| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens FW300-N2E3 | 1.0 | AO353_19135 | | aromatic ring-opening dioxygenase LigB | 1.0 | AO353_17535 | | 16S rRNA pseudouridine(516) synthase | 0.30 | 7 |
| Pseudomonas fluorescens GW456-L13 | 0.85 | PfGW456L13_2248 | | FIG074102: hypothetical protein | 0.84 | PfGW456L13_4535 | | Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) | low | > 87 |
| Pseudomonas simiae WCS417 | 0.85 | PS417_08545 | | aromatic ring-opening dioxygenase LigB | 0.82 | PS417_07010 | | pseudouridine synthase | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.84 | Pf1N1B4_264 | | FIG074102: hypothetical protein | 0.88 | Pf1N1B4_3297 | | Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.84 | AO356_03105 | | aromatic ring-opening dioxygenase LigB | 0.87 | AO356_04690 | | 16S rRNA pseudouridine(516) synthase | low | > 104 |
| Pseudomonas fluorescens SBW25-INTG | 0.84 | PFLU_RS08495 | | dioxygenase | 0.81 | PFLU_RS07085 | | pseudouridine synthase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.84 | PFLU_RS08495 | | dioxygenase | 0.81 | PFLU_RS07085 | | pseudouridine synthase | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.83 | Pf6N2E2_2449 | | FIG074102: hypothetical protein | 0.86 | Pf6N2E2_2785 | | Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) | low | > 103 |
| Pseudomonas sp. RS175 | 0.81 | PFR28_00981 | | 4,5-DOPA dioxygenase extradiol | 0.83 | PFR28_00665 | | Ribosomal small subunit pseudouridine synthase A | low | > 88 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.79 | Psyr_3618 | | Catalytic LigB subunit of aromatic ring-opening dioxygenase | 0.77 | Psyr_3981 | | ribosomal small subunit pseudouridine synthase A | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.79 | Psyr_3618 | | Catalytic LigB subunit of aromatic ring-opening dioxygenase | 0.77 | Psyr_3981 | | ribosomal small subunit pseudouridine synthase A | low | > 86 |
| Pseudomonas putida KT2440 | 0.76 | PP_1869 | | 4,5-DOPA-dioxygenase | 0.69 | PP_1409 | | ribosomal small subunit pseudouridine synthase A | 0.15 | 24 |
| Pseudomonas sp. S08-1 | 0.74 | OH686_22555 | | hypothetical protein | 0.68 | OH686_05950 | | SSU rRNA pseudouridine(516) synthase | low | > 80 |
| Rhodanobacter sp. FW510-T8 | 0.54 | OKGIIK_09710 | | Dioxygenase | 0.24 | OKGIIK_09050 | | Pseudouridine synthase | low | > 52 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.53 | Xcc-8004.4645.1 | | FIG074102: hypothetical protein | 0.23 | Xcc-8004.4611.1 | | Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) | low | > 74 |
| Acinetobacter radioresistens SK82 | 0.53 | MPMX26_02302 | | 4,5-DOPA dioxygenase extradiol | 0.21 | MPMX26_01203 | | Ribosomal small subunit pseudouridine synthase A | low | > 36 |
| Dyella japonica UNC79MFTsu3.2 | 0.51 | ABZR86_RS08995 | | class III extradiol ring-cleavage dioxygenase | 0.25 | ABZR86_RS00325 | | 16S rRNA pseudouridine(516) synthase | low | > 74 |
| Herbaspirillum seropedicae SmR1 | 0.49 | HSERO_RS02940 | | hypothetical protein | 0.20 | HSERO_RS08590 | | pseudouridine synthase | low | > 78 |
| Dechlorosoma suillum PS | 0.49 | Dsui_2354 | | hypothetical protein | 0.24 | Dsui_0824 | | pseudouridine synthase family protein | — | — |
| Lysobacter sp. OAE881 | 0.47 | ABIE51_RS06095 | | class III extradiol ring-cleavage dioxygenase | 0.25 | ABIE51_RS18480 | | pseudouridine synthase | low | > 62 |
| Rhodanobacter denitrificans MT42 | 0.47 | LRK55_RS12505 | | class III extradiol ring-cleavage dioxygenase | 0.25 | LRK55_RS15690 | | pseudouridine synthase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.46 | LRK54_RS12805 | | dioxygenase | 0.25 | LRK54_RS15935 | | rRNA pseudouridine synthase | low | > 59 |
| Cupriavidus basilensis FW507-4G11 | 0.46 | RR42_RS19600 | | aromatic ring-opening dioxygenase LigB | 0.26 | RR42_RS15880 | | pseudouridine synthase | low | > 128 |
| Paraburkholderia sabiae LMG 24235 | 0.45 | QEN71_RS27690 | | class III extradiol ring-cleavage dioxygenase | 0.23 | QEN71_RS03150 | | 16S rRNA pseudouridine(516) synthase | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.44 | BPHYT_RS17535 | | extradiol ring-cleavage dioxygenase class III protein subunit B | 0.23 | BPHYT_RS15560 | | pseudouridine synthase | low | > 109 |
| Marinobacter adhaerens HP15 | 0.43 | HP15_934 | | extradiol ring-cleavage dioxygenase, class III enzyme, subunit B | 0.48 | HP15_2675 | | pseudouridine synthase, Rsu | low | > 73 |
| Shewanella loihica PV-4 | 0.43 | Shew_2275 | | extradiol ring-cleavage dioxygenase III subunit B (RefSeq) | 0.50 | Shew_0916 | | pseudouridine synthase (RefSeq) | low | > 60 |
| Ralstonia solanacearum IBSBF1503 | 0.42 | RALBFv3_RS09470 | | dioxygenase | 0.26 | RALBFv3_RS12605 | | 16S rRNA pseudouridine(516) synthase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.42 | UW163_RS04110 | | dioxygenase | 0.26 | UW163_RS00960 | | 16S rRNA pseudouridine(516) synthase | — | — |
| Ralstonia solanacearum GMI1000 | 0.42 | RS_RS00070 | | dioxygenase | 0.25 | RS_RS03390 | | 16S rRNA pseudouridine(516) synthase | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.42 | RPSI07_RS23880 | | dioxygenase | 0.26 | RPSI07_RS20655 | | 16S rRNA pseudouridine(516) synthase | low | > 81 |
| Paraburkholderia graminis OAS925 | 0.42 | ABIE53_003667 | | 4,5-DOPA dioxygenase extradiol | 0.27 | ABIE53_003276 | | 16S rRNA pseudouridine516 synthase | low | > 113 |
| Shewanella amazonensis SB2B | 0.42 | Sama_0409 | | hypothetical protein (RefSeq) | 0.46 | Sama_2785 | | pseudouridine synthase, Rsu (RefSeq) | low | > 62 |
| Pantoea sp. MT58 | 0.39 | IAI47_03120 | | 4,5-DOPA dioxygenase extradiol | 0.42 | IAI47_06585 | | 16S rRNA pseudouridine(516) synthase RsuA | low | > 76 |
| Klebsiella michiganensis M5al | 0.38 | BWI76_RS24415 | | dioxygenase | 0.41 | BWI76_RS19810 | | 16S rRNA pseudouridine(516) synthase | — | — |
| Enterobacter sp. TBS_079 | 0.38 | MPMX20_03885 | | 4,5-DOPA dioxygenase extradiol | 0.41 | MPMX20_03149 | | Ribosomal small subunit pseudouridine synthase A | low | > 85 |
| Enterobacter asburiae PDN3 | 0.37 | EX28DRAFT_3076 | | Uncharacterized conserved protein | 0.41 | EX28DRAFT_0378 | | pseudouridine synthase | low | > 76 |
| Shewanella sp. ANA-3 | 0.37 | Shewana3_1685 | | extradiol ring-cleavage dioxygenase III subunit B (RefSeq) | 0.48 | Shewana3_3175 | | pseudouridine synthase, Rsu (RefSeq) | low | > 73 |
| Serratia liquefaciens MT49 | 0.36 | IAI46_22030 | | 4,5-DOPA dioxygenase extradiol | 0.41 | IAI46_17345 | | 16S rRNA pseudouridine(516) synthase RsuA | low | > 86 |
| Magnetospirillum magneticum AMB-1 | 0.36 | AMB_RS01145 | | dioxygenase | 0.29 | AMB_RS12445 | | rRNA pseudouridine synthase | low | > 64 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.36 | GFF3152 | | Uncharacterized protein ygiD | 0.41 | GFF3753 | | Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) | low | > 78 |
| Variovorax sp. SCN45 | 0.36 | GFF5260 | | Uncharacterized protein ygiD | 0.23 | GFF3076 | | SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19) | low | > 127 |
| Caulobacter crescentus NA1000 Δfur | 0.36 | CCNA_03053 | | dioxygenase | 0.28 | CCNA_01915 | | ribosomal small subunit pseudouridine synthase A | low | > 67 |
| Dickeya dianthicola 67-19 | 0.36 | HGI48_RS01620 | | 4,5-DOPA dioxygenase extradiol | 0.44 | HGI48_RS09200 | | 16S rRNA pseudouridine(516) synthase RsuA | low | > 71 |
| Erwinia tracheiphila SCR3 | 0.36 | LU632_RS20650 | ygiD | 4,5-DOPA dioxygenase extradiol | 0.42 | LU632_RS17595 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | low | > 74 |
| Caulobacter crescentus NA1000 | 0.36 | CCNA_03053 | | dioxygenase | 0.28 | CCNA_01915 | | ribosomal small subunit pseudouridine synthase A | low | > 66 |
| Escherichia coli BW25113 | 0.36 | b3039 | ygiD | predicted dioxygenase (RefSeq) | 0.40 | b2183 | rsuA | 16S rRNA pseudouridylate 516 synthase (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.36 | ECD_02911 | | 4,5- DOPA-extradiol-dioxygenase | 0.40 | ECD_02113 | | 16S rRNA pseudouridine(516) synthase | low | > 61 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.36 | OHPLBJKB_00665 | | 4,5-DOPA dioxygenase extradiol | 0.40 | OHPLBJKB_01526 | | Ribosomal small subunit pseudouridine synthase A | low | > 73 |
| Escherichia coli ECOR27 | 0.36 | NOLOHH_10595 | ygiD | 4,5-DOPA dioxygenase extradiol | 0.40 | NOLOHH_14935 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | low | > 75 |
| Escherichia coli ECOR38 | 0.36 | HEPCGN_17665 | ygiD | 4,5-DOPA dioxygenase extradiol | 0.40 | HEPCGN_22625 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | low | > 87 |
| Escherichia coli ECRC62 | 0.36 | BNILDI_00920 | ygiD | 4,5-DOPA dioxygenase extradiol | 0.40 | BNILDI_13855 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | low | > 75 |
| Dickeya dadantii 3937 | 0.35 | DDA3937_RS01725 | | 4,5-DOPA dioxygenase extradiol | 0.44 | DDA3937_RS09160 | | 16S rRNA pseudouridine(516) synthase RsuA | low | > 74 |
| Escherichia coli ECRC100 | 0.35 | OKFHMN_18790 | ygiD | 4,5-DOPA dioxygenase extradiol | 0.40 | OKFHMN_23360 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | low | > 80 |
| Escherichia coli ECRC101 | 0.35 | MCAODC_09305 | ygiD | 4,5-DOPA dioxygenase extradiol | 0.40 | MCAODC_14410 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | low | > 87 |
| Escherichia coli ECRC99 | 0.35 | KEDOAH_09355 | ygiD | 4,5-DOPA dioxygenase extradiol | 0.40 | KEDOAH_04825 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | — | — |
| Dickeya dianthicola ME23 | 0.35 | DZA65_RS01695 | | 4,5-DOPA dioxygenase extradiol | 0.44 | DZA65_RS09500 | | 16S rRNA pseudouridine(516) synthase RsuA | low | > 75 |
| Escherichia coli ECRC98 | 0.35 | JDDGAC_22425 | ygiD | 4,5-DOPA dioxygenase extradiol | 0.40 | JDDGAC_27320 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | 0.60 | 71 |
| Escherichia coli ECRC102 | 0.35 | NIAGMN_16555 | ygiD | 4,5-DOPA dioxygenase extradiol | 0.40 | NIAGMN_21125 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | — | — |
| Escherichia fergusonii Becca | 0.35 | EFB2_00767 | | 4,5-DOPA dioxygenase extradiol | 0.40 | EFB2_01673 | | Ribosomal small subunit pseudouridine synthase A | low | > 86 |
| Rahnella sp. WP5 | 0.35 | EX31_RS08115 | | 4,5-DOPA dioxygenase extradiol | 0.42 | EX31_RS19195 | | 16S rRNA pseudouridine(516) synthase RsuA | low | > 89 |
| Escherichia coli Nissle 1917 | 0.35 | ECOLIN_RS17550 | | 4,5-DOPA dioxygenase extradiol | 0.40 | ECOLIN_RS12760 | | 16S rRNA pseudouridine(516) synthase RsuA | — | — |
| Pectobacterium carotovorum WPP14 | 0.35 | HER17_RS19840 | | 4,5-DOPA dioxygenase extradiol | 0.42 | HER17_RS12950 | | 16S rRNA pseudouridine(516) synthase RsuA | low | > 75 |
| Variovorax sp. OAS795 | 0.34 | ABID97_RS07060 | | 4,5-DOPA dioxygenase extradiol | 0.22 | ABID97_RS09900 | | 16S rRNA pseudouridine(516) synthase | low | > 91 |
| Pseudomonas stutzeri RCH2 | 0.31 | Psest_2164 | | Uncharacterized conserved protein | 0.62 | Psest_3049 | | pseudouridine synthase | low | > 67 |
Not shown: 18 genomes with orthologs for AO353_19135 only; 2 genomes with orthologs for AO353_17535 only