Conservation of cofitness between Shew_2934 and Shew_1385 in Shewanella loihica PV-4

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella loihica PV-4 1.0 Shew_2934 SPOUT methyltransferase superfamily protein (RefSeq) 1.0 Shew_1385 chemotaxis phosphatase, CheZ (RefSeq) 0.60 9
Shewanella amazonensis SB2B 0.94 Sama_2587 rRNA large subunit methyltransferase (RefSeq) 0.77 Sama_2278 putative chemotaxis phosphatase, CheZ (RefSeq) low > 62
Shewanella sp. ANA-3 0.93 Shewana3_0996 rRNA large subunit methyltransferase (RefSeq) 0.76 Shewana3_1361 chemotaxis phosphatase, CheZ (RefSeq) — —
Shewanella oneidensis MR-1 0.93 SO1169 conserved hypothetical protein TIGR00246 (NCBI ptt file) 0.74 SO3208 cheZ chemotaxis protein CheZ (NCBI ptt file) low > 76
Pantoea sp. MT58 0.82 IAI47_14020 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.24 IAI47_08340 protein phosphatase CheZ 0.49 76
Erwinia tracheiphila SCR3 0.82 LU632_RS16370 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.23 LU632_RS13515 cheZ protein phosphatase CheZ low > 74
Escherichia coli Nissle 1917 0.81 ECOLIN_RS03465 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.22 ECOLIN_RS10745 protein phosphatase CheZ — —
Vibrio cholerae E7946 ATCC 55056 0.81 CSW01_04865 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.48 CSW01_10325 protein phosphatase CheZ low > 62
Escherichia coli BW25113 0.81 b0636 ybeA hypothetical protein (NCBI) 0.22 b1881 cheZ chemotaxis regulator, protein phosphatase for CheY (NCBI) low > 76
Escherichia coli BL21 0.81 ECD_00605 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent 0.22 ECD_01852 chemotaxis regulator, protein phosphatase for CheY — —
Dickeya dianthicola 67-19 0.81 HGI48_RS06220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.24 HGI48_RS13560 protein phosphatase CheZ — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.81 OHPLBJKB_03070 Ribosomal RNA large subunit methyltransferase H 0.22 OHPLBJKB_01847 Protein phosphatase CheZ — —
Escherichia coli ECRC102 0.81 NIAGMN_05415 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.21 NIAGMN_01900 cheZ protein phosphatase CheZ — —
Escherichia coli ECRC98 0.81 JDDGAC_11005 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.21 JDDGAC_00735 cheZ protein phosphatase CheZ — —
Escherichia coli ECRC99 0.81 KEDOAH_20610 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.21 KEDOAH_01945 cheZ protein phosphatase CheZ — —
Escherichia coli ECOR27 0.81 NOLOHH_23735 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.22 NOLOHH_16600 cheZ protein phosphatase CheZ — —
Pectobacterium carotovorum WPP14 0.81 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.23 HER17_RS08130 protein phosphatase CheZ low > 75
Escherichia coli ECRC101 0.81 MCAODC_26575 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.21 MCAODC_19245 cheZ protein phosphatase CheZ — —
Escherichia coli ECRC101 0.81 OKFHMN_07360 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.21 OKFHMN_26160 cheZ protein phosphatase CheZ — —
Escherichia coli ECRC62 0.81 BNILDI_21745 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.22 BNILDI_15390 cheZ protein phosphatase CheZ — —
Escherichia fergusonii Becca 0.81 EFB2_03456 Ribosomal RNA large subunit methyltransferase H 0.22 EFB2_02062 Protein phosphatase CheZ low > 86
Escherichia coli ECOR38 0.81 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.22 HEPCGN_04580 cheZ protein phosphatase CheZ low > 85
Dickeya dianthicola ME23 0.80 DZA65_RS06565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.24 DZA65_RS14045 protein phosphatase CheZ low > 75
Dickeya dadantii 3937 0.80 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.24 DDA3937_RS13515 protein phosphatase CheZ — —
Rahnella sp. WP5 0.80 EX31_RS23125 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.21 EX31_RS11350 protein phosphatase CheZ low > 89
Serratia liquefaciens MT49 0.80 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.22 IAI46_16005 protein phosphatase CheZ low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.80 GFF4549 LSU m3Psi1915 methyltransferase RlmH 0.23 GFF1662 Chemotaxis response - phosphatase CheZ low > 78
Enterobacter asburiae PDN3 0.79 EX28DRAFT_2327 rRNA large subunit m3Psi methyltransferase RlmH 0.24 EX28DRAFT_0675 Chemotaxis protein — —
Enterobacter sp. TBS_079 0.79 MPMX20_01295 Ribosomal RNA large subunit methyltransferase H 0.24 MPMX20_02785 Protein phosphatase CheZ low > 85
Alteromonas macleodii MIT1002 0.76 MIT1002_01852 Ribosomal RNA large subunit methyltransferase H 0.52 MIT1002_01105 chemotaxis regulator CheZ — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_4366 Protein of unknown function DUF163 0.42 Psyr_3435 chemotaxis phosphatase, CheZ low > 86
Pseudomonas putida KT2440 0.60 PP_4808 23S rRNA m3psi1915 methyltransferase 0.40 PP_4339 Protein phosphatase CheZ low > 96
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_4366 Protein of unknown function DUF163 0.42 Psyr_3435 chemotaxis phosphatase, CheZ — —
Pseudomonas fluorescens SBW25 0.60 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.42 PFLU_RS21650 protein phosphatase CheZ low > 109
Pseudomonas fluorescens SBW25-INTG 0.60 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.42 PFLU_RS21650 protein phosphatase CheZ low > 109
Pseudomonas simiae WCS417 0.60 PS417_24730 50S rRNA methyltransferase 0.42 PS417_19685 protein phosphatase — —
Pseudomonas sp. RS175 0.60 PFR28_03869 Ribosomal RNA large subunit methyltransferase H 0.41 PFR28_00854 Protein phosphatase CheZ low > 88
Pseudomonas fluorescens FW300-N1B4 0.59 Pf1N1B4_2691 LSU m3Psi1915 methyltransferase RlmH 0.40 Pf1N1B4_3628 Chemotaxis response - phosphatase CheZ — —
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_4996 LSU m3Psi1915 methyltransferase RlmH 0.40 Pf6N2E2_2571 Chemotaxis response - phosphatase CheZ low > 103
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_06480 50S rRNA methyltransferase 0.41 AO353_18795 protein phosphatase low > 101
Pseudomonas sp. S08-1 0.59 OH686_09325 rRNA large subunit m3Psi methyltransferase RlmH 0.40 OH686_02720 Chemotaxis response - phosphatase CheZ low > 80
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_15305 50S rRNA methyltransferase 0.41 AO356_03720 protein phosphatase low > 104
Pseudomonas fluorescens GW456-L13 0.59 PfGW456L13_1359 LSU m3Psi1915 methyltransferase RlmH 0.40 PfGW456L13_4329 Chemotaxis response - phosphatase CheZ low > 87
Pseudomonas stutzeri RCH2 0.57 Psest_0511 rRNA large subunit m3Psi methyltransferase RlmH 0.40 Psest_1742 Chemotaxis protein low > 67
Dyella japonica UNC79MFTsu3.2 0.53 ABZR86_RS09055 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.16 ABZR86_RS20275 protein phosphatase CheZ — —
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_09750 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.14 OKGIIK_02840 cheZ chemotaxis protein CheZ — —
Rhodanobacter denitrificans MT42 0.52 LRK55_RS02450 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.14 LRK55_RS13330 protein phosphatase CheZ — —
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS02695 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.14 LRK54_RS13590 protein phosphatase CheZ — —
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS24420 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.22 QEN71_RS28975 protein phosphatase CheZ low > 153
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS06385 ribosomal RNA large subunit methyltransferase H 0.23 BPHYT_RS18960 chemotaxis protein CheZ low > 109
Paraburkholderia graminis OAS925 0.49 ABIE53_001541 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.22 ABIE53_000117 chemotaxis protein CheZ — —
Herbaspirillum seropedicae SmR1 0.49 HSERO_RS17780 50S rRNA methyltransferase 0.26 HSERO_RS10135 chemotaxis protein CheZ low > 78
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS04710 50S rRNA methyltransferase 0.24 RR42_RS35775 chemotaxis protein CheZ low > 128
Ralstonia solanacearum PSI07 0.49 RPSI07_RS13660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.26 RPSI07_RS06220 protein phosphatase CheZ low > 81
Ralstonia solanacearum GMI1000 0.49 RS_RS11015 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.26 RS_RS03740 protein phosphatase CheZ — —
Paraburkholderia bryophila 376MFSha3.1 0.49 H281DRAFT_04517 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.22 H281DRAFT_05749 chemotaxis protein CheZ low > 103
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS15430 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.26 ABZR87_RS18000 protein phosphatase CheZ low > 80
Castellaniella sp019104865 MT123 0.48 ABCV34_RS02530 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.25 ABCV34_RS05805 protein phosphatase CheZ low > 48
Acidovorax sp. GW101-3H11 0.48 Ac3H11_2418 LSU m3Psi1915 methyltransferase RlmH 0.20 Ac3H11_1386 Chemotaxis response - phosphatase CheZ low > 79
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS03565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.26 RALBFv3_RS17425 protein phosphatase CheZ low > 76
Ralstonia solanacearum UW163 0.48 UW163_RS10105 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.26 UW163_RS21725 protein phosphatase CheZ — —
Variovorax sp. SCN45 0.46 GFF298 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase (EC 2.1.1.177) 0.24 GFF5769 Chemotaxis response - phosphatase CheZ low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF4529 LSU m3Psi1915 methyltransferase RlmH 0.19 GFF1434 Chemotaxis response - phosphatase CheZ low > 90

Not shown: 32 genomes with orthologs for Shew_2934 only; 0 genomes with orthologs for Shew_1385 only