Conservation of cofitness between BT3394 and BT2078 in Bacteroides thetaiotaomicron VPI-5482

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT3394 putative arginine decarboxylase (NCBI ptt file) 1.0 BT2078 dihydroxy-acid dehydratase (NCBI ptt file) 0.83 4
Bacteroides ovatus ATCC 8483 0.99 BACOVA_01911 arginine 2-monooxygenase 0.94 BACOVA_03302 dihydroxy-acid dehydratase 0.60 23
Bacteroides stercoris CC31F 0.93 HMPREF1181_RS02535 biosynthetic arginine decarboxylase 0.91 HMPREF1181_RS08335 dihydroxy-acid dehydratase low > 56
Phocaeicola dorei CL03T12C01 0.92 ABI39_RS04690 biosynthetic arginine decarboxylase 0.88 ABI39_RS12715 dihydroxy-acid dehydratase 0.70 15
Phocaeicola vulgatus CL09T03C04 0.92 HMPREF1058_RS12110 biosynthetic arginine decarboxylase 0.89 HMPREF1058_RS16815 dihydroxy-acid dehydratase 0.57 21
Parabacteroides merdae CL09T00C40 0.91 HMPREF1078_RS15005 biosynthetic arginine decarboxylase 0.83 HMPREF1078_RS16695 dihydroxy-acid dehydratase low > 61
Synechococcus elongatus PCC 7942 0.47 Synpcc7942_1037 speA arginine decarboxylase 0.65 Synpcc7942_0626 ilvD dihydroxy-acid dehydratase — —
Alteromonas macleodii MIT1002 0.45 MIT1002_03905 Biosynthetic arginine decarboxylase 0.63 MIT1002_04041 Dihydroxy-acid dehydratase low > 70
Pectobacterium carotovorum WPP14 0.43 HER17_RS02665 biosynthetic arginine decarboxylase 0.62 HER17_RS01075 dihydroxy-acid dehydratase low > 75
Escherichia coli BL21 0.42 ECD_02768 biosynthetic arginine decarboxylase, PLP-binding 0.64 ECD_03649 dihydroxyacid dehydratase low > 60
Dickeya dianthicola 67-19 0.42 HGI48_RS18460 biosynthetic arginine decarboxylase 0.63 HGI48_RS20295 dihydroxy-acid dehydratase low > 71
Escherichia coli BW25113 0.42 b2938 speA arginine decarboxylase (NCBI) 0.64 b3771 ilvD dihydroxy-acid dehydratase (NCBI) low > 76
Dickeya dianthicola ME23 0.42 DZA65_RS19595 biosynthetic arginine decarboxylase 0.62 DZA65_RS21335 dihydroxy-acid dehydratase low > 75
Enterobacter asburiae PDN3 0.42 EX28DRAFT_2978 arginine decarboxylase (EC 4.1.1.19) 0.64 EX28DRAFT_4443 dihydroxy-acid dehydratase low > 76
Escherichia coli Nissle 1917 0.42 ECOLIN_RS16350 biosynthetic arginine decarboxylase 0.65 ECOLIN_RS21665 dihydroxy-acid dehydratase low > 52
Escherichia coli ECRC98 0.42 JDDGAC_22935 speA biosynthetic arginine decarboxylase 0.64 JDDGAC_18260 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECOR27 0.42 NOLOHH_11175 speA biosynthetic arginine decarboxylase 0.64 NOLOHH_06775 ilvD dihydroxy-acid dehydratase low > 57
Escherichia fergusonii Becca 0.42 EFB2_00962 Biosynthetic arginine decarboxylase 0.65 EFB2_04865 Dihydroxy-acid dehydratase low > 86
Klebsiella michiganensis M5al 0.42 BWI76_RS24030 arginine decarboxylase 0.64 BWI76_RS00975 dihydroxy-acid dehydratase low > 92
Escherichia coli ECRC62 0.42 BNILDI_09755 speA biosynthetic arginine decarboxylase 0.64 BNILDI_04750 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC101 0.42 OKFHMN_19305 speA biosynthetic arginine decarboxylase 0.64 OKFHMN_14640 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC99 0.42 KEDOAH_08835 speA biosynthetic arginine decarboxylase 0.64 KEDOAH_13510 ilvD dihydroxy-acid dehydratase — —
Shewanella sp. ANA-3 0.42 Shewana3_1624 arginine decarboxylase (RefSeq) 0.61 Shewana3_0358 dihydroxy-acid dehydratase (RefSeq) low > 73
Escherichia coli ECRC101 0.42 MCAODC_09825 speA biosynthetic arginine decarboxylase 0.64 MCAODC_05145 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC102 0.42 NIAGMN_17070 speA biosynthetic arginine decarboxylase 0.64 NIAGMN_12395 ilvD dihydroxy-acid dehydratase — —
Dickeya dadantii 3937 0.42 DDA3937_RS18535 biosynthetic arginine decarboxylase 0.62 DDA3937_RS20155 dihydroxy-acid dehydratase low > 74
Escherichia coli ECOR38 0.42 HEPCGN_18610 speA biosynthetic arginine decarboxylase 0.64 HEPCGN_13350 ilvD dihydroxy-acid dehydratase low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.42 OHPLBJKB_00778 Biosynthetic arginine decarboxylase 0.64 OHPLBJKB_04282 Dihydroxy-acid dehydratase low > 73
Serratia liquefaciens MT49 0.42 IAI46_21140 biosynthetic arginine decarboxylase 0.62 IAI46_24345 dihydroxy-acid dehydratase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF3040 Biosynthetic arginine decarboxylase (EC 4.1.1.19) 0.64 GFF2901 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 78
Enterobacter sp. TBS_079 0.42 MPMX20_03799 Biosynthetic arginine decarboxylase 0.65 MPMX20_04499 Dihydroxy-acid dehydratase low > 85
Pantoea sp. MT58 0.42 IAI47_03660 biosynthetic arginine decarboxylase 0.62 IAI47_01035 dihydroxy-acid dehydratase low > 76
Shewanella loihica PV-4 0.42 Shew_1619 arginine decarboxylase (RefSeq) 0.61 Shew_0292 dihydroxy-acid dehydratase (RefSeq) — —
Rahnella sp. WP5 0.42 EX31_RS21355 biosynthetic arginine decarboxylase 0.60 EX31_RS15005 dihydroxy-acid dehydratase low > 89
Shewanella oneidensis MR-1 0.42 SO1870 speA biosynthetic arginine decarboxylase (NCBI ptt file) 0.61 SO4345 ilvD dihydroxy-acid dehydratase (NCBI ptt file) low > 76
Desulfovibrio vulgaris Hildenborough JW710 0.41 DVU0417 speA arginine decarboxylase (TIGR) 0.40 DVU3373 ilvD dihydroxy-acid dehydratase (TIGR) low > 55
Erwinia tracheiphila SCR3 0.41 LU632_RS05510 speA biosynthetic arginine decarboxylase 0.62 LU632_RS24400 ilvD dihydroxy-acid dehydratase low > 74
Desulfovibrio vulgaris Miyazaki F 0.41 DvMF_1536 arginine decarboxylase (RefSeq) 0.39 DvMF_2034 dihydroxy-acid dehydratase (RefSeq) low > 51
Shewanella amazonensis SB2B 0.41 Sama_1963 arginine decarboxylase (RefSeq) 0.61 Sama_3279 dihydroxy-acid dehydratase (RefSeq) low > 62
Marinobacter adhaerens HP15 0.41 HP15_272 biosynthetic arginine decarboxylase 0.61 HP15_595 dihydroxy-acid dehydratase low > 73
Xanthomonas campestris pv. campestris strain 8004 0.41 Xcc-8004.4909.1 Biosynthetic arginine decarboxylase (EC 4.1.1.19) 0.63 Xcc-8004.451.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Vibrio cholerae E7946 ATCC 55056 0.40 CSW01_18235 arginine decarboxylase 0.62 CSW01_00140 dihydroxy-acid dehydratase low > 62
Rhodanobacter denitrificans MT42 0.40 LRK55_RS08900 arginine decarboxylase 0.25 LRK55_RS09960 dihydroxy-acid dehydratase low > 63
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_15625 speA biosynthetic arginine decarboxylase 0.26 OKGIIK_13600 ilvD dihydroxy-acid dehydratase — —
Lysobacter sp. OAE881 0.39 ABIE51_RS00125 arginine decarboxylase 0.27 ABIE51_RS17540 dihydroxy-acid dehydratase — —
Pseudomonas stutzeri RCH2 0.39 Psest_3366 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) 0.64 Psest_0234 dihydroxy-acid dehydratase — —
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_43 Biosynthetic arginine decarboxylase (EC 4.1.1.19) 0.63 PfGW456L13_973 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 87
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_1296 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) 0.63 Pf1N1B4_2303 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 87
Pseudomonas sp. S08-1 0.39 OH686_07545 arginine decarboxylase 0.64 OH686_14100 dihydroxy-acid dehydratase low > 80
Pseudomonas simiae WCS417 0.39 PS417_03005 arginine decarboxylase 0.63 PS417_26890 dihydroxy-acid dehydratase low > 88
Pseudomonas fluorescens SBW25 0.39 PFLU_RS03080 arginine decarboxylase 0.63 PFLU_RS28535 dihydroxy-acid dehydratase low > 109
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS03080 arginine decarboxylase 0.63 PFLU_RS28535 dihydroxy-acid dehydratase low > 109
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_3504 Biosynthetic arginine decarboxylase (EC 4.1.1.19) 0.63 Pf6N2E2_4564 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 103
Pseudomonas sp. RS175 0.39 PFR28_05228 Biosynthetic arginine decarboxylase 0.63 PFR28_04278 Dihydroxy-acid dehydratase low > 88
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS15580 biosynthetic arginine decarboxylase 0.26 ABZR86_RS15945 dihydroxy-acid dehydratase — —
Pseudomonas putida KT2440 0.38 PP_0567 Biosynthetic arginine decarboxylase 0.63 PP_5128 Dihydroxy-acid dehydratase low > 96
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_4381 arginine decarboxylase 0.62 Psyr_0469 dihydroxyacid dehydratase low > 86
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_08155 arginine decarboxylase 0.63 AO356_13250 dihydroxy-acid dehydratase low > 104
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_4381 arginine decarboxylase 0.62 Psyr_0469 dihydroxyacid dehydratase low > 86
Rhodanobacter denitrificans FW104-10B01 0.38 LRK54_RS09140 arginine decarboxylase 0.25 LRK54_RS10320 dihydroxy-acid dehydratase — —
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_13720 arginine decarboxylase 0.63 AO353_08345 dihydroxy-acid dehydratase low > 101

Not shown: 1 genomes with orthologs for BT3394 only; 41 genomes with orthologs for BT2078 only