE497 0.81 ABIE40_RS03765 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.90 ABIE40_RS18275 aconitate hydratase AcnA — —
Sinorhizobium meliloti 1021 0.72 SMc00902 hypothetical protein 0.88 SMc03846 aconitate hydratase — —
Bosea sp. OAE506 0.56 ABIE41_RS23215 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.79 ABIE41_RS04965 aconitate hydratase AcnA — —
Rhodopseudomonas palustris CGA009 0.48 TX73_005985 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.73 TX73_001045 aconitate hydratase AcnA — —
Phaeobacter inhibens DSM 17395 0.44 PGA1_c29260 ribosomal RNA small subunit methyltransferase D 0.62 PGA1_c18830 aconitate hydratase AcnA — —
Caulobacter crescentus NA1000 Δfur 0.44 CCNA_00227 methyltransferase 0.65 CCNA_03781 aconitate hydratase — —
Caulobacter crescentus NA1000 0.44 CCNA_00227 methyltransferase 0.65 CCNA_03781 aconitate hydratase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.42 A4249_RS04215 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.67 A4249_RS12770 aconitate hydratase AcnA — —
Azospirillum brasilense Sp245 0.37 AZOBR_RS04500 methyltransferase 0.64 AZOBR_RS02985 aconitate hydratase — —
Dinoroseobacter shibae DFL-12 0.34 Dshi_0115 putative methyltransferase (RefSeq) 0.63 Dshi_1851 aconitate hydratase 1 (RefSeq) low > 64
Azospirillum sp. SherDot2 0.33 MPMX19_01626 Ribosomal RNA small subunit methyltransferase D 0.65 MPMX19_02045 Aconitate hydratase A — —
Rhodospirillum rubrum S1H 0.33 Rru_A0653 hypothetical protein (NCBI) 0.63 Rru_A3511 Aconitate hydratase 1 (NCBI) — —
Magnetospirillum magneticum AMB-1 0.33 AMB_RS20860 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.52 AMB_RS18485 aconitate hydratase AcnA low > 64
Mycobacterium tuberculosis H37Rv 0.29 Rv2966c Possible methyltransferase (methylase) 0.54 Rv1475c Probable iron-regulated aconitate hydratase Acn (citrate hydro-lyase) (aconitase) — —
Sphingomonas koreensis DSMZ 15582 0.28 Ga0059261_0246 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.61 Ga0059261_3296 aconitate hydratase 1 — —
Dickeya dianthicola 67-19 0.28 HGI48_RS20760 16S rRNA (guanine(966)-N(2))-methyltransferase 0.55 HGI48_RS12610 aconitate hydratase AcnA low > 71
Bifidobacterium breve UCC2003 0.28 BBR_RS19290 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.55 BBR_RS16600 aconitate hydratase AcnA low > 34
Dickeya dianthicola ME23 0.28 DZA65_RS21770 16S rRNA (guanine(966)-N(2))-methyltransferase 0.55 DZA65_RS13065 aconitate hydratase AcnA low > 75
Desulfovibrio vulgaris Miyazaki F 0.28 DvMF_0172 methyltransferase (RefSeq) 0.10 DvMF_3021 aconitate hydratase (RefSeq) — —
Dickeya dadantii 3937 0.27 DDA3937_RS00630 16S rRNA (guanine(966)-N(2))-methyltransferase 0.55 DDA3937_RS12555 aconitate hydratase AcnA low > 74
Shewanella oneidensis MR-1 0.27 SO4587 conserved hypothetical protein TIGR00095 (NCBI ptt file) 0.39 SO0343 acnA aconitate hydratase 1 (NCBI ptt file) low > 76
Marinobacter adhaerens HP15 0.27 HP15_3491 conserved hypothetical protein 0.62 HP15_3433 Aconitate hydratase (EC 4.2.1.3) (from data) low > 73
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_00238 Ribosomal RNA small subunit methyltransferase D 0.57 OHPLBJKB_02406 Aconitate hydratase A low > 73
Shewanella sp. ANA-3 0.26 Shewana3_3973 putative methyltransferase (RefSeq) 0.40 Shewana3_3827 aconitate hydratase (RefSeq) low > 73
Escherichia fergusonii Becca 0.26 EFB2_00351 Ribosomal RNA small subunit methyltransferase D 0.57 EFB2_02649 Aconitate hydratase A low > 86
Escherichia coli ECOR27 0.26 NOLOHH_08500 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.57 NOLOHH_20240 acnA aconitate hydratase AcnA low > 57
Escherichia coli ECRC62 0.26 BNILDI_03015 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.57 BNILDI_18390 acnA aconitate hydratase AcnA — —
Escherichia coli Nissle 1917 0.26 ECOLIN_RS19815 16S rRNA (guanine(966)-N(2))-methyltransferase 0.57 ECOLIN_RS07705 aconitate hydratase AcnA — —
Escherichia coli BW25113 0.26 b3465 yhhF predicted methyltransferase (NCBI) 0.58 b1276 acnA aconitate hydratase (NCBI) low > 76
Escherichia coli ECOR38 0.26 HEPCGN_15525 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.58 HEPCGN_25625 acnA aconitate hydratase AcnA low > 85
Pectobacterium carotovorum WPP14 0.26 HER17_RS00465 16S rRNA (guanine(966)-N(2))-methyltransferase 0.58 HER17_RS09315 aconitate hydratase AcnA low > 75
Pantoea sp. MT58 0.26 IAI47_01535 16S rRNA (guanine(966)-N(2))-methyltransferase 0.57 IAI47_09250 aconitate hydratase AcnA low > 76
Escherichia coli ECRC101 0.25 OKFHMN_16695 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.57 OKFHMN_02575 acnA aconitate hydratase AcnA — —
Escherichia coli ECRC102 0.25 NIAGMN_14465 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.57 NIAGMN_26745 acnA aconitate hydratase AcnA — —
Escherichia coli ECRC98 0.25 JDDGAC_20325 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.57 JDDGAC_05120 acnA aconitate hydratase AcnA — —
Escherichia coli ECRC99 0.25 KEDOAH_11445 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.57 KEDOAH_26190 acnA aconitate hydratase AcnA — —
Escherichia coli ECRC101 0.25 MCAODC_07225 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.57 MCAODC_15690 acnA aconitate hydratase AcnA — —
Shewanella amazonensis SB2B 0.25 Sama_3469 hypothetical protein (RefSeq) 0.38 Sama_3296 aconitate hydratase (RefSeq) low > 62
Escherichia coli BL21 0.25 ECD_03314 16S rRNA m(2)G966 methyltransferase, SAM-dependent 0.57 ECD_01253 aconitate hydratase 1; aconitase A low > 60
Pseudomonas syringae pv. syringae B728a ΔmexB 0.25 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 0.60 Psyr_3404 aconitase low > 86
Pseudomonas syringae pv. syringae B728a 0.25 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 0.60 Psyr_3404 aconitase low > 86
Rhodanobacter sp. FW510-T8 0.25 OKGIIK_02580 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.55 OKGIIK_06455 acnA aconitate hydratase AcnA — —
Pseudomonas sp. S08-1 0.25 OH686_14220 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.60 OH686_02100 aconitate hydratase 1 low > 80
Klebsiella michiganensis M5al 0.25 BWI76_RS26405 16S rRNA (guanine(966)-N(2))-methyltransferase 0.58 BWI76_RS11940 aconitate hydratase 1 low > 92
Phocaeicola dorei CL03T12C01 0.25 ABI39_RS09675 RsmD family RNA methyltransferase 0.10 ABI39_RS09955 aconitate hydratase low > 72
Phocaeicola vulgatus CL09T03C04 0.25 HMPREF1058_RS14025 RsmD family RNA methyltransferase 0.10 HMPREF1058_RS14325 aconitate hydratase low > 67
Serratia liquefaciens MT49 0.25 IAI46_00920 16S rRNA (guanine(966)-N(2))-methyltransferase 0.60 IAI46_13950 aconitate hydratase AcnA low > 86
Mucilaginibacter yixingensis YX-36 DSM 26809 0.24 ABZR88_RS07045 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.12 ABZR88_RS16750 aconitate hydratase — —
Rhodanobacter denitrificans FW104-10B01 0.24 LRK54_RS13340 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.55 LRK54_RS00785 aconitate hydratase AcnA — —
Bacteroides stercoris CC31F 0.24 HMPREF1181_RS09245 RsmD family RNA methyltransferase 0.10 HMPREF1181_RS08305 aconitate hydratase low > 56
Rahnella sp. WP5 0.24 EX31_RS14835 16S rRNA (guanine(966)-N(2))-methyltransferase 0.61 EX31_RS09885 aconitate hydratase AcnA low > 89
Enterobacter sp. TBS_079 0.24 MPMX20_04342 Ribosomal RNA small subunit methyltransferase D 0.57 MPMX20_02499 Aconitate hydratase A low > 85
Rhodanobacter denitrificans MT42 0.24 LRK55_RS13080 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.55 LRK55_RS00560 aconitate hydratase AcnA — —
Enterobacter asburiae PDN3 0.24 EX28DRAFT_4299 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.58 EX28DRAFT_0949 aconitate hydratase 1 low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.24 GFF540 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) 0.58 GFF2709 Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) low > 78
Bacteroides ovatus ATCC 8483 0.24 BACOVA_04638 putative RNA methyltransferase, RsmD family 0.11 BACOVA_03310 aconitate hydratase low > 94
Pseudomonas putida KT2440 0.24 PP_5114 putative adenine methyltransferase 0.59 PP_2112 aconitate hydratase 1 low > 96
Bacteroides thetaiotaomicron VPI-5482 0.23 BT3979 putative methyltransferase (NCBI ptt file) 0.11 BT2072 aconitate hydratase (NCBI ptt file) low > 81
Shewanella loihica PV-4 0.23 Shew_3607 putative methyltransferase (RefSeq) 0.39 Shew_1822 aconitate hydratase (RefSeq) low > 60
Dyella japonica UNC79MFTsu3.2 0.22 ABZR86_RS19990 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.56 ABZR86_RS02165 aconitate hydratase AcnA low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.21 CA265_RS12725 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.10 CA265_RS16405 aconitate hydratase low > 88
Parabacteroides merdae CL09T00C40 0.20 HMPREF1078_RS04100 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.11 HMPREF1078_RS07515 aconitate hydratase low > 61

Not shown: 4 genomes with orthologs for Atu0690 only; 35 genomes with orthologs for Atu2685 only