Conservation of cofitness between b2913 and b3771 in Escherichia coli BW25113

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2913 serA D-3-phosphoglycerate dehydrogenase (NCBI) 1.0 b3771 ilvD dihydroxy-acid dehydratase (NCBI) 0.89 13
Escherichia coli Nissle 1917 1.00 ECOLIN_RS16210 phosphoglycerate dehydrogenase 0.99 ECOLIN_RS21665 dihydroxy-acid dehydratase low > 52
Escherichia coli ECOR27 1.00 NOLOHH_11370 serA phosphoglycerate dehydrogenase 1.00 NOLOHH_06775 ilvD dihydroxy-acid dehydratase low > 57
Escherichia coli ECRC98 1.00 JDDGAC_23100 serA phosphoglycerate dehydrogenase 1.00 JDDGAC_18260 ilvD dihydroxy-acid dehydratase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00803 D-3-phosphoglycerate dehydrogenase 1.00 OHPLBJKB_04282 Dihydroxy-acid dehydratase low > 73
Escherichia coli ECRC101 1.00 OKFHMN_19460 serA phosphoglycerate dehydrogenase 1.00 OKFHMN_14640 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC101 1.00 MCAODC_09980 serA phosphoglycerate dehydrogenase 1.00 MCAODC_05145 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECOR38 1.00 HEPCGN_18760 serA phosphoglycerate dehydrogenase 1.00 HEPCGN_13350 ilvD dihydroxy-acid dehydratase low > 85
Escherichia coli BL21 1.00 ECD_02744 D-3-phosphoglycerate dehydrogenase 1.00 ECD_03649 dihydroxyacid dehydratase 0.56 53
Escherichia coli ECRC99 1.00 KEDOAH_08680 serA phosphoglycerate dehydrogenase 1.00 KEDOAH_13510 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC102 1.00 NIAGMN_17225 serA phosphoglycerate dehydrogenase 1.00 NIAGMN_12395 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC62 1.00 BNILDI_09905 serA phosphoglycerate dehydrogenase 1.00 BNILDI_04750 ilvD dihydroxy-acid dehydratase — —
Escherichia fergusonii Becca 1.00 EFB2_00990 D-3-phosphoglycerate dehydrogenase 0.99 EFB2_04865 Dihydroxy-acid dehydratase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF3013 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.97 GFF2901 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 78
Klebsiella michiganensis M5al 0.93 BWI76_RS23920 D-3-phosphoglycerate dehydrogenase 0.96 BWI76_RS00975 dihydroxy-acid dehydratase 0.84 6
Enterobacter sp. TBS_079 0.93 MPMX20_03771 D-3-phosphoglycerate dehydrogenase 0.97 MPMX20_04499 Dihydroxy-acid dehydratase 0.92 3
Enterobacter asburiae PDN3 0.92 EX28DRAFT_2965 Phosphoglycerate dehydrogenase and related dehydrogenases 0.96 EX28DRAFT_4443 dihydroxy-acid dehydratase — —
Pantoea sp. MT58 0.87 IAI47_03725 phosphoglycerate dehydrogenase 0.89 IAI47_01035 dihydroxy-acid dehydratase 0.91 12
Erwinia tracheiphila SCR3 0.86 LU632_RS05855 serA phosphoglycerate dehydrogenase 0.86 LU632_RS24400 ilvD dihydroxy-acid dehydratase 0.72 37
Pectobacterium carotovorum WPP14 0.85 HER17_RS02725 phosphoglycerate dehydrogenase 0.91 HER17_RS01075 dihydroxy-acid dehydratase 0.88 30
Serratia liquefaciens MT49 0.85 IAI46_20900 phosphoglycerate dehydrogenase 0.90 IAI46_24345 dihydroxy-acid dehydratase 0.64 59
Dickeya dadantii 3937 0.83 DDA3937_RS18480 phosphoglycerate dehydrogenase 0.92 DDA3937_RS20155 dihydroxy-acid dehydratase 0.84 18
Rahnella sp. WP5 0.82 EX31_RS21470 phosphoglycerate dehydrogenase 0.87 EX31_RS15005 dihydroxy-acid dehydratase 0.84 11
Dickeya dianthicola 67-19 0.82 HGI48_RS18400 phosphoglycerate dehydrogenase 0.91 HGI48_RS20295 dihydroxy-acid dehydratase low > 71
Dickeya dianthicola ME23 0.82 DZA65_RS19540 phosphoglycerate dehydrogenase 0.91 DZA65_RS21335 dihydroxy-acid dehydratase 0.65 35
Vibrio cholerae E7946 ATCC 55056 0.74 CSW01_12555 phosphoglycerate dehydrogenase 0.85 CSW01_00140 dihydroxy-acid dehydratase low > 62
Alteromonas macleodii MIT1002 0.71 MIT1002_02993 D-3-phosphoglycerate dehydrogenase 0.79 MIT1002_04041 Dihydroxy-acid dehydratase 0.87 29
Shewanella loihica PV-4 0.70 Shew_3196 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.78 Shew_0292 dihydroxy-acid dehydratase (RefSeq) 0.98 23
Shewanella oneidensis MR-1 0.70 SO0862 serA D-3-phosphoglycerate dehydrogenase (NCBI ptt file) 0.80 SO4345 ilvD dihydroxy-acid dehydratase (NCBI ptt file) 0.90 5
Shewanella sp. ANA-3 0.70 Shewana3_3416 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.80 Shewana3_0358 dihydroxy-acid dehydratase (RefSeq) 0.91 5
Shewanella amazonensis SB2B 0.69 Sama_2949 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.79 Sama_3279 dihydroxy-acid dehydratase (RefSeq) 0.89 11
Pseudomonas syringae pv. syringae B728a 0.67 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.74 Psyr_0469 dihydroxyacid dehydratase 0.91 3
Pseudomonas syringae pv. syringae B728a ΔmexB 0.67 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.74 Psyr_0469 dihydroxyacid dehydratase 0.94 4
Pseudomonas sp. S08-1 0.67 OH686_11280 D-3-phosphoglycerate dehydrogenase 0.75 OH686_14100 dihydroxy-acid dehydratase low > 80
Pseudomonas fluorescens GW456-L13 0.66 PfGW456L13_943 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.75 PfGW456L13_973 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.81 33
Pseudomonas fluorescens FW300-N1B4 0.66 Pf1N1B4_2272 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.75 Pf1N1B4_2303 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.88 2
Pseudomonas sp. RS175 0.66 PFR28_04842 D-3-phosphoglycerate dehydrogenase 0.75 PFR28_04278 Dihydroxy-acid dehydratase 0.70 3
Pseudomonas fluorescens FW300-N2E3 0.66 AO353_08510 3-phosphoglycerate dehydrogenase 0.75 AO353_08345 dihydroxy-acid dehydratase 0.87 4
Pseudomonas stutzeri RCH2 0.66 Psest_3873 Phosphoglycerate dehydrogenase and related dehydrogenases 0.75 Psest_0234 dihydroxy-acid dehydratase — —
Pseudomonas putida KT2440 0.66 PP_5155 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase 0.74 PP_5128 Dihydroxy-acid dehydratase 0.80 4
Pseudomonas fluorescens FW300-N2E2 0.66 Pf6N2E2_3932 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.75 Pf6N2E2_4564 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.88 3
Pseudomonas fluorescens FW300-N2C3 0.65 AO356_10300 3-phosphoglycerate dehydrogenase 0.75 AO356_13250 dihydroxy-acid dehydratase 0.89 7
Acidovorax sp. GW101-3H11 0.65 Ac3H11_4790 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.74 Ac3H11_955 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 79
Pseudomonas fluorescens SBW25 0.65 PFLU_RS28695 phosphoglycerate dehydrogenase 0.75 PFLU_RS28535 dihydroxy-acid dehydratase low > 109
Pseudomonas fluorescens SBW25-INTG 0.65 PFLU_RS28695 phosphoglycerate dehydrogenase 0.75 PFLU_RS28535 dihydroxy-acid dehydratase 0.46 7
Pseudomonas simiae WCS417 0.65 PS417_27040 3-phosphoglycerate dehydrogenase 0.75 PS417_26890 dihydroxy-acid dehydratase 0.87 2
Marinobacter adhaerens HP15 0.65 HP15_2554 D-3-phosphoglycerate dehydrogenase-like protein 0.70 HP15_595 dihydroxy-acid dehydratase — —
Dyella japonica UNC79MFTsu3.2 0.64 ABZR86_RS09635 phosphoglycerate dehydrogenase 0.28 ABZR86_RS15945 dihydroxy-acid dehydratase 0.95 9
Variovorax sp. SCN45 0.63 GFF2538 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.31 GFF471 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Acinetobacter radioresistens SK82 0.63 MPMX26_02773 D-3-phosphoglycerate dehydrogenase 0.29 MPMX26_03019 Dihydroxy-acid dehydratase low > 36
Variovorax sp. OAS795 0.63 ABID97_RS07235 phosphoglycerate dehydrogenase 0.31 ABID97_RS17500 dihydroxy-acid dehydratase — —
Rhodanobacter denitrificans MT42 0.62 LRK55_RS02935 phosphoglycerate dehydrogenase 0.26 LRK55_RS09960 dihydroxy-acid dehydratase low > 63
Rhodanobacter denitrificans FW104-10B01 0.62 LRK54_RS03185 phosphoglycerate dehydrogenase 0.26 LRK54_RS10320 dihydroxy-acid dehydratase 0.75 19
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.2931.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.72 Xcc-8004.451.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.70 54
Rhodanobacter sp. FW510-T8 0.61 OKGIIK_10055 serA phosphoglycerate dehydrogenase 0.27 OKGIIK_13600 ilvD dihydroxy-acid dehydratase low > 52
Hydrogenophaga sp. GW460-11-11-14-LB1 0.61 GFF149 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.64 GFF2073 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 90
Lysobacter sp. OAE881 0.60 ABIE51_RS13245 phosphoglycerate dehydrogenase 0.27 ABIE51_RS17540 dihydroxy-acid dehydratase 0.89 34
Rhodospirillum rubrum S1H 0.58 Rru_A2456 Phosphoglycerate dehydrogenase (NCBI) 0.71 Rru_A1786 Dihydroxy-acid dehydratase (NCBI) — —
Rhizobium sp. OAE497 0.58 ABIE40_RS30040 phosphoglycerate dehydrogenase 0.75 ABIE40_RS08005 dihydroxy-acid dehydratase low > 107
Azospirillum sp. SherDot2 0.55 MPMX19_00753 D-3-phosphoglycerate dehydrogenase 0.74 MPMX19_05356 Dihydroxy-acid dehydratase — —
Azospirillum brasilense Sp245 0.55 AZOBR_RS10940 3-phosphoglycerate dehydrogenase 0.74 AZOBR_RS15015 dihydroxy-acid dehydratase — —
Bosea sp. OAE506 0.55 ABIE41_RS08410 phosphoglycerate dehydrogenase 0.29 ABIE41_RS15690 dihydroxy-acid dehydratase — —
Castellaniella sp019104865 MT123 0.53 ABCV34_RS15150 phosphoglycerate dehydrogenase 0.72 ABCV34_RS14810 dihydroxy-acid dehydratase — —
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS27010 D-3-phosphoglycerate dehydrogenase 0.29 RR42_RS16210 dihydroxy-acid dehydratase — —
Bifidobacterium breve UCC2003 0.45 BBR_RS16970 phosphoglycerate dehydrogenase 0.56 BBR_RS17635 dihydroxy-acid dehydratase low > 34

Not shown: 1 genomes with orthologs for b2913 only; 37 genomes with orthologs for b3771 only