Conservation of cofitness between b2913 and b3941 in Escherichia coli BW25113

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2913 serA D-3-phosphoglycerate dehydrogenase (NCBI) 1.0 b3941 metF 5,10-methylenetetrahydrofolate reductase (NCBI) 0.90 11
Escherichia coli ECRC102 1.00 NIAGMN_17225 serA phosphoglycerate dehydrogenase 1.00 NIAGMN_11420 metF methylenetetrahydrofolate reductase
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00803 D-3-phosphoglycerate dehydrogenase 1.00 OHPLBJKB_04109 5,10-methylenetetrahydrofolate reductase low > 73
Escherichia coli ECOR38 1.00 HEPCGN_18760 serA phosphoglycerate dehydrogenase 1.00 HEPCGN_12310 metF methylenetetrahydrofolate reductase low > 85
Escherichia coli ECRC98 1.00 JDDGAC_23100 serA phosphoglycerate dehydrogenase 1.00 JDDGAC_17290 metF methylenetetrahydrofolate reductase
Escherichia coli ECRC101 1.00 MCAODC_09980 serA phosphoglycerate dehydrogenase 1.00 MCAODC_04165 metF methylenetetrahydrofolate reductase
Escherichia coli ECRC99 1.00 KEDOAH_08680 serA phosphoglycerate dehydrogenase 1.00 KEDOAH_14495 metF methylenetetrahydrofolate reductase
Escherichia coli ECOR27 1.00 NOLOHH_11370 serA phosphoglycerate dehydrogenase 1.00 NOLOHH_05810 metF methylenetetrahydrofolate reductase low > 57
Escherichia coli BL21 1.00 ECD_02744 D-3-phosphoglycerate dehydrogenase 1.00 ECD_03827 5,10-methylenetetrahydrofolate reductase 0.69 25
Escherichia coli Nissle 1917 1.00 ECOLIN_RS16210 phosphoglycerate dehydrogenase 0.99 ECOLIN_RS22760 methylenetetrahydrofolate reductase low > 52
Escherichia coli ECRC101 1.00 OKFHMN_19460 serA phosphoglycerate dehydrogenase 1.00 OKFHMN_13665 metF methylenetetrahydrofolate reductase
Escherichia coli ECRC62 1.00 BNILDI_09905 serA phosphoglycerate dehydrogenase 1.00 BNILDI_05725 metF methylenetetrahydrofolate reductase
Escherichia fergusonii Becca 1.00 EFB2_00990 D-3-phosphoglycerate dehydrogenase 0.99 EFB2_04672 5,10-methylenetetrahydrofolate reductase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF3013 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.97 GFF2329 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) low > 78
Klebsiella michiganensis M5al 0.93 BWI76_RS23920 D-3-phosphoglycerate dehydrogenase 0.95 BWI76_RS00805 5,10-methylenetetrahydrofolate reductase 0.79 36
Enterobacter sp. TBS_079 0.93 MPMX20_03771 D-3-phosphoglycerate dehydrogenase 0.95 MPMX20_04529 5,10-methylenetetrahydrofolate reductase 0.69 67
Enterobacter asburiae PDN3 0.92 EX28DRAFT_2965 Phosphoglycerate dehydrogenase and related dehydrogenases 0.94 EX28DRAFT_4413 5,10-methylenetetrahydrofolate reductase, prokaryotic form
Pantoea sp. MT58 0.87 IAI47_03725 phosphoglycerate dehydrogenase 0.92 IAI47_00890 methylenetetrahydrofolate reductase low > 76
Erwinia tracheiphila SCR3 0.86 LU632_RS05855 serA phosphoglycerate dehydrogenase 0.86 LU632_RS19630 metF methylenetetrahydrofolate reductase low > 74
Pectobacterium carotovorum WPP14 0.85 HER17_RS02725 phosphoglycerate dehydrogenase 0.88 HER17_RS00950 methylenetetrahydrofolate reductase low > 75
Serratia liquefaciens MT49 0.85 IAI46_20900 phosphoglycerate dehydrogenase 0.91 IAI46_24530 methylenetetrahydrofolate reductase 0.63 61
Dickeya dadantii 3937 0.83 DDA3937_RS18480 phosphoglycerate dehydrogenase 0.90 DDA3937_RS00960 methylenetetrahydrofolate reductase low > 74
Rahnella sp. WP5 0.82 EX31_RS21470 phosphoglycerate dehydrogenase 0.89 EX31_RS14205 methylenetetrahydrofolate reductase 0.75 74
Dickeya dianthicola 67-19 0.82 HGI48_RS18400 phosphoglycerate dehydrogenase 0.88 HGI48_RS20415 methylenetetrahydrofolate reductase low > 71
Dickeya dianthicola ME23 0.82 DZA65_RS19540 phosphoglycerate dehydrogenase 0.88 DZA65_RS21460 methylenetetrahydrofolate reductase 0.56 56
Vibrio cholerae E7946 ATCC 55056 0.74 CSW01_12555 phosphoglycerate dehydrogenase 0.79 CSW01_13560 methylenetetrahydrofolate reductase low > 62
Alteromonas macleodii MIT1002 0.71 MIT1002_02993 D-3-phosphoglycerate dehydrogenase 0.70 MIT1002_03670 5,10-methylenetetrahydrofolate reductase low > 70
Shewanella loihica PV-4 0.70 Shew_3196 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.76 Shew_0522 metF 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.98 3
Shewanella oneidensis MR-1 0.70 SO0862 serA D-3-phosphoglycerate dehydrogenase (NCBI ptt file) 0.75 SO4054 metF 5,10-methylenetetrahydrofolate reductase (NCBI ptt file) 0.87 32
Shewanella sp. ANA-3 0.70 Shewana3_3416 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.75 Shewana3_3612 metF 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.87 26
Shewanella amazonensis SB2B 0.69 Sama_2949 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.75 Sama_3169 metF 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.88 18
Pseudomonas syringae pv. syringae B728a 0.67 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.35 Psyr_0459 5,10-methylenetetrahydrofolate reductase 0.60 65
Pseudomonas syringae pv. syringae B728a ΔmexB 0.67 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.35 Psyr_0459 5,10-methylenetetrahydrofolate reductase low > 86
Pseudomonas sp. S08-1 0.67 OH686_11280 D-3-phosphoglycerate dehydrogenase 0.36 OH686_10820 methylenetetrahydrofolate reductase [NAD(P)H] low > 80
Pseudomonas fluorescens GW456-L13 0.66 PfGW456L13_943 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.35 PfGW456L13_1050 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.84 18
Pseudomonas fluorescens FW300-N1B4 0.66 Pf1N1B4_2272 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.35 Pf1N1B4_2384 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.79 28
Pseudomonas sp. RS175 0.66 PFR28_04842 D-3-phosphoglycerate dehydrogenase 0.36 PFR28_04202 5,10-methylenetetrahydrofolate reductase 0.66 6
Pseudomonas fluorescens FW300-N2E3 0.66 AO353_08510 3-phosphoglycerate dehydrogenase 0.35 AO353_08015 5,10-methylenetetrahydrofolate reductase 0.80 26
Pseudomonas stutzeri RCH2 0.66 Psest_3873 Phosphoglycerate dehydrogenase and related dehydrogenases 0.35 Psest_0313 5,10-methylenetetrahydrofolate reductase, prokaryotic form
Pseudomonas putida KT2440 0.66 PP_5155 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase 0.36 PP_4977 5,10-methylenetetrahydrofolate reductase 0.42 58
Pseudomonas fluorescens FW300-N2E2 0.66 Pf6N2E2_3932 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.36 Pf6N2E2_4638 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.58 45
Pseudomonas fluorescens FW300-N2C3 0.65 AO356_10300 3-phosphoglycerate dehydrogenase 0.35 AO356_13605 5,10-methylenetetrahydrofolate reductase 0.87 22
Acidovorax sp. GW101-3H11 0.65 Ac3H11_4790 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.34 Ac3H11_3045 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) low > 79
Pseudomonas fluorescens SBW25 0.65 PFLU_RS28695 phosphoglycerate dehydrogenase 0.36 PFLU_RS28165 methylenetetrahydrofolate reductase [NAD(P)H] low > 109
Pseudomonas fluorescens SBW25-INTG 0.65 PFLU_RS28695 phosphoglycerate dehydrogenase 0.36 PFLU_RS28165 methylenetetrahydrofolate reductase [NAD(P)H] 0.44 11
Pseudomonas simiae WCS417 0.65 PS417_27040 3-phosphoglycerate dehydrogenase 0.36 PS417_26510 5,10-methylenetetrahydrofolate reductase 0.47 64
Marinobacter adhaerens HP15 0.65 HP15_2554 D-3-phosphoglycerate dehydrogenase-like protein 0.37 HP15_2917 5,10-methylenetetrahydrofolate reductase-like protein
Dyella japonica UNC79MFTsu3.2 0.64 ABZR86_RS09635 phosphoglycerate dehydrogenase 0.35 ABZR86_RS11570 methylenetetrahydrofolate reductase [NAD(P)H] 0.95 10
Variovorax sp. SCN45 0.63 GFF2538 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.32 GFF2055 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.49 86
Kangiella aquimarina DSM 16071 0.63 B158DRAFT_0518 Phosphoglycerate dehydrogenase and related dehydrogenases 0.59 B158DRAFT_2461 5,10-methylenetetrahydrofolate reductase (NAD(P)) (EC 1.5.1.20) low > 40
Acinetobacter radioresistens SK82 0.63 MPMX26_02773 D-3-phosphoglycerate dehydrogenase 0.31 MPMX26_01002 5,10-methylenetetrahydrofolate reductase low > 36
Variovorax sp. OAS795 0.63 ABID97_RS07235 phosphoglycerate dehydrogenase 0.33 ABID97_RS25015 methylenetetrahydrofolate reductase [NAD(P)H] low > 91
Rhodanobacter denitrificans MT42 0.62 LRK55_RS02935 phosphoglycerate dehydrogenase 0.35 LRK55_RS11765 methylenetetrahydrofolate reductase [NAD(P)H] low > 63
Rhodanobacter denitrificans FW104-10B01 0.62 LRK54_RS03185 phosphoglycerate dehydrogenase 0.35 LRK54_RS12030 methylenetetrahydrofolate reductase [NAD(P)H] 0.63 41
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.2931.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.36 Xcc-8004.4336.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) low > 74
Rhodanobacter sp. FW510-T8 0.61 OKGIIK_10055 serA phosphoglycerate dehydrogenase 0.35 OKGIIK_11830 metF methylenetetrahydrofolate reductase [NAD(P)H] low > 52
Hydrogenophaga sp. GW460-11-11-14-LB1 0.61 GFF149 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.34 GFF1692 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
Lysobacter sp. OAE881 0.60 ABIE51_RS13245 phosphoglycerate dehydrogenase 0.34 ABIE51_RS16490 methylenetetrahydrofolate reductase [NAD(P)H] 0.89 30
Rhodospirillum rubrum S1H 0.58 Rru_A2456 Phosphoglycerate dehydrogenase (NCBI) 0.51 Rru_A1530 5,10-methylenetetrahydrofolate reductase (NCBI)
Rhizobium sp. OAE497 0.58 ABIE40_RS30040 phosphoglycerate dehydrogenase 0.41 ABIE40_RS11950 methylenetetrahydrofolate reductase [NAD(P)H] low > 107
Azospirillum sp. SherDot2 0.55 MPMX19_00753 D-3-phosphoglycerate dehydrogenase 0.54 MPMX19_00635 5,10-methylenetetrahydrofolate reductase
Bosea sp. OAE506 0.55 ABIE41_RS08410 phosphoglycerate dehydrogenase 0.50 ABIE41_RS12475 methylenetetrahydrofolate reductase [NAD(P)H] low > 77
Azospirillum brasilense Sp245 0.55 AZOBR_RS10940 3-phosphoglycerate dehydrogenase 0.54 AZOBR_RS24245 5 10-methylenetetrahydrofolate reductase
Castellaniella sp019104865 MT123 0.53 ABCV34_RS15150 phosphoglycerate dehydrogenase 0.34 ABCV34_RS13550 methylenetetrahydrofolate reductase [NAD(P)H]
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS27010 D-3-phosphoglycerate dehydrogenase 0.38 RR42_RS01385 5,10-methylenetetrahydrofolate reductase low > 128
Bifidobacterium breve UCC2003 0.45 BBR_RS16970 phosphoglycerate dehydrogenase 0.24 BBR_RS15410 methylenetetrahydrofolate reductase [NAD(P)H] low > 34

Not shown: 0 genomes with orthologs for b2913 only; 34 genomes with orthologs for b3941 only