Conservation of cofitness between BT3394 and BT3718 in Bacteroides thetaiotaomicron VPI-5482

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT3394 putative arginine decarboxylase (NCBI ptt file) 1.0 BT3718 gamma-glutamyl phosphate reductase (NCBI ptt file) 0.82 11
Bacteroides ovatus ATCC 8483 0.99 BACOVA_01911 arginine 2-monooxygenase 0.90 BACOVA_03534 glutamate-5-semialdehyde dehydrogenase 0.60 21
Bacteroides stercoris CC31F 0.93 HMPREF1181_RS02535 biosynthetic arginine decarboxylase 0.73 HMPREF1181_RS03320 glutamate-5-semialdehyde dehydrogenase 0.78 6
Phocaeicola dorei CL03T12C01 0.92 ABI39_RS04690 biosynthetic arginine decarboxylase 0.62 ABI39_RS02875 glutamate-5-semialdehyde dehydrogenase 0.71 10
Phocaeicola vulgatus CL09T03C04 0.92 HMPREF1058_RS12110 biosynthetic arginine decarboxylase 0.61 HMPREF1058_RS08645 glutamate-5-semialdehyde dehydrogenase 0.57 20
Parabacteroides merdae CL09T00C40 0.91 HMPREF1078_RS15005 biosynthetic arginine decarboxylase 0.68 HMPREF1078_RS10655 glutamate-5-semialdehyde dehydrogenase low > 61
Synechococcus elongatus PCC 7942 0.47 Synpcc7942_1037 speA arginine decarboxylase 0.29 Synpcc7942_2265 proA glutamate-5-semialdehyde dehydrogenase — —
Alteromonas macleodii MIT1002 0.45 MIT1002_03905 Biosynthetic arginine decarboxylase 0.38 MIT1002_01885 Gamma-glutamyl phosphate reductase low > 70
Pectobacterium carotovorum WPP14 0.43 HER17_RS02665 biosynthetic arginine decarboxylase 0.35 HER17_RS04705 glutamate-5-semialdehyde dehydrogenase low > 75
Dickeya dianthicola 67-19 0.42 HGI48_RS18460 biosynthetic arginine decarboxylase 0.36 HGI48_RS16600 glutamate-5-semialdehyde dehydrogenase low > 71
Dickeya dianthicola ME23 0.42 DZA65_RS19595 biosynthetic arginine decarboxylase 0.36 DZA65_RS17690 glutamate-5-semialdehyde dehydrogenase low > 75
Escherichia coli BL21 0.42 ECD_02768 biosynthetic arginine decarboxylase, PLP-binding 0.38 ECD_00240 gamma-glutamylphosphate reductase low > 60
Escherichia coli BW25113 0.42 b2938 speA arginine decarboxylase (NCBI) 0.37 b0243 proA gamma-glutamyl phosphate reductase (NCBI) low > 76
Kangiella aquimarina DSM 16071 0.42 B158DRAFT_1811 arginine decarboxylase (EC 4.1.1.19) 0.34 B158DRAFT_1470 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) low > 40
Escherichia coli HS(pFamp)R (ATCC 700891) 0.42 OHPLBJKB_00778 Biosynthetic arginine decarboxylase 0.37 OHPLBJKB_03397 Gamma-glutamyl phosphate reductase low > 73
Escherichia coli Nissle 1917 0.42 ECOLIN_RS16350 biosynthetic arginine decarboxylase 0.37 ECOLIN_RS01830 glutamate-5-semialdehyde dehydrogenase low > 52
Enterobacter asburiae PDN3 0.42 EX28DRAFT_2978 arginine decarboxylase (EC 4.1.1.19) 0.38 EX28DRAFT_2650 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) low > 76
Escherichia coli ECRC99 0.42 KEDOAH_08835 speA biosynthetic arginine decarboxylase 0.37 KEDOAH_18485 proA glutamate-5-semialdehyde dehydrogenase — —
Escherichia coli ECRC101 0.42 MCAODC_09825 speA biosynthetic arginine decarboxylase 0.37 MCAODC_00190 proA glutamate-5-semialdehyde dehydrogenase — —
Escherichia coli ECRC62 0.42 BNILDI_09755 speA biosynthetic arginine decarboxylase 0.37 BNILDI_00240 proA glutamate-5-semialdehyde dehydrogenase — —
Dickeya dadantii 3937 0.42 DDA3937_RS18535 biosynthetic arginine decarboxylase 0.37 DDA3937_RS16530 glutamate-5-semialdehyde dehydrogenase low > 74
Escherichia coli ECRC101 0.42 OKFHMN_19305 speA biosynthetic arginine decarboxylase 0.37 OKFHMN_09670 proA glutamate-5-semialdehyde dehydrogenase — —
Klebsiella michiganensis M5al 0.42 BWI76_RS24030 arginine decarboxylase 0.38 BWI76_RS05835 gamma-glutamyl-phosphate reductase low > 92
Escherichia coli ECRC102 0.42 NIAGMN_17070 speA biosynthetic arginine decarboxylase 0.37 NIAGMN_07530 proA glutamate-5-semialdehyde dehydrogenase — —
Escherichia coli ECRC98 0.42 JDDGAC_22935 speA biosynthetic arginine decarboxylase 0.37 JDDGAC_13295 proA glutamate-5-semialdehyde dehydrogenase — —
Shewanella sp. ANA-3 0.42 Shewana3_1624 arginine decarboxylase (RefSeq) 0.34 Shewana3_0955 proA gamma-glutamyl phosphate reductase (RefSeq) low > 73
Escherichia coli ECOR38 0.42 HEPCGN_18610 speA biosynthetic arginine decarboxylase 0.37 HEPCGN_07775 proA glutamate-5-semialdehyde dehydrogenase low > 85
Escherichia coli ECOR27 0.42 NOLOHH_11175 speA biosynthetic arginine decarboxylase 0.37 NOLOHH_02045 proA glutamate-5-semialdehyde dehydrogenase low > 57
Escherichia fergusonii Becca 0.42 EFB2_00962 Biosynthetic arginine decarboxylase 0.36 EFB2_03777 Gamma-glutamyl phosphate reductase low > 86
Serratia liquefaciens MT49 0.42 IAI46_21140 biosynthetic arginine decarboxylase 0.37 IAI46_04435 glutamate-5-semialdehyde dehydrogenase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF3040 Biosynthetic arginine decarboxylase (EC 4.1.1.19) 0.39 GFF4115 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) low > 78
Pantoea sp. MT58 0.42 IAI47_03660 biosynthetic arginine decarboxylase 0.37 IAI47_15115 glutamate-5-semialdehyde dehydrogenase low > 76
Enterobacter sp. TBS_079 0.42 MPMX20_03799 Biosynthetic arginine decarboxylase 0.39 MPMX20_00928 Gamma-glutamyl phosphate reductase low > 85
Shewanella oneidensis MR-1 0.42 SO1870 speA biosynthetic arginine decarboxylase (NCBI ptt file) 0.34 SO1122 proA gamma-glutamyl phosphate reductase (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.42 Shew_1619 arginine decarboxylase (RefSeq) 0.35 Shew_2847 proA gamma-glutamyl phosphate reductase (RefSeq) — —
Rahnella sp. WP5 0.42 EX31_RS21355 biosynthetic arginine decarboxylase 0.37 EX31_RS20975 glutamate-5-semialdehyde dehydrogenase low > 89
Desulfovibrio vulgaris Hildenborough JW710 0.41 DVU0417 speA arginine decarboxylase (TIGR) 0.32 DVU1953 proA gamma-glutamyl phosphate reductase (TIGR) low > 55
Erwinia tracheiphila SCR3 0.41 LU632_RS05510 speA biosynthetic arginine decarboxylase 0.36 LU632_RS01190 proA glutamate-5-semialdehyde dehydrogenase low > 74
Desulfovibrio vulgaris Miyazaki F 0.41 DvMF_1536 arginine decarboxylase (RefSeq) 0.32 DvMF_0612 proA gamma-glutamyl phosphate reductase (RefSeq) low > 51
Shewanella amazonensis SB2B 0.41 Sama_1963 arginine decarboxylase (RefSeq) 0.34 Sama_2515 proA gamma-glutamyl phosphate reductase (RefSeq) low > 62
Marinobacter adhaerens HP15 0.41 HP15_272 biosynthetic arginine decarboxylase 0.33 HP15_601 gamma-glutamyl phosphate reductase — —
Xanthomonas campestris pv. campestris strain 8004 0.41 Xcc-8004.4909.1 Biosynthetic arginine decarboxylase (EC 4.1.1.19) 0.31 Xcc-8004.2327.1 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) — —
Vibrio cholerae E7946 ATCC 55056 0.40 CSW01_18235 arginine decarboxylase 0.37 CSW01_11570 glutamate-5-semialdehyde dehydrogenase low > 62
Rhodanobacter denitrificans MT42 0.40 LRK55_RS08900 arginine decarboxylase 0.33 LRK55_RS02125 glutamate-5-semialdehyde dehydrogenase low > 63
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_15625 speA biosynthetic arginine decarboxylase 0.30 OKGIIK_09415 proA glutamate-5-semialdehyde dehydrogenase — —
Lysobacter sp. OAE881 0.39 ABIE51_RS00125 arginine decarboxylase 0.30 ABIE51_RS13365 glutamate-5-semialdehyde dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_43 Biosynthetic arginine decarboxylase (EC 4.1.1.19) 0.33 PfGW456L13_1356 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) low > 87
Pseudomonas stutzeri RCH2 0.39 Psest_3366 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) 0.32 Psest_0508 gamma-glutamyl phosphate reductase low > 67
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_1296 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) 0.33 Pf1N1B4_2688 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) low > 87
Pseudomonas sp. S08-1 0.39 OH686_07545 arginine decarboxylase 0.32 OH686_09340 Gamma-glutamyl phosphate reductase low > 80
Pseudomonas simiae WCS417 0.39 PS417_03005 arginine decarboxylase 0.32 PS417_24745 gamma-glutamyl phosphate reductase low > 88
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS03080 arginine decarboxylase 0.32 PFLU_RS26675 glutamate-5-semialdehyde dehydrogenase — —
Pseudomonas fluorescens SBW25 0.39 PFLU_RS03080 arginine decarboxylase 0.32 PFLU_RS26675 glutamate-5-semialdehyde dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_3504 Biosynthetic arginine decarboxylase (EC 4.1.1.19) 0.33 Pf6N2E2_4993 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) low > 103
Pseudomonas sp. RS175 0.39 PFR28_05228 Biosynthetic arginine decarboxylase 0.33 PFR28_03872 Gamma-glutamyl phosphate reductase — —
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS15580 biosynthetic arginine decarboxylase 0.34 ABZR86_RS08680 glutamate-5-semialdehyde dehydrogenase — —
Pseudomonas putida KT2440 0.38 PP_0567 Biosynthetic arginine decarboxylase 0.33 PP_4811 Gamma-glutamyl phosphate reductase low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_4381 arginine decarboxylase 0.34 Psyr_4369 glutamate-5-semialdehyde dehydrogenase low > 86
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_08155 arginine decarboxylase 0.33 AO356_15290 gamma-glutamyl phosphate reductase low > 104
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_4381 arginine decarboxylase 0.34 Psyr_4369 glutamate-5-semialdehyde dehydrogenase low > 86
Rhodanobacter denitrificans FW104-10B01 0.38 LRK54_RS09140 arginine decarboxylase 0.33 LRK54_RS02370 glutamate-5-semialdehyde dehydrogenase — —
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_13720 arginine decarboxylase 0.33 AO353_06495 gamma-glutamyl phosphate reductase low > 101

Not shown: 0 genomes with orthologs for BT3394 only; 39 genomes with orthologs for BT3718 only