Conservation of cofitness between b0219 and b3887 in Escherichia coli BW25113

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b0219 yafV predicted C-N hydrolase family amidase, NAD(P)-binding (NCBI) 1.0 b3887 dtd D-tyrosyl-tRNA deacylase (NCBI) 0.15 20
Escherichia coli BL21 1.00 ECD_00214 putative NAD(P)-binding C-N hydrolase family amidase 1.00 ECD_03772 D-tyr-tRNA(Tyr) deacylase low > 60
Escherichia coli ECOR27 0.99 NOLOHH_02165 yafV 2-oxoglutaramate amidase 1.00 NOLOHH_06135 dtd D-aminoacyl-tRNA deacylase low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.98 OHPLBJKB_03420 Omega-amidase YafV 1.00 OHPLBJKB_04167 D-aminoacyl-tRNA deacylase low > 73
Escherichia fergusonii Becca 0.98 EFB2_03798 Omega-amidase YafV 1.00 EFB2_04731 D-aminoacyl-tRNA deacylase low > 86
Escherichia coli ECRC102 0.98 NIAGMN_07650 yafV 2-oxoglutaramate amidase 1.00 NIAGMN_11755 dtd D-aminoacyl-tRNA deacylase — —
Escherichia coli ECRC98 0.98 JDDGAC_13415 yafV 2-oxoglutaramate amidase 1.00 JDDGAC_17625 dtd D-aminoacyl-tRNA deacylase — —
Escherichia coli ECRC101 0.98 OKFHMN_09790 yafV 2-oxoglutaramate amidase 1.00 OKFHMN_14000 dtd D-aminoacyl-tRNA deacylase — —
Escherichia coli ECRC101 0.98 MCAODC_00310 yafV 2-oxoglutaramate amidase 1.00 MCAODC_04500 dtd D-aminoacyl-tRNA deacylase — —
Escherichia coli ECRC62 0.98 BNILDI_00360 yafV 2-oxoglutaramate amidase 1.00 BNILDI_05395 dtd D-aminoacyl-tRNA deacylase — —
Escherichia coli ECRC99 0.98 KEDOAH_18365 yafV 2-oxoglutaramate amidase 1.00 KEDOAH_14155 dtd D-aminoacyl-tRNA deacylase — —
Escherichia coli Nissle 1917 0.98 ECOLIN_RS01735 2-oxoglutaramate amidase 1.00 ECOLIN_RS22385 D-aminoacyl-tRNA deacylase low > 52
Escherichia coli ECOR38 0.98 HEPCGN_07895 yafV 2-oxoglutaramate amidase 1.00 HEPCGN_12635 dtd D-aminoacyl-tRNA deacylase low > 85
Enterobacter sp. TBS_079 0.87 MPMX20_00909 Omega-amidase YafV 0.96 MPMX20_04582 D-aminoacyl-tRNA deacylase low > 85
Klebsiella michiganensis M5al 0.86 BWI76_RS05465 amidohydrolase 0.95 BWI76_RS00425 D-tyrosyl-tRNA(Tyr) deacylase low > 92
Enterobacter asburiae PDN3 0.86 EX28DRAFT_2669 Predicted amidohydrolase 0.98 EX28DRAFT_4369 D-tyrosyl-tRNA(Tyr) deacylase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.85 GFF4099 Aliphatic amidase AmiE (EC 3.5.1.4) 0.93 GFF2242 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) low > 78
Pantoea sp. MT58 0.74 IAI47_15230 amidohydrolase 0.78 IAI47_00480 D-tyrosyl-tRNA(Tyr) deacylase low > 76
Pectobacterium carotovorum WPP14 0.71 HER17_RS04570 amidohydrolase 0.77 HER17_RS21415 D-aminoacyl-tRNA deacylase low > 75
Dickeya dadantii 3937 0.71 DDA3937_RS16630 amidohydrolase 0.79 DDA3937_RS00150 D-tyrosyl-tRNA(Tyr) deacylase low > 74
Dickeya dianthicola 67-19 0.70 HGI48_RS16700 amidohydrolase 0.76 HGI48_RS21210 D-tyrosyl-tRNA(Tyr) deacylase low > 71
Dickeya dianthicola ME23 0.70 DZA65_RS17790 amidohydrolase 0.77 DZA65_RS22185 D-tyrosyl-tRNA(Tyr) deacylase low > 75
Rahnella sp. WP5 0.69 EX31_RS21070 amidohydrolase 0.77 EX31_RS15850 D-tyrosyl-tRNA(Tyr) deacylase low > 89
Serratia liquefaciens MT49 0.68 IAI46_04295 amidohydrolase 0.77 IAI46_24930 D-tyrosyl-tRNA(Tyr) deacylase low > 86
Pseudomonas fluorescens FW300-N2E3 0.49 AO353_15920 carbon-nitrogen hydrolase 0.55 AO353_12305 D-tyrosyl-tRNA(Tyr) deacylase low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_1254 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 0.51 Psyr_0376 D-tyrosyl-tRNA(Tyr) deacylase low > 86
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_1254 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 0.51 Psyr_0376 D-tyrosyl-tRNA(Tyr) deacylase low > 86
Pseudomonas sp. S08-1 0.47 OH686_17560 Aliphatic amidase AmiE 0.56 OH686_10200 D-tyrosyl-tRNA(Tyr) deacylase low > 80
Pseudomonas simiae WCS417 0.47 PS417_23115 carbon-nitrogen hydrolase 0.49 PS417_01785 D-tyrosyl-tRNA(Tyr) deacylase — —
Pseudomonas putida KT2440 0.47 PP_0859 putative ketoglutaramate omega-amidase 0.56 PP_5027 D-tyrosyl-tRNA(Tyr) deacylase low > 96
Pseudomonas fluorescens FW300-N2E2 0.47 Pf6N2E2_3172 Aliphatic amidase AmiE (EC 3.5.1.4) 0.55 Pf6N2E2_3793 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) low > 103
Pseudomonas fluorescens GW456-L13 0.47 PfGW456L13_4855 Aliphatic amidase AmiE (EC 3.5.1.4) 0.56 PfGW456L13_312 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) low > 87
Pseudomonas fluorescens SBW25 0.46 PFLU_RS24770 amidohydrolase 0.50 PFLU_RS01830 D-tyrosyl-tRNA(Tyr) deacylase low > 109
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS24770 amidohydrolase 0.50 PFLU_RS01830 D-tyrosyl-tRNA(Tyr) deacylase low > 109
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_06560 carbon-nitrogen hydrolase 0.54 AO356_09570 D-tyrosyl-tRNA(Tyr) deacylase low > 104
Pseudomonas sp. RS175 0.46 PFR28_00303 Omega-amidase YafV 0.54 PFR28_04977 D-aminoacyl-tRNA deacylase low > 88
Rhodanobacter sp. FW510-T8 0.46 OKGIIK_06395 nit2 amidohydrolase 0.56 OKGIIK_13860 dtd D-aminoacyl-tRNA deacylase low > 52
Pseudomonas fluorescens FW300-N1B4 0.46 Pf1N1B4_848 Aliphatic amidase AmiE (EC 3.5.1.4) 0.52 Pf1N1B4_1574 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) low > 87
Phocaeicola vulgatus CL09T03C04 0.45 HMPREF1058_RS15460 amidohydrolase 0.45 HMPREF1058_RS11520 D-tyrosyl-tRNA(Tyr) deacylase low > 67
Phocaeicola dorei CL03T12C01 0.45 ABI39_RS11430 amidohydrolase 0.45 ABI39_RS05420 D-tyrosyl-tRNA(Tyr) deacylase low > 72
Dyella japonica UNC79MFTsu3.2 0.45 ABZR86_RS02125 amidohydrolase 0.56 ABZR86_RS13940 D-aminoacyl-tRNA deacylase low > 74
Rhodanobacter denitrificans MT42 0.45 LRK55_RS00600 amidohydrolase 0.55 LRK55_RS07050 D-aminoacyl-tRNA deacylase low > 63
Echinicola vietnamensis KMM 6221, DSM 17526 0.45 Echvi_1887 Predicted amidohydrolase 0.47 Echvi_0098 D-tyrosyl-tRNA(Tyr) deacylase low > 79
Pseudomonas stutzeri RCH2 0.44 Psest_1269 Predicted amidohydrolase 0.59 Psest_3950 D-tyrosyl-tRNA(Tyr) deacylase low > 67
Pontibacter actiniarum KMM 6156, DSM 19842 0.44 CA264_15860 amidohydrolase 0.42 CA264_00225 D-tyrosyl-tRNA(Tyr) deacylase low > 74
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.2349.1 Aliphatic amidase AmiE (EC 3.5.1.4) 0.57 Xcc-8004.4731.1 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) low > 74
Bacteroides thetaiotaomicron VPI-5482 0.42 BT0259 putative amidohydrolase (NCBI ptt file) 0.45 BT3265 putative D-tyrosyl-tRNA deacylase (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.42 BACOVA_00412 hydrolase, carbon-nitrogen family 0.44 BACOVA_01364 D-tyrosyl-tRNA(Tyr) deacylase low > 94
Parabacteroides merdae CL09T00C40 0.42 HMPREF1078_RS14090 amidohydrolase 0.47 HMPREF1078_RS06315 D-aminoacyl-tRNA deacylase low > 61
Bacteroides stercoris CC31F 0.42 HMPREF1181_RS04595 amidohydrolase 0.40 HMPREF1181_RS02090 D-tyrosyl-tRNA(Tyr) deacylase low > 56
Lysobacter sp. OAE881 0.42 ABIE51_RS08740 amidohydrolase 0.56 ABIE51_RS02305 D-aminoacyl-tRNA deacylase low > 62
Mucilaginibacter yixingensis YX-36 DSM 26809 0.41 ABZR88_RS03405 amidohydrolase 0.45 ABZR88_RS20265 D-aminoacyl-tRNA deacylase low > 71
Pedobacter sp. GW460-11-11-14-LB5 0.39 CA265_RS08135 amidohydrolase 0.43 CA265_RS18285 D-tyrosyl-tRNA(Tyr) deacylase low > 88
Kangiella aquimarina DSM 16071 0.17 B158DRAFT_2071 Predicted amidohydrolase 0.59 B158DRAFT_0727 D-tyrosyl-tRNA(Tyr) deacylase low > 40
Hydrogenophaga sp. GW460-11-11-14-LB1 0.17 GFF2535 FIG003879: Predicted amidohydrolase 0.53 GFF1670 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) — —
Paraburkholderia sabiae LMG 24235 0.16 QEN71_RS00080 carbon-nitrogen hydrolase family protein 0.58 QEN71_RS26810 D-aminoacyl-tRNA deacylase low > 153
Burkholderia phytofirmans PsJN 0.16 BPHYT_RS03545 apolipoprotein acyltransferase 0.59 BPHYT_RS16635 D-aminoacyl-tRNA deacylase — —
Acidovorax sp. GW101-3H11 0.14 Ac3H11_1207 FIG003879: Predicted amidohydrolase 0.52 Ac3H11_4677 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) low > 79
Cupriavidus basilensis FW507-4G11 0.14 RR42_RS05880 acyltransferase 0.59 RR42_RS02675 D-tyrosyl-tRNA(Tyr) deacylase low > 128
Ralstonia solanacearum GMI1000 0.14 RS_RS13310 carbon-nitrogen hydrolase family protein 0.59 RS_RS02470 D-aminoacyl-tRNA deacylase — —
Shewanella sp. ANA-3 0.14 Shewana3_3642 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (RefSeq) 0.64 Shewana3_0314 D-tyrosyl-tRNA(Tyr) deacylase (RefSeq) low > 73
Erwinia tracheiphila SCR3 0.13 LU632_RS16420 deaminated glutathione amidase 0.75 LU632_RS22165 dtd D-aminoacyl-tRNA deacylase low > 74
Shewanella oneidensis MR-1 0.13 SO4092 hydrolase, carbon-nitrogen family (NCBI ptt file) 0.67 SO4398 conserved hypothetical protein TIGR00256 (NCBI ptt file) low > 76
Herbaspirillum seropedicae SmR1 0.13 HSERO_RS07150 apolipoprotein acyltransferase 0.54 HSERO_RS02025 D-tyrosyl-tRNA(Tyr) deacylase low > 78
Marinobacter adhaerens HP15 0.12 HP15_2449 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 0.52 HP15_431 D-tyrosyl-tRNA(Tyr) deacylase low > 73
Shewanella loihica PV-4 0.12 Shew_0409 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (RefSeq) 0.65 Shew_3542 D-tyrosyl-tRNA deacylase (RefSeq) low > 60
Acinetobacter radioresistens SK82 0.11 MPMX26_00580 Deaminated glutathione amidase 0.54 MPMX26_02965 D-aminoacyl-tRNA deacylase low > 36

Not shown: 6 genomes with orthologs for b0219 only; 19 genomes with orthologs for b3887 only