| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens FW300-N2E3 | 1.0 | AO353_14090 | | alkylphosphonate utilization protein | 1.0 | AO353_02265 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | 0.31 | 12 |
| Pseudomonas simiae WCS417 | 0.98 | PS417_23570 | | hypothetical protein | 0.93 | PS417_19330 | | SAM-dependent methyltransferase | — | — |
| Pseudomonas fluorescens SBW25 | 0.98 | PFLU_RS25385 | | alkylphosphonate utilization protein | 0.94 | PFLU_RS21295 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.98 | PFLU_RS25385 | | alkylphosphonate utilization protein | 0.94 | PFLU_RS21295 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.97 | Pf1N1B4_2795 | | Alkylphosphonate utilization operon protein PhnA | 0.98 | Pf1N1B4_3777 | | Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.97 | PfGW456L13_1467 | | Alkylphosphonate utilization operon protein PhnA | 0.96 | PfGW456L13_4168 | | Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p | 0.33 | 13 |
| Pseudomonas fluorescens FW300-N2C3 | 0.97 | AO356_15790 | | alkylphosphonate utilization protein | 0.96 | AO356_19525 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.95 | Pf6N2E2_5098 | | Alkylphosphonate utilization operon protein PhnA | 0.96 | Pf6N2E2_5819 | | Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p | low | > 103 |
| Pseudomonas putida KT2440 | 0.93 | PP_0686 | | conserved protein of unknown function | 0.88 | PP_1827 | | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase | 0.15 | 13 |
| Pseudomonas sp. RS175 | 0.88 | PFR28_03774 | | hypothetical protein | 0.95 | PFR28_03129 | | 50S ribosomal protein L3 glutamine methyltransferase | low | > 88 |
| Pseudomonas sp. S08-1 | 0.87 | OH686_07235 | | Protein PhnA | 0.84 | OH686_00665 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | low | > 80 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.83 | Psyr_0863 | | PhnA protein | 0.89 | Psyr_1850 | | [LSU ribosomal protein L3P]-glutamine N5-methyltransferase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.83 | Psyr_0863 | | PhnA protein | 0.89 | Psyr_1850 | | [LSU ribosomal protein L3P]-glutamine N5-methyltransferase | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.79 | Psest_0770 | | alkylphosphonate utilization operon protein PhnA | 0.84 | Psest_1995 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | low | > 67 |
| Ralstonia solanacearum PSI07 | 0.77 | RPSI07_RS06075 | | hypothetical protein | 0.42 | RPSI07_RS17185 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.77 | RS_RS23785 | | hypothetical protein | 0.42 | RS_RS06960 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.76 | RALBFv3_RS17545 | | alkylphosphonate utilization protein | 0.42 | RALBFv3_RS00290 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.76 | UW163_RS21605 | | alkylphosphonate utilization protein | 0.42 | UW163_RS13620 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | — | — |
| Marinobacter adhaerens HP15 | 0.73 | HP15_843 | | PhnA protein | 0.58 | HP15_1839 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | low | > 73 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.71 | GFF1466 | | Alkylphosphonate utilization operon protein PhnA | 0.55 | GFF1951 | | Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p | low | > 78 |
| Escherichia coli ECRC62 | 0.70 | BNILDI_06620 | yjdM | Protein YjdM | 0.56 | BNILDI_13165 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 75 |
| Enterobacter asburiae PDN3 | 0.70 | EX28DRAFT_4198 | | alkylphosphonate utilization operon protein PhnA | 0.55 | EX28DRAFT_0274 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | low | > 76 |
| Escherichia coli BW25113 | 0.70 | b4108 | phnA | hypothetical protein (NCBI) | 0.56 | b2330 | yfcB | putative adenine-specific methylase (VIMSS) | low | > 76 |
| Escherichia fergusonii Becca | 0.70 | EFB2_04475 | | hypothetical protein | 0.56 | EFB2_01528 | | 50S ribosomal protein L3 glutamine methyltransferase | low | > 86 |
| Enterobacter sp. TBS_079 | 0.70 | MPMX20_00327 | | hypothetical protein | 0.55 | MPMX20_03265 | | 50S ribosomal protein L3 glutamine methyltransferase | low | > 85 |
| Escherichia coli ECRC102 | 0.70 | NIAGMN_10450 | yjdM | Protein YjdM | 0.56 | NIAGMN_20385 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | — | — |
| Serratia liquefaciens MT49 | 0.70 | IAI46_06020 | | phnA family protein | 0.54 | IAI46_18030 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 86 |
| Escherichia coli BL21 | 0.70 | ECD_03979 | | zinc-ribbon family protein | 0.56 | ECD_02255 | | N5-glutamine methyltransferase | low | > 61 |
| Escherichia coli ECRC101 | 0.70 | MCAODC_03115 | yjdM | Protein YjdM | 0.56 | MCAODC_13650 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 87 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.70 | OHPLBJKB_03937 | | hypothetical protein | 0.56 | OHPLBJKB_01375 | | 50S ribosomal protein L3 glutamine methyltransferase | low | > 73 |
| Escherichia coli Nissle 1917 | 0.70 | ECOLIN_RS23775 | | zinc ribbon domain-containing protein YjdM | 0.56 | ECOLIN_RS13495 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 55 |
| Escherichia coli ECRC98 | 0.70 | JDDGAC_16240 | yjdM | Protein YjdM | 0.56 | JDDGAC_26570 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 86 |
| Escherichia coli ECOR27 | 0.70 | NOLOHH_04870 | yjdM | Protein YjdM | 0.56 | NOLOHH_14245 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 75 |
| Escherichia coli ECOR38 | 0.70 | HEPCGN_11240 | yjdM | Protein YjdM | 0.56 | HEPCGN_21815 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 87 |
| Escherichia coli ECRC99 | 0.70 | KEDOAH_15560 | yjdM | Protein YjdM | 0.56 | KEDOAH_05585 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | — | — |
| Escherichia coli ECRC100 | 0.70 | OKFHMN_12605 | yjdM | Protein YjdM | 0.56 | OKFHMN_22610 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 80 |
| Pectobacterium carotovorum WPP14 | 0.69 | HER17_RS16190 | | alkylphosphonate utilization protein | 0.55 | HER17_RS06930 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 75 |
| Klebsiella michiganensis M5al | 0.69 | BWI76_RS02240 | | alkylphosphonate utilization operon protein PhnA | 0.53 | BWI76_RS20440 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 92 |
| Dickeya dadantii 3937 | 0.67 | DDA3937_RS05305 | | alkylphosphonate utilization protein | 0.55 | DDA3937_RS14585 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 74 |
| Dickeya dianthicola 67-19 | 0.66 | HGI48_RS05390 | | alkylphosphonate utilization protein | 0.55 | HGI48_RS14535 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 71 |
| Dickeya dianthicola ME23 | 0.66 | DZA65_RS05690 | | alkylphosphonate utilization protein | 0.55 | DZA65_RS15470 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | — | — |
| Acinetobacter radioresistens SK82 | 0.66 | MPMX26_00660 | | hypothetical protein | 0.50 | MPMX26_01339 | | 50S ribosomal protein L3 glutamine methyltransferase | low | > 36 |
| Rahnella sp. WP5 | 0.65 | EX31_RS19010 | | alkylphosphonate utilization protein | 0.54 | EX31_RS19690 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 89 |
| Herbaspirillum seropedicae SmR1 | 0.64 | HSERO_RS13640 | | hypothetical protein | 0.45 | HSERO_RS10785 | | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase | low | > 78 |
| Erwinia tracheiphila SCR3 | 0.64 | LU632_RS22225 | | alkylphosphonate utilization protein | 0.55 | LU632_RS07770 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 74 |
| Shewanella loihica PV-4 | 0.63 | Shew_1931 | | alkylphosphonate utilization operon protein PhnA (RefSeq) | 0.57 | Shew_2417 | | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) | low | > 60 |
| Azospirillum brasilense Sp245 | 0.62 | AZOBR_RS09590 | | putative Zn-ribbon-containing protein involved in phosphonate metabolism PhnA-like protein | 0.41 | AZOBR_RS10950 | | SAM-dependent methyltransferase | low | > 97 |
| Pantoea sp. MT58 | 0.61 | IAI47_04280 | | alkylphosphonate utilization protein | 0.55 | IAI47_06145 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 76 |
| Ralstonia sp. UNC404CL21Col | 0.55 | ABZR87_RS12375 | | zinc ribbon domain-containing protein YjdM | 0.43 | ABZR87_RS11740 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 80 |
| Burkholderia phytofirmans PsJN | 0.54 | BPHYT_RS24510 | | alkylphosphonate utilization protein | 0.40 | BPHYT_RS12205 | | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase | low | > 109 |
| Azospirillum sp. SherDot2 | 0.54 | MPMX19_01079 | | hypothetical protein | 0.40 | MPMX19_00751 | | 50S ribosomal protein L3 glutamine methyltransferase | low | > 112 |
| Cupriavidus basilensis FW507-4G11 | 0.50 | RR42_RS12350 | | alkylphosphonate utilization protein | 0.39 | RR42_RS11955 | | SAM-dependent methyltransferase | low | > 128 |
| Alteromonas macleodii MIT1002 | 0.50 | MIT1002_00555 | | putative alkylphosphonate utilization operon protein PhnA | 0.54 | MIT1002_01228 | | 50S ribosomal protein L3 glutamine methyltransferase | low | > 70 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.48 | H281DRAFT_05381 | | phosphonoacetate hydrolase | 0.41 | H281DRAFT_00596 | | [LSU ribosomal protein L3P]-glutamine N5-methyltransferase | low | > 103 |
| Dechlorosoma suillum PS | 0.46 | Dsui_0559 | | alkylphosphonate utilization operon protein PhnA | 0.44 | Dsui_2712 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | low | > 51 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.45 | Xcc-8004.3628.1 | | Alkylphosphonate utilization operon protein PhnA | 0.45 | Xcc-8004.1953.1 | | Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p | low | > 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.44 | ABZR86_RS00195 | | zinc ribbon domain-containing protein YjdM | 0.46 | ABZR86_RS08050 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 74 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS15460 | | zinc ribbon domain-containing protein YjdM | 0.47 | LRK55_RS01515 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS15710 | | alkylphosphonate utilization protein | 0.46 | LRK54_RS01735 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 59 |
| Lysobacter sp. OAE881 | 0.43 | ABIE51_RS11320 | | zinc ribbon domain-containing protein YjdM | 0.43 | ABIE51_RS08215 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 62 |
| Rhodanobacter sp. FW510-T8 | 0.43 | OKGIIK_04380 | | Phosphonoacetate hydrolase | 0.46 | OKGIIK_04795 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 52 |
| Acidovorax sp. GW101-3H11 | 0.42 | Ac3H11_4421 | | Alkylphosphonate utilization operon protein PhnA | 0.32 | Ac3H11_2299 | | Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p | — | — |
Not shown: 7 genomes with orthologs for AO353_14090 only; 12 genomes with orthologs for AO353_02265 only