Conservation of cofitness between Atu0346 and Atu0298 in Agrobacterium fabrum C58

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu0346 uridylyltransferase/uridylyl-removing enzyme UTase 1.0 Atu0298 orotidine 5 0.48 18
Rhizobium sp. OAE497 0.75 ABIE40_RS01765 [protein-PII] uridylyltransferase 0.79 ABIE40_RS01345 orotidine-5'-phosphate decarboxylase — —
Sinorhizobium meliloti 1021 0.72 SMc01124 PII uridylyl-transferase 0.75 SMc00412 orotidine 5'-phosphate decarboxylase 0.68 41
Rhodopseudomonas palustris CGA009 0.51 TX73_003060 [protein-PII] uridylyltransferase 0.51 TX73_001750 orotidine-5'-phosphate decarboxylase — —
Bosea sp. OAE506 0.50 ABIE41_RS00205 [protein-PII] uridylyltransferase 0.53 ABIE41_RS00050 orotidine-5'-phosphate decarboxylase low > 77
Azospirillum brasilense Sp245 0.42 AZOBR_RS02110 protein-PII uridylyltransferase 0.29 AZOBR_RS03135 orotidine 5'-phosphate decarboxylase low > 97
Azospirillum sp. SherDot2 0.42 MPMX19_00912 Bifunctional uridylyltransferase/uridylyl-removing enzyme 0.26 MPMX19_02208 Orotidine 5'-phosphate decarboxylase — —
Rhodospirillum rubrum S1H 0.41 Rru_A3539 GlnB (protein PII) uridylyltransferase, GlnD (NCBI) 0.29 Rru_A3424 Orotidine-5'-phosphate decarboxylase (NCBI) low > 58
Magnetospirillum magneticum AMB-1 0.40 AMB_RS22650 [protein-PII] uridylyltransferase 0.26 AMB_RS20255 orotidine-5'-phosphate decarboxylase — —
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_2737 UTP--GlnB (protein PII) uridylyltransferase, GlnD 0.32 Ga0059261_0234 orotidine-5'-phosphate decarboxylase (EC 4.1.1.23) — —
Caulobacter crescentus NA1000 Δfur 0.37 CCNA_00013 protein-PII uridylyltransferase 0.44 CCNA_00104 orotidine 5'-phosphate decarboxylase — —
Caulobacter crescentus NA1000 0.37 CCNA_00013 protein-PII uridylyltransferase 0.44 CCNA_00104 orotidine 5'-phosphate decarboxylase 0.67 31
Dinoroseobacter shibae DFL-12 0.37 Dshi_2833 UTP-GlnB uridylyltransferase, GlnD (RefSeq) 0.31 Dshi_0615 orotidine 5'-phosphate decarboxylase (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.36 PGA1_c26750 uridylyltransferase GlnD 0.36 PGA1_c32450 orotidine 5'-phosphate decarboxylase PyrF — —
Brevundimonas sp. GW460-12-10-14-LB2 0.33 A4249_RS13590 [protein-PII] uridylyltransferase 0.37 A4249_RS14665 orotidine-5'-phosphate decarboxylase — —
Pseudomonas sp. S08-1 0.25 OH686_06495 protein-P-II uridylyltransferase 0.28 OH686_00580 Orotidine 5'-phosphate decarboxylase low > 80
Pseudomonas putida KT2440 0.24 PP_1589 uridylyltransferase 0.30 PP_1815 Orotidine 5'-phosphate decarboxylase — —
Pseudomonas stutzeri RCH2 0.24 Psest_2845 [Protein-PII] uridylyltransferase 0.28 Psest_1714 orotidine 5'-phosphate decarboxylase, subfamily 1 — —
Pseudomonas fluorescens FW300-N1B4 0.24 Pf1N1B4_3081 [Protein-PII] uridylyltransferase (EC 2.7.7.59) 0.29 Pf1N1B4_514 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) — —
Pseudomonas simiae WCS417 0.24 PS417_06200 protein-PII uridylyltransferase 0.29 PS417_09055 orotidine 5'-phosphate decarboxylase — —
Pseudomonas fluorescens SBW25 0.23 PFLU_RS06265 [protein-PII] uridylyltransferase 0.30 PFLU_RS09110 orotidine-5'-phosphate decarboxylase — —
Pseudomonas fluorescens SBW25-INTG 0.23 PFLU_RS06265 [protein-PII] uridylyltransferase 0.30 PFLU_RS09110 orotidine-5'-phosphate decarboxylase — —
Pseudomonas fluorescens FW300-N2E3 0.23 AO353_16450 protein-PII uridylyltransferase 0.31 AO353_01670 orotidine 5'-phosphate decarboxylase — —
Pseudomonas fluorescens GW456-L13 0.23 PfGW456L13_4711 [Protein-PII] uridylyltransferase (EC 2.7.7.59) 0.31 PfGW456L13_2056 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) — —
Pseudomonas fluorescens FW300-N2E2 0.23 Pf6N2E2_3072 [Protein-PII] uridylyltransferase (EC 2.7.7.59) 0.29 Pf6N2E2_5887 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) — —
Pseudomonas fluorescens FW300-N2C3 0.23 AO356_06050 protein-PII uridylyltransferase 0.29 AO356_19850 orotidine 5'-phosphate decarboxylase — —
Pseudomonas sp. RS175 0.22 PFR28_00394 Bifunctional uridylyltransferase/uridylyl-removing enzyme 0.29 PFR28_03064 'Orotidine 5'-phosphate decarboxylase' transl_table=11 — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.22 Psyr_1341 Protein-P-II uridylyltransferase 0.29 Psyr_1836 orotidine-5'-phosphate decarboxylase — —
Pseudomonas syringae pv. syringae B728a 0.22 Psyr_1341 Protein-P-II uridylyltransferase 0.29 Psyr_1836 orotidine-5'-phosphate decarboxylase — —
Dickeya dadantii 3937 0.22 DDA3937_RS05105 bifunctional uridylyltransferase/uridylyl-removing protein GlnD 0.31 DDA3937_RS12525 orotidine-5'-phosphate decarboxylase 0.58 62
Dickeya dianthicola ME23 0.22 DZA65_RS05445 bifunctional uridylyltransferase/uridylyl-removing protein GlnD 0.30 DZA65_RS13030 orotidine-5'-phosphate decarboxylase low > 75
Dickeya dianthicola 67-19 0.22 HGI48_RS05105 bifunctional uridylyltransferase/uridylyl-removing protein GlnD 0.30 HGI48_RS12580 orotidine-5'-phosphate decarboxylase low > 71
Serratia liquefaciens MT49 0.21 IAI46_20270 bifunctional uridylyltransferase/uridylyl-removing protein GlnD 0.28 IAI46_13915 orotidine-5'-phosphate decarboxylase low > 86
Escherichia coli ECOR27 0.21 NOLOHH_02580 glnD bifunctional uridylyltransferase/uridylyl-removing protein GlnD 0.30 NOLOHH_20215 pyrF orotidine-5'-phosphate decarboxylase — —
Escherichia coli BL21 0.21 ECD_00165 uridylyltransferase 0.30 ECD_01258 orotidine-5'-phosphate decarboxylase low > 60
Escherichia coli ECRC62 0.21 BNILDI_09090 glnD bifunctional uridylyltransferase/uridylyl-removing protein GlnD 0.30 BNILDI_18365 pyrF orotidine-5'-phosphate decarboxylase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.21 OHPLBJKB_03497 Bifunctional uridylyltransferase/uridylyl-removing enzyme 0.30 OHPLBJKB_02401 'Orotidine 5'-phosphate decarboxylase' transl_table=11 low > 73
Escherichia coli ECOR38 0.21 HEPCGN_08185 glnD bifunctional uridylyltransferase/uridylyl-removing protein GlnD 0.29 HEPCGN_25650 pyrF orotidine-5'-phosphate decarboxylase — —
Escherichia coli Nissle 1917 0.21 ECOLIN_RS00915 bifunctional uridylyltransferase/uridylyl-removing protein GlnD 0.28 ECOLIN_RS07730 orotidine-5'-phosphate decarboxylase — —
Escherichia fergusonii Becca 0.21 EFB2_03878 Bifunctional uridylyltransferase/uridylyl-removing enzyme 0.29 EFB2_02644 Orotidine 5'-phosphate decarboxylase — —
Escherichia coli ECRC98 0.21 JDDGAC_13830 glnD bifunctional uridylyltransferase/uridylyl-removing protein GlnD 0.29 JDDGAC_05095 pyrF orotidine-5'-phosphate decarboxylase — —
Escherichia coli BW25113 0.21 b0167 glnD PII uridylyl-transferase (NCBI) 0.30 b1281 pyrF orotidine 5'-phosphate decarboxylase (NCBI) low > 76
Escherichia coli ECRC99 0.21 KEDOAH_17920 glnD bifunctional uridylyltransferase/uridylyl-removing protein GlnD 0.29 KEDOAH_26215 pyrF orotidine-5'-phosphate decarboxylase — —
Escherichia coli ECRC102 0.21 NIAGMN_08085 glnD bifunctional uridylyltransferase/uridylyl-removing protein GlnD 0.29 NIAGMN_26720 pyrF orotidine-5'-phosphate decarboxylase — —
Escherichia coli ECRC101 0.21 MCAODC_00750 glnD bifunctional uridylyltransferase/uridylyl-removing protein GlnD 0.29 MCAODC_15715 pyrF orotidine-5'-phosphate decarboxylase — —
Escherichia coli ECRC101 0.21 OKFHMN_10235 glnD bifunctional uridylyltransferase/uridylyl-removing protein GlnD 0.29 OKFHMN_02550 pyrF orotidine-5'-phosphate decarboxylase — —
Marinobacter adhaerens HP15 0.21 HP15_1163 [protein-PII] uridylyltransferase 0.32 HP15_1370 orotidine 5'-phosphate decarboxylase — —
Pectobacterium carotovorum WPP14 0.21 HER17_RS16345 bifunctional uridylyltransferase/uridylyl-removing protein GlnD 0.30 HER17_RS09390 orotidine-5'-phosphate decarboxylase low > 75
Klebsiella michiganensis M5al 0.21 BWI76_RS05200 bifunctional uridylyltransferase/uridylyl-removing protein 0.29 BWI76_RS11965 orotidine-5'-phosphate decarboxylase 0.39 76
Enterobacter asburiae PDN3 0.21 EX28DRAFT_3754 UTP--GlnB (protein PII) uridylyltransferase, GlnD 0.29 EX28DRAFT_0954 orotidine-5'-phosphate decarboxylase (EC 4.1.1.23) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.21 GFF55 [Protein-PII] uridylyltransferase (EC 2.7.7.59) 0.27 GFF2704 'Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)' transl_table=11 low > 78
Pantoea sp. MT58 0.21 IAI47_15540 bifunctional uridylyltransferase/uridylyl-removing protein GlnD 0.30 IAI47_09275 orotidine-5'-phosphate decarboxylase low > 76
Enterobacter sp. TBS_079 0.21 MPMX20_00851 Bifunctional uridylyltransferase/uridylyl-removing enzyme 0.28 MPMX20_02494 Orotidine 5'-phosphate decarboxylase — —
Rahnella sp. WP5 0.21 EX31_RS13045 bifunctional uridylyltransferase/uridylyl-removing protein GlnD 0.29 EX31_RS09855 orotidine-5'-phosphate decarboxylase low > 89
Kangiella aquimarina DSM 16071 0.20 B158DRAFT_1072 UTP--GlnB (protein PII) uridylyltransferase, GlnD 0.35 B158DRAFT_2331 orotidine-5'-phosphate decarboxylase (EC 4.1.1.23) — —
Erwinia tracheiphila SCR3 0.20 LU632_RS19980 glnD bifunctional uridylyltransferase/uridylyl-removing protein GlnD 0.30 LU632_RS12500 pyrF orotidine-5'-phosphate decarboxylase low > 74
Acinetobacter radioresistens SK82 0.20 MPMX26_01867 Bifunctional uridylyltransferase/uridylyl-removing enzyme 0.30 MPMX26_01242 Orotidine 5'-phosphate decarboxylase low > 36
Vibrio cholerae E7946 ATCC 55056 0.20 CSW01_11520 bifunctional uridylyltransferase/uridylyl-removing protein GlnD 0.33 CSW01_09560 orotidine-5'-phosphate decarboxylase low > 62
Shewanella loihica PV-4 0.20 Shew_2637 PII uridylyl-transferase (RefSeq) 0.30 Shew_1958 orotidine 5'-phosphate decarboxylase (RefSeq) — —
Alteromonas macleodii MIT1002 0.19 MIT1002_01001 PII uridylyl-transferase 0.36 MIT1002_02184 Orotidine 5'-phosphate decarboxylase low > 70
Shewanella amazonensis SB2B 0.19 Sama_1137 PII uridylyl-transferase (RefSeq) 0.31 Sama_1740 orotidine 5'-phosphate decarboxylase (RefSeq) low > 62
Shewanella sp. ANA-3 0.18 Shewana3_2817 PII uridylyl-transferase (RefSeq) 0.32 Shewana3_1981 orotidine 5'-phosphate decarboxylase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.18 SO1626 glnD protein-P-II uridylyltransferase (NCBI ptt file) 0.31 SO2398 pyrF orotidine 5`-phosphate decarboxylase (NCBI ptt file) low > 76
Xanthomonas campestris pv. campestris strain 8004 0.16 Xcc-8004.3543.1 [Protein-PII] uridylyltransferase (EC 2.7.7.59) 0.29 Xcc-8004.5259.1 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) — —
Desulfovibrio vulgaris Hildenborough JW710 0.15 DVU1233 glnD protein-P-II uridylyltransferase, putative (TIGR) 0.24 DVU0901 pyrF orotidine 5`-phosphate decarboxylase (TIGR) — —
Desulfovibrio vulgaris Miyazaki F 0.13 DvMF_0864 UTP-GlnB uridylyltransferase, GlnD (RefSeq) 0.26 DvMF_1137 orotidine 5'-phosphate decarboxylase (RefSeq) low > 51

Not shown: 21 genomes with orthologs for Atu0346 only; 2 genomes with orthologs for Atu0298 only