| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Ralstonia sp. UNC404CL21Col | 1.0 | ABZR87_RS15265 | | radical SAM family heme chaperone HemW | 1.0 | ABZR87_RS01745 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.61 | 9 |
| Ralstonia solanacearum PSI07 | 0.94 | RPSI07_RS13830 | | oxygen-independent coproporphyrinogen III oxidase-like protein | 0.79 | RPSI07_RS11160 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Ralstonia solanacearum UW163 | 0.90 | UW163_RS10365 | | oxygen-independent coproporphyrinogen III oxidase-like protein | 0.78 | UW163_RS07545 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.90 | RALBFv3_RS03355 | | oxygen-independent coproporphyrinogen III oxidase-like protein | 0.78 | RALBFv3_RS06080 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Ralstonia solanacearum GMI1000 | 0.89 | RS_RS10840 | | oxygen-independent coproporphyrinogen III oxidase-like protein | 0.79 | RS_RS14030 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.69 | RR42_RS04880 | | coproporphyrinogen III oxidase | 0.58 | RR42_RS17865 | | N-acetyl-anhydromuranmyl-L-alanine amidase | low | > 128 |
| Paraburkholderia graminis OAS925 | 0.66 | ABIE53_003236 | | putative oxygen-independent coproporphyrinogen III oxidase | 0.58 | ABIE53_003579 | | AmpD protein | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.66 | BPHYT_RS15335 | | coproporphyrinogen III oxidase | 0.56 | BPHYT_RS17065 | | N-acetyl-anhydromuranmyl-L-alanine amidase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.66 | H281DRAFT_04010 | | oxygen-independent coproporphyrinogen-3 oxidase | 0.58 | H281DRAFT_06273 | | AmpD protein | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.66 | QEN71_RS03635 | | radical SAM family heme chaperone HemW | 0.57 | QEN71_RS27225 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 153 |
| Herbaspirillum seropedicae SmR1 | 0.63 | HSERO_RS10665 | | coproporphyrinogen III oxidase | 0.52 | HSERO_RS01880 | | N-acetyl-anhydromuranmyl-L-alanine amidase | low | > 78 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.57 | GFF3256 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | 0.47 | GFF594 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | — | — |
| Variovorax sp. SCN45 | 0.56 | GFF2383 | | Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW | 0.50 | GFF4433 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase | low | > 127 |
| Variovorax sp. OAS795 | 0.55 | ABID97_RS23630 | | radical SAM family heme chaperone HemW | 0.49 | ABID97_RS06410 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Acidovorax sp. GW101-3H11 | 0.52 | Ac3H11_3672 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | 0.44 | Ac3H11_4020 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | — | — |
| Castellaniella sp019104865 MT123 | 0.52 | ABCV34_RS03525 | | radical SAM family heme chaperone HemW | 0.46 | ABCV34_RS09025 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 48 |
| Dechlorosoma suillum PS | 0.52 | Dsui_0491 | | putative oxygen-independent coproporphyrinogen III oxidase | 0.51 | Dsui_0134 | | negative regulator of beta-lactamase expression | low | > 51 |
| Kangiella aquimarina DSM 16071 | 0.46 | B158DRAFT_0201 | | coproporphyrinogen III oxidase, anaerobic (EC 1.3.99.22) | 0.45 | B158DRAFT_2134 | | Negative regulator of beta-lactamase expression | low | > 40 |
| Pseudomonas simiae WCS417 | 0.45 | PS417_26760 | | oxidase | 0.49 | PS417_03935 | | N-acetyl-anhydromuranmyl-L-alanine amidase | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.45 | PFLU_RS28405 | | radical SAM family heme chaperone HemW | 0.50 | PFLU_RS03980 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.45 | PFLU_RS28405 | | radical SAM family heme chaperone HemW | 0.50 | PFLU_RS03980 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.44 | Pf6N2E2_4593 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | 0.49 | Pf6N2E2_3344 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | low | > 103 |
| Pseudomonas fluorescens FW300-N2E3 | 0.44 | AO353_08200 | | coproporphyrinogen III oxidase | 0.49 | AO353_05510 | | N-acetyl-anhydromuranmyl-L-alanine amidase | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.44 | Pf1N1B4_2334 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | 0.49 | Pf1N1B4_1151 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | — | — |
| Pseudomonas sp. S08-1 | 0.44 | OH686_11020 | | Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW | 0.50 | OH686_16530 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase | low | > 80 |
| Pseudomonas fluorescens GW456-L13 | 0.44 | PfGW456L13_1003 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | 0.49 | PfGW456L13_5081 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.43 | AO356_13390 | | coproporphyrinogen III oxidase | 0.49 | AO356_07360 | | N-acetyl-anhydromuranmyl-L-alanine amidase | low | > 104 |
| Pseudomonas sp. RS175 | 0.43 | PFR28_04249 | | Heme chaperone HemW | 0.50 | PFR28_00100 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 88 |
| Enterobacter sp. TBS_079 | 0.43 | MPMX20_03813 | | Heme chaperone HemW | 0.45 | MPMX20_00801 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 85 |
| Pseudomonas putida KT2440 | 0.43 | PP_5101 | | coproporphyrinogen/heterocyclic compound oxidase (aerobic) | 0.45 | PP_0789 | | N-acetyl-anhydromuramyl-L-alanine-amidase | 0.52 | 18 |
| Pseudomonas syringae pv. syringae B728a | 0.43 | Psyr_0471 | | coproporphyrinogen III oxidase, anaerobic | 0.49 | Psyr_0817 | | N-acetylmuramoyl-L-alanine amidase, family 2 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.43 | Psyr_0471 | | coproporphyrinogen III oxidase, anaerobic | 0.49 | Psyr_0817 | | N-acetylmuramoyl-L-alanine amidase, family 2 | low | > 86 |
| Serratia liquefaciens MT49 | 0.43 | IAI46_21435 | | radical SAM family heme chaperone HemW | 0.44 | IAI46_03535 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 86 |
| Escherichia coli BL21 | 0.42 | ECD_02785 | | HemN family putative oxidoreductase | 0.46 | ECD_00109 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; murein amidase | low | > 61 |
| Pectobacterium carotovorum WPP14 | 0.42 | HER17_RS03785 | | radical SAM family heme chaperone HemW | 0.46 | HER17_RS03260 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 75 |
| Shewanella oneidensis MR-1 | 0.42 | SO3359 | | oxygen-independent coproporphyrinogen III oxidase, putative (NCBI ptt file) | 0.41 | SO0421 | ampD | AmpD protein (NCBI ptt file) | low | > 76 |
| Enterobacter asburiae PDN3 | 0.42 | EX28DRAFT_2993 | | putative oxygen-independent coproporphyrinogen III oxidase | 0.46 | EX28DRAFT_3703 | | N-acetylmuramoyl-L-alanine amidase | — | — |
| Escherichia coli ECOR38 | 0.42 | HEPCGN_18540 | hemW | radical SAM family heme chaperone HemW | 0.47 | HEPCGN_08505 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 87 |
| Klebsiella michiganensis M5al | 0.42 | BWI76_RS24120 | | YggW family oxidoreductase | 0.46 | BWI76_RS04850 | | N-acetylmuramoyl-L-alanine amidase | low | > 92 |
| Escherichia fergusonii Becca | 0.42 | EFB2_00947 | | Heme chaperone HemW | 0.47 | EFB2_03939 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 86 |
| Dickeya dadantii 3937 | 0.42 | DDA3937_RS17325 | | radical SAM family heme chaperone HemW | 0.47 | DDA3937_RS17945 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 74 |
| Escherichia coli ECRC99 | 0.42 | KEDOAH_08905 | hemW | radical SAM family heme chaperone HemW | 0.47 | KEDOAH_17630 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia coli ECRC102 | 0.42 | NIAGMN_17000 | hemW | radical SAM family heme chaperone HemW | 0.47 | NIAGMN_08375 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia coli ECRC101 | 0.42 | MCAODC_09755 | hemW | radical SAM family heme chaperone HemW | 0.47 | MCAODC_01040 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 87 |
| Shewanella sp. ANA-3 | 0.42 | Shewana3_1188 | | putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) | 0.42 | Shewana3_0423 | | N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) | low | > 73 |
| Escherichia coli ECRC100 | 0.42 | OKFHMN_19235 | hemW | radical SAM family heme chaperone HemW | 0.47 | OKFHMN_10525 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 80 |
| Escherichia coli ECRC98 | 0.42 | JDDGAC_22865 | hemW | radical SAM family heme chaperone HemW | 0.47 | JDDGAC_14120 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.81 | 61 |
| Pseudomonas stutzeri RCH2 | 0.42 | Psest_0276 | | putative oxygen-independent coproporphyrinogen III oxidase | 0.46 | Psest_0725 | | Negative regulator of beta-lactamase expression | low | > 67 |
| Escherichia coli Nissle 1917 | 0.42 | ECOLIN_RS16435 | | radical SAM family heme chaperone HemW | 0.47 | ECOLIN_RS00590 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 55 |
| Escherichia coli BW25113 | 0.42 | b2955 | yggW | coproporphyrinogen III oxidase (NCBI) | 0.46 | b0110 | ampD | N-acetyl-anhydromuranmyl-L-alanine amidase (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.42 | OHPLBJKB_00761 | | Oxygen-independent coproporphyrinogen-III oxidase-like protein YqeR | 0.46 | OHPLBJKB_03551 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 73 |
| Dickeya dianthicola 67-19 | 0.42 | HGI48_RS17370 | | radical SAM family heme chaperone HemW | 0.48 | HGI48_RS17875 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 71 |
| Escherichia coli ECRC62 | 0.41 | BNILDI_09685 | hemW | radical SAM family heme chaperone HemW | 0.46 | BNILDI_08740 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 75 |
| Dickeya dianthicola ME23 | 0.41 | DZA65_RS18460 | | radical SAM family heme chaperone HemW | 0.48 | DZA65_RS19020 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 75 |
| Rahnella sp. WP5 | 0.41 | EX31_RS02710 | | radical SAM family heme chaperone HemW | 0.44 | EX31_RS03510 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 89 |
| Escherichia coli ECOR27 | 0.41 | NOLOHH_11105 | hemW | radical SAM family heme chaperone HemW | 0.46 | NOLOHH_02870 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 75 |
| Pantoea sp. MT58 | 0.41 | IAI47_03580 | | radical SAM family heme chaperone HemW | 0.41 | IAI47_15840 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.41 | GFF3058 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | 0.46 | GFF129 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | low | > 78 |
| Vibrio cholerae E7946 ATCC 55056 | 0.41 | CSW01_02425 | | YggW family oxidoreductase | 0.41 | CSW01_12260 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 62 |
| Shewanella loihica PV-4 | 0.40 | Shew_1131 | | putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) | 0.43 | Shew_3434 | | N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.39 | Sama_2483 | | oxygen-independent coproporphyrinogen III oxidase, putative (RefSeq) | 0.48 | Sama_0372 | | N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.38 | MIT1002_00939 | | Oxygen-independent coproporphyrinogen-III oxidase 1 | 0.44 | MIT1002_03006 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 70 |
| Marinobacter adhaerens HP15 | 0.37 | HP15_280 | | putative oxygen-independent coproporphyrinogen III oxidase | 0.45 | HP15_1307 | | N-acetyl-anhydromuranmyl-L-alanine amidase | — | — |
| Acinetobacter radioresistens SK82 | 0.37 | MPMX26_00308 | | Heme chaperone HemW | 0.50 | MPMX26_00043 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 36 |
Not shown: 27 genomes with orthologs for ABZR87_RS15265 only; 0 genomes with orthologs for ABZR87_RS01745 only