Conservation of cofitness between b3172 and b3389 in Escherichia coli BW25113

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3172 argG argininosuccinate synthase (NCBI) 1.0 b3389 aroB 3-dehydroquinate synthase (NCBI) 0.92 20
Escherichia coli Nissle 1917 1.00 ECOLIN_RS18275 argininosuccinate synthase 0.99 ECOLIN_RS19360 3-dehydroquinate synthase low > 52
Escherichia coli ECOR38 1.00 HEPCGN_16965 argG argininosuccinate synthase 1.00 HEPCGN_15935 aroB 3-dehydroquinate synthase low > 85
Escherichia fergusonii Becca 1.00 EFB2_00651 Argininosuccinate synthase 1.00 EFB2_00439 3-dehydroquinate synthase 0.42 31
Escherichia coli ECRC101 1.00 MCAODC_08610 argG argininosuccinate synthase 0.99 MCAODC_07645 aroB 3-dehydroquinate synthase — —
Escherichia coli ECRC99 1.00 KEDOAH_10060 argG argininosuccinate synthase 0.99 KEDOAH_11025 aroB 3-dehydroquinate synthase — —
Escherichia coli ECRC98 1.00 JDDGAC_21715 argG argininosuccinate synthase 0.99 JDDGAC_20745 aroB 3-dehydroquinate synthase — —
Escherichia coli ECRC101 1.00 OKFHMN_18090 argG argininosuccinate synthase 0.99 OKFHMN_17115 aroB 3-dehydroquinate synthase — —
Escherichia coli ECRC102 1.00 NIAGMN_15850 argG argininosuccinate synthase 0.99 NIAGMN_14885 aroB 3-dehydroquinate synthase — —
Escherichia coli ECOR27 1.00 NOLOHH_09890 argG argininosuccinate synthase 1.00 NOLOHH_08905 aroB 3-dehydroquinate synthase low > 57
Escherichia coli ECRC62 1.00 BNILDI_01645 argG argininosuccinate synthase 1.00 BNILDI_02615 aroB 3-dehydroquinate synthase — —
Escherichia coli BL21 1.00 ECD_03038 argininosuccinate synthetase 1.00 ECD_03241 3-dehydroquinate synthase low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00528 Argininosuccinate synthase 0.99 OHPLBJKB_00314 3-dehydroquinate synthase low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.97 GFF2913 Argininosuccinate synthase (EC 6.3.4.5) 0.86 GFF630 3-dehydroquinate synthase (EC 4.2.3.4) low > 78
Klebsiella michiganensis M5al 0.95 BWI76_RS25115 argininosuccinate synthase 0.85 BWI76_RS26085 3-dehydroquinate synthase 0.57 83
Enterobacter sp. TBS_079 0.95 MPMX20_04077 Argininosuccinate synthase 0.89 MPMX20_04278 3-dehydroquinate synthase 0.85 51
Enterobacter asburiae PDN3 0.95 EX28DRAFT_3224 argininosuccinate synthase (EC 6.3.4.5) 0.88 EX28DRAFT_4153 3-dehydroquinate synthase (EC 4.2.3.4) low > 76
Pectobacterium carotovorum WPP14 0.93 HER17_RS21055 argininosuccinate synthase 0.79 HER17_RS01780 3-dehydroquinate synthase 0.73 50
Dickeya dianthicola 67-19 0.92 HGI48_RS00355 argininosuccinate synthase 0.80 HGI48_RS19675 3-dehydroquinate synthase — —
Dickeya dianthicola ME23 0.92 DZA65_RS00355 argininosuccinate synthase 0.80 DZA65_RS20760 3-dehydroquinate synthase — —
Dickeya dadantii 3937 0.92 DDA3937_RS20890 argininosuccinate synthase 0.81 DDA3937_RS19545 3-dehydroquinate synthase — —
Rahnella sp. WP5 0.90 EX31_RS13445 argininosuccinate synthase 0.84 EX31_RS04720 3-dehydroquinate synthase — —
Paraburkholderia sabiae LMG 24235 0.80 QEN71_RS09235 argininosuccinate synthase 0.51 QEN71_RS28035 3-dehydroquinate synthase 0.76 60
Rhodopseudomonas palustris CGA009 0.79 TX73_002040 argininosuccinate synthase 0.37 TX73_002610 3-dehydroquinate synthase — —
Castellaniella sp019104865 MT123 0.79 ABCV34_RS05390 argininosuccinate synthase 0.46 ABCV34_RS12705 3-dehydroquinate synthase — —
Acinetobacter radioresistens SK82 0.78 MPMX26_02260 Argininosuccinate synthase 0.50 MPMX26_02810 3-dehydroquinate synthase — —
Ralstonia sp. UNC404CL21Col 0.78 ABZR87_RS00835 argininosuccinate synthase 0.50 ABZR87_RS02590 3-dehydroquinate synthase low > 80
Acidovorax sp. GW101-3H11 0.78 Ac3H11_2616 Argininosuccinate synthase (EC 6.3.4.5) 0.50 Ac3H11_4705 3-dehydroquinate synthase (EC 4.2.3.4) — —
Ralstonia solanacearum UW163 0.77 UW163_RS08445 argininosuccinate synthase 0.50 UW163_RS06680 3-dehydroquinate synthase — —
Ralstonia solanacearum IBSBF1503 0.77 RALBFv3_RS05180 argininosuccinate synthase 0.50 RALBFv3_RS06935 3-dehydroquinate synthase — —
Ralstonia solanacearum GMI1000 0.77 RS_RS12800 argininosuccinate synthase 0.51 RS_RS14880 3-dehydroquinate synthase — —
Ralstonia solanacearum PSI07 0.77 RPSI07_RS12120 argininosuccinate synthase 0.50 RPSI07_RS10300 3-dehydroquinate synthase — —
Variovorax sp. SCN45 0.77 GFF3096 Argininosuccinate synthase (EC 6.3.4.5) 0.49 GFF5325 3-dehydroquinate synthase (EC 4.2.3.4) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.76 GFF294 Argininosuccinate synthase (EC 6.3.4.5) 0.50 GFF1331 3-dehydroquinate synthase (EC 4.2.3.4) — —
Variovorax sp. OAS795 0.76 ABID97_RS21670 argininosuccinate synthase 0.53 ABID97_RS23255 3-dehydroquinate synthase — —
Erwinia tracheiphila SCR3 0.16 LU632_RS19605 argininosuccinate synthase 0.82 LU632_RS22865 aroB 3-dehydroquinate synthase low > 74
Serratia liquefaciens MT49 0.15 IAI46_24505 argininosuccinate synthase 0.81 IAI46_23700 3-dehydroquinate synthase 0.82 32
Rhodospirillum rubrum S1H 0.15 Rru_A3751 Argininosuccinate synthase (NCBI) 0.41 Rru_A3741 3-dehydroquinate synthase (NCBI) — —
Shewanella loihica PV-4 0.15 Shew_0205 argininosuccinate synthase (RefSeq) 0.60 Shew_0214 3-dehydroquinate synthase (RefSeq) low > 60
Synechococcus elongatus PCC 7942 0.14 Synpcc7942_0009 argG argininosuccinate synthase 0.40 Synpcc7942_0525 aroB 3-dehydroquinate synthase — —
Sphingomonas koreensis DSMZ 15582 0.14 Ga0059261_1393 argininosuccinate synthase (EC 6.3.4.5) 0.36 Ga0059261_3591 3-dehydroquinate synthase (EC 4.2.3.4) — —
Phaeobacter inhibens DSM 17395 0.14 PGA1_c34920 argininosuccinate synthase ArgG 0.38 PGA1_c14100 3-dehydroquinate synthase AroB — —
Sinorhizobium meliloti 1021 0.14 SMc03826 argininosuccinate synthase 0.38 SMc00696 3-dehydroquinate synthase — —
Azospirillum brasilense Sp245 0.14 AZOBR_RS00785 argininosuccinate synthase 0.38 AZOBR_RS03220 3-dehydroquinate synthase — —
Agrobacterium fabrum C58 0.14 Atu2667 argininosuccinate synthase 0.38 Atu3625 3-dehydroquinate synthase — —
Rhizobium sp. OAE497 0.14 ABIE40_RS18150 argininosuccinate synthase 0.38 ABIE40_RS17670 3-dehydroquinate synthase — —
Shewanella oneidensis MR-1 0.14 SO0278 argG argininosuccinate synthase (NCBI ptt file) 0.61 SO0287 aroB 3-dehydroquinate synthase (NCBI ptt file) low > 76
Caulobacter crescentus NA1000 0.13 CCNA_00128 argininosuccinate synthase 0.41 CCNA_03104 3-dehydroquinate synthase — —
Caulobacter crescentus NA1000 Δfur 0.13 CCNA_00128 argininosuccinate synthase 0.41 CCNA_03104 3-dehydroquinate synthase low > 67
Dinoroseobacter shibae DFL-12 0.13 Dshi_3472 Argininosuccinate synthase (RefSeq) 0.36 Dshi_1608 3-dehydroquinate synthase (RefSeq) — —
Shewanella sp. ANA-3 0.13 Shewana3_3902 argininosuccinate synthase (RefSeq) 0.61 Shewana3_3893 aroB 3-dehydroquinate synthase (RefSeq) 0.87 42
Azospirillum sp. SherDot2 0.13 MPMX19_02369 Argininosuccinate synthase 0.37 MPMX19_02639 3-dehydroquinate synthase — —
Paraburkholderia bryophila 376MFSha3.1 0.13 H281DRAFT_04120 argininosuccinate synthase 0.51 H281DRAFT_05615 3-dehydroquinate synthase — —
Magnetospirillum magneticum AMB-1 0.13 AMB_RS05720 argininosuccinate synthase 0.40 AMB_RS19865 3-dehydroquinate synthase — —
Mycobacterium tuberculosis H37Rv 0.13 Rv1658 Probable argininosuccinate synthase ArgG 0.29 Rv2538c 3-dehydroquinate synthase AroB — —
Dechlorosoma suillum PS 0.13 Dsui_3248 argininosuccinate synthase 0.53 Dsui_1095 3-dehydroquinate synthase — —
Burkholderia phytofirmans PsJN 0.13 BPHYT_RS15920 argininosuccinate synthase 0.52 BPHYT_RS17885 3-dehydroquinate synthase 0.91 21
Brevundimonas sp. GW460-12-10-14-LB2 0.12 A4249_RS14275 argininosuccinate synthase 0.38 A4249_RS04175 3-dehydroquinate synthase — —
Paraburkholderia graminis OAS925 0.12 ABIE53_003355 argininosuccinate synthase 0.52 ABIE53_003740 3-dehydroquinate synthase — —
Pseudomonas stutzeri RCH2 0.12 Psest_3121 argininosuccinate synthase 0.53 Psest_3713 3-dehydroquinate synthase — —
Pseudomonas putida KT2440 0.12 PP_1088 Argininosuccinate synthase 0.55 PP_5078 3-dehydroquinate synthase — —
Pseudomonas sp. S08-1 0.12 OH686_03930 argininosuccinate synthase 0.54 OH686_10015 3-dehydroquinate synthase — —
Pseudomonas sp. RS175 0.12 PFR28_03353 Argininosuccinate synthase 0.54 PFR28_05013 3-dehydroquinate synthase — —
Pseudomonas fluorescens SBW25 0.11 PFLU_RS05725 argininosuccinate synthase 0.55 PFLU_RS02030 3-dehydroquinate synthase — —
Pseudomonas fluorescens SBW25-INTG 0.11 PFLU_RS05725 argininosuccinate synthase 0.55 PFLU_RS02030 3-dehydroquinate synthase — —
Marinobacter adhaerens HP15 0.11 HP15_2367 argininosuccinate synthase 0.53 HP15_480 3-dehydroquinate synthase — —
Rhodanobacter sp. FW510-T8 0.09 OKGIIK_09465 argG argininosuccinate synthase 0.42 OKGIIK_11185 aroB 3-dehydroquinate synthase — —

Not shown: 7 genomes with orthologs for b3172 only; 23 genomes with orthologs for b3389 only