Conservation of cofitness between BT0976 and BT4331 in Bacteroides thetaiotaomicron VPI-5482

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT0976 putative transport protein (NCBI ptt file) 1.0 BT4331 conserved hypothetical protein (NCBI ptt file) 0.29 20
Bacteroides ovatus ATCC 8483 0.83 BACOVA_00782 transporter, major facilitator family protein 0.97 BACOVA_05134 hypothetical protein low > 94
Pedobacter sp. GW460-11-11-14-LB5 0.29 CA265_RS24170 MFS transporter 0.32 CA265_RS19815 RlmI/RlmK family 23S rRNA methyltransferase low > 88
Echinicola vietnamensis KMM 6221, DSM 17526 0.29 Echvi_2296 Arabinose efflux permease 0.54 Echvi_3350 Predicted SAM-dependent methyltransferases low > 79
Mucilaginibacter yixingensis YX-36 DSM 26809 0.28 ABZR88_RS04970 MFS transporter 0.31 ABZR88_RS22040 class I SAM-dependent rRNA methyltransferase low > 71
Pseudomonas stutzeri RCH2 0.16 Psest_2095 Arabinose efflux permease 0.20 Psest_0236 Predicted SAM-dependent methyltransferases low > 67
Erwinia tracheiphila SCR3 0.15 LU632_RS25535 MFS transporter 0.32 LU632_RS10090 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI low > 74
Pseudomonas syringae pv. syringae B728a ΔmexB 0.14 Psyr_3360 Major facilitator superfamily 0.19 Psyr_4764 SAM-dependent methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.14 Psyr_3360 Major facilitator superfamily 0.19 Psyr_4764 SAM-dependent methyltransferase low > 86
Shewanella amazonensis SB2B 0.14 Sama_2920 major facilitator transporter (RefSeq) 0.32 Sama_2965 putative SAM-dependent methyltransferase (RefSeq) low > 62
Pseudomonas fluorescens SBW25-INTG 0.14 PFLU_RS10350 MFS transporter 0.20 PFLU_RS28525 class I SAM-dependent rRNA methyltransferase low > 109
Pseudomonas fluorescens SBW25 0.14 PFLU_RS10350 MFS transporter 0.20 PFLU_RS28525 class I SAM-dependent rRNA methyltransferase low > 109
Serratia liquefaciens MT49 0.14 IAI46_17440 MFS transporter 0.32 IAI46_08925 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI low > 86
Rhodanobacter denitrificans MT42 0.14 LRK55_RS01620 MFS transporter 0.21 LRK55_RS06665 class I SAM-dependent rRNA methyltransferase low > 63
Rhodanobacter denitrificans FW104-10B01 0.14 LRK54_RS01830 MFS transporter 0.22 LRK54_RS06920 class I SAM-dependent rRNA methyltransferase low > 59
Ralstonia sp. UNC404CL21Col 0.14 ABZR87_RS08125 MFS transporter 0.36 ABZR87_RS05070 class I SAM-dependent rRNA methyltransferase low > 80
Burkholderia phytofirmans PsJN 0.14 BPHYT_RS01900 amino acid ABC transporter permease 0.34 BPHYT_RS01650 23S rRNA methyltransferase low > 109
Pseudomonas sp. RS175 0.14 PFR28_02856 Inner membrane protein YbjJ 0.20 PFR28_04274 Ribosomal RNA large subunit methyltransferase I low > 88
Azospirillum sp. SherDot2 0.14 MPMX19_02660 Inner membrane protein YbjJ 0.21 MPMX19_00203 Ribosomal RNA large subunit methyltransferase I low > 112
Ralstonia solanacearum UW163 0.13 UW163_RS01380 MFS transporter 0.35 UW163_RS03910 class I SAM-dependent rRNA methyltransferase — —
Ralstonia solanacearum IBSBF1503 0.13 RALBFv3_RS12225 MFS transporter 0.35 RALBFv3_RS09670 class I SAM-dependent rRNA methyltransferase low > 76
Pseudomonas simiae WCS417 0.13 PS417_09770 MFS transporter 0.20 PS417_26880 SAM-dependent methyltransferase low > 88
Pantoea sp. MT58 0.13 IAI47_06485 MFS transporter 0.33 IAI47_12595 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI low > 76
Paraburkholderia sabiae LMG 24235 0.13 QEN71_RS39115 MFS transporter 0.36 QEN71_RS00350 class I SAM-dependent rRNA methyltransferase low > 153
Pseudomonas fluorescens GW456-L13 0.13 PfGW456L13_2443 Membrane protein mosC 0.20 PfGW456L13_977 LSU m5C1962 methyltransferase RlmI low > 87
Azospirillum brasilense Sp245 0.13 AZOBR_RS18830 MFS transporter 0.22 AZOBR_RS01190 SAM-dependent methyltransferase low > 97
Paraburkholderia graminis OAS925 0.13 ABIE53_000462 fucose permease 0.34 ABIE53_000425 23S rRNA (cytosine1962-C5)-methyltransferase low > 113
Enterobacter sp. TBS_079 0.13 MPMX20_01483 Inner membrane protein YbjJ 0.33 MPMX20_01617 Ribosomal RNA large subunit methyltransferase I low > 85
Pseudomonas fluorescens FW300-N2C3 0.13 AO356_21230 MFS transporter 0.20 AO356_13260 SAM-dependent methyltransferase low > 104
Paraburkholderia bryophila 376MFSha3.1 0.13 H281DRAFT_02160 Fucose permease 0.34 H281DRAFT_02203 SAM-dependent methyltransferase /23S rRNA m(5)C-1962 methyltransferase low > 103
Pseudomonas fluorescens FW300-N2E2 0.13 Pf6N2E2_32 Membrane protein mosC 0.20 Pf6N2E2_4566 LSU m5C1962 methyltransferase RlmI low > 103
Ralstonia solanacearum PSI07 0.13 RPSI07_RS21095 MFS transporter 0.35 RPSI07_RS23695 class I SAM-dependent rRNA methyltransferase low > 81
Enterobacter asburiae PDN3 0.12 EX28DRAFT_2121 Fucose permease 0.33 EX28DRAFT_1976 Predicted SAM-dependent methyltransferases low > 76
Pseudomonas fluorescens FW300-N2E3 0.12 AO353_19740 MFS transporter 0.20 AO353_08330 SAM-dependent methyltransferase low > 101
Rahnella sp. WP5 0.12 EX31_RS01055 MFS transporter 0.32 EX31_RS17990 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI low > 89
Pseudomonas fluorescens FW300-N1B4 0.12 Pf1N1B4_115 Membrane protein mosC 0.20 Pf1N1B4_2307 LSU m5C1962 methyltransferase RlmI low > 87
Escherichia coli ECOR38 0.12 HEPCGN_02020 ybjJ Inner membrane protein YbjJ 0.32 HEPCGN_23335 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI low > 87
Escherichia coli Nissle 1917 0.12 ECOLIN_RS04490 MFS transporter 0.32 ECOLIN_RS05085 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Escherichia coli ECRC101 0.12 MCAODC_25225 ybjJ Inner membrane protein YbjJ 0.32 MCAODC_24575 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI low > 87
Escherichia coli ECRC99 0.12 KEDOAH_21900 ybjJ Inner membrane protein YbjJ 0.32 KEDOAH_22550 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Escherichia coli BW25113 0.12 b0845 ybjJ predicted transporter (NCBI) 0.32 b0967 yccW predicted methyltransferase (RefSeq) low > 76
Escherichia coli ECRC98 0.12 JDDGAC_09645 ybjJ Inner membrane protein YbjJ 0.32 JDDGAC_08795 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI low > 86
Dinoroseobacter shibae DFL-12 0.12 Dshi_2626 major facilitator superfamily MFS_1 (RefSeq) 0.17 Dshi_1771 hypothetical protein (RefSeq) 0.47 26
Escherichia coli ECRC100 0.12 OKFHMN_06010 ybjJ Inner membrane protein YbjJ 0.32 OKFHMN_05185 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI low > 80
Escherichia coli ECRC102 0.12 NIAGMN_04055 ybjJ Inner membrane protein YbjJ 0.32 NIAGMN_02905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Escherichia coli BL21 0.12 ECD_00812 putative drug efflux MFS transporter, inner membrane protein 0.32 ECD_00971 23S rRNA m(5)C1962 methyltransferase, SAM-dependent low > 61
Cupriavidus basilensis FW507-4G11 0.11 RR42_RS19595 amino acid ABC transporter permease 0.32 RR42_RS01670 23S rRNA methyltransferase low > 128
Phaeobacter inhibens DSM 17395 0.11 PGA1_c16750 putative MFS-type transporter 0.16 PGA1_c19990 ribosomal RNA large subunit methyltransferase I low > 62
Dyella japonica UNC79MFTsu3.2 0.11 ABZR86_RS08160 MFS transporter 0.23 ABZR86_RS16890 class I SAM-dependent rRNA methyltransferase low > 74
Rhodospirillum rubrum S1H 0.11 Rru_A1180 Major facilitator superfamily MFS_1 (NCBI) 0.20 Rru_A3333 hypothetical protein (NCBI) low > 58
Ralstonia solanacearum GMI1000 0.10 RS_RS02930 MFS transporter 0.35 RS_RS00255 class I SAM-dependent rRNA methyltransferase low > 80
Escherichia coli ECOR27 0.10 NOLOHH_22380 ybjJ Inner membrane protein YbjJ 0.32 NOLOHH_21740 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI low > 75
Escherichia coli ECRC62 0.10 BNILDI_20640 ybjJ Inner membrane protein YbjJ 0.32 BNILDI_19905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI low > 75
Escherichia fergusonii Becca 0.10 EFB2_03261 Inner membrane protein YbjJ 0.32 EFB2_03104 Ribosomal RNA large subunit methyltransferase I low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.10 OHPLBJKB_02865 Inner membrane protein YbjJ 0.32 OHPLBJKB_02699 Ribosomal RNA large subunit methyltransferase I low > 73
Klebsiella michiganensis M5al 0.10 BWI76_RS09170 MFS transporter 0.34 BWI76_RS10045 23S rRNA (cytosine(1962)-C(5))-methyltransferase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.10 GFF749 Putative transport protein/putative regulator 0.32 GFF3258 LSU m5C1962 methyltransferase RlmI low > 78
Variovorax sp. SCN45 0.07 GFF3851 Uncharacterized MFS-type transporter 0.28 GFF4489 23S rRNA (cytosine(1962)-C(5))-methyltransferase (EC 2.1.1.191) low > 127
Variovorax sp. OAS795 0.07 ABID97_RS08270 MFS transporter 0.27 ABID97_RS06155 class I SAM-dependent methyltransferase low > 91

Not shown: 9 genomes with orthologs for BT0976 only; 22 genomes with orthologs for BT4331 only