Conservation of cofitness between b0004 and b2913 in Escherichia coli BW25113

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b0004 thrC threonine synthase (NCBI) 1.0 b2913 serA D-3-phosphoglycerate dehydrogenase (NCBI) 0.93 9
Escherichia coli ECRC99 1.00 KEDOAH_17055 thrC threonine synthase 1.00 KEDOAH_08680 serA phosphoglycerate dehydrogenase — —
Escherichia coli ECRC98 1.00 JDDGAC_14695 thrC threonine synthase 1.00 JDDGAC_23100 serA phosphoglycerate dehydrogenase — —
Escherichia coli ECRC101 1.00 OKFHMN_11100 thrC threonine synthase 1.00 OKFHMN_19460 serA phosphoglycerate dehydrogenase — —
Escherichia coli ECRC102 1.00 NIAGMN_08950 thrC threonine synthase 1.00 NIAGMN_17225 serA phosphoglycerate dehydrogenase — —
Escherichia fergusonii Becca 1.00 EFB2_04039 Threonine synthase 1.00 EFB2_00990 D-3-phosphoglycerate dehydrogenase low > 86
Escherichia coli ECRC62 1.00 BNILDI_08170 thrC threonine synthase 1.00 BNILDI_09905 serA phosphoglycerate dehydrogenase — —
Escherichia coli ECOR27 1.00 NOLOHH_03430 thrC threonine synthase 1.00 NOLOHH_11370 serA phosphoglycerate dehydrogenase low > 57
Escherichia coli ECRC101 1.00 MCAODC_01615 thrC threonine synthase 1.00 MCAODC_09980 serA phosphoglycerate dehydrogenase — —
Escherichia coli BL21 1.00 ECD_00004 L-threonine synthase 1.00 ECD_02744 D-3-phosphoglycerate dehydrogenase 0.62 25
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03656 Threonine synthase 1.00 OHPLBJKB_00803 D-3-phosphoglycerate dehydrogenase low > 73
Escherichia coli ECOR38 0.99 HEPCGN_09105 thrC threonine synthase 1.00 HEPCGN_18760 serA phosphoglycerate dehydrogenase low > 85
Escherichia coli Nissle 1917 0.99 ECOLIN_RS00020 threonine synthase 1.00 ECOLIN_RS16210 phosphoglycerate dehydrogenase low > 52
Enterobacter asburiae PDN3 0.93 EX28DRAFT_3616 threonine synthase 0.92 EX28DRAFT_2965 Phosphoglycerate dehydrogenase and related dehydrogenases — —
Enterobacter sp. TBS_079 0.93 MPMX20_00712 Threonine synthase 0.93 MPMX20_03771 D-3-phosphoglycerate dehydrogenase 0.91 21
Klebsiella michiganensis M5al 0.92 BWI76_RS04255 threonine synthase 0.93 BWI76_RS23920 D-3-phosphoglycerate dehydrogenase 0.84 46
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF1080 Threonine synthase (EC 4.2.3.1) 0.95 GFF3013 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) low > 78
Rahnella sp. WP5 0.85 EX31_RS03935 threonine synthase 0.82 EX31_RS21470 phosphoglycerate dehydrogenase 0.83 82
Serratia liquefaciens MT49 0.84 IAI46_03040 threonine synthase 0.85 IAI46_20900 phosphoglycerate dehydrogenase 0.78 28
Pantoea sp. MT58 0.81 IAI47_16205 threonine synthase 0.87 IAI47_03725 phosphoglycerate dehydrogenase 0.89 40
Dickeya dadantii 3937 0.80 DDA3937_RS18405 threonine synthase 0.83 DDA3937_RS18480 phosphoglycerate dehydrogenase 0.83 11
Dickeya dianthicola ME23 0.80 DZA65_RS19475 threonine synthase 0.82 DZA65_RS19540 phosphoglycerate dehydrogenase 0.55 51
Erwinia tracheiphila SCR3 0.79 LU632_RS02620 thrC threonine synthase 0.86 LU632_RS05855 serA phosphoglycerate dehydrogenase — —
Dickeya dianthicola 67-19 0.79 HGI48_RS18335 threonine synthase 0.82 HGI48_RS18400 phosphoglycerate dehydrogenase 0.67 24
Pectobacterium carotovorum WPP14 0.79 HER17_RS02805 threonine synthase 0.85 HER17_RS02725 phosphoglycerate dehydrogenase 0.89 50
Vibrio cholerae E7946 ATCC 55056 0.68 CSW01_11965 threonine synthase 0.74 CSW01_12555 phosphoglycerate dehydrogenase low > 62
Alteromonas macleodii MIT1002 0.65 MIT1002_03084 Threonine synthase 0.71 MIT1002_02993 D-3-phosphoglycerate dehydrogenase 0.95 20
Shewanella loihica PV-4 0.58 Shew_1081 threonine synthase (RefSeq) 0.70 Shew_3196 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.98 17
Shewanella sp. ANA-3 0.56 Shewana3_1141 threonine synthase (RefSeq) 0.70 Shewana3_3416 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.89 49
Shewanella oneidensis MR-1 0.55 SO3413 thrC threonine synthase (NCBI ptt file) 0.70 SO0862 serA D-3-phosphoglycerate dehydrogenase (NCBI ptt file) 0.92 46
Shewanella amazonensis SB2B 0.55 Sama_0907 threonine synthase (RefSeq) 0.69 Sama_2949 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.90 49
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.2954.1 Threonine synthase (EC 4.2.3.1) 0.62 Xcc-8004.2931.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.76 49
Lysobacter sp. OAE881 0.30 ABIE51_RS17530 threonine synthase 0.60 ABIE51_RS13245 phosphoglycerate dehydrogenase low > 62
Rhodanobacter denitrificans MT42 0.28 LRK55_RS09995 threonine synthase 0.62 LRK55_RS02935 phosphoglycerate dehydrogenase low > 63
Rhodanobacter denitrificans FW104-10B01 0.28 LRK54_RS10355 threonine synthase 0.62 LRK54_RS03185 phosphoglycerate dehydrogenase low > 59
Dyella japonica UNC79MFTsu3.2 0.28 ABZR86_RS15975 threonine synthase (EC 4.2.3.1) (from data) 0.64 ABZR86_RS09635 phosphoglycerate dehydrogenase 0.95 29
Pseudomonas stutzeri RCH2 0.28 Psest_3125 threonine synthase 0.66 Psest_3873 Phosphoglycerate dehydrogenase and related dehydrogenases — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.28 Psyr_1291 L-threonine synthase 0.67 Psyr_4852 D-3-phosphoglycerate dehydrogenase — —
Rhodanobacter sp. FW510-T8 0.28 OKGIIK_13570 thrC threonine synthase 0.61 OKGIIK_10055 serA phosphoglycerate dehydrogenase low > 52
Pseudomonas fluorescens FW300-N2E3 0.28 AO353_04350 threonine synthase 0.66 AO353_08510 3-phosphoglycerate dehydrogenase — —
Pseudomonas fluorescens FW300-N2C3 0.28 AO356_06370 threonine synthase 0.65 AO356_10300 3-phosphoglycerate dehydrogenase — —
Bosea sp. OAE506 0.28 ABIE41_RS22985 threonine synthase 0.55 ABIE41_RS08410 phosphoglycerate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a 0.28 Psyr_1291 L-threonine synthase 0.67 Psyr_4852 D-3-phosphoglycerate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.28 Pf6N2E2_3142 Threonine synthase (EC 4.2.3.1) 0.66 Pf6N2E2_3932 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) — —
Pseudomonas putida KT2440 0.27 PP_1471 Threonine synthase 0.66 PP_5155 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase — —
Pseudomonas simiae WCS417 0.27 PS417_22880 threonine synthase 0.65 PS417_27040 3-phosphoglycerate dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_1724 Threonine synthase (EC 4.2.3.1) 0.66 PfGW456L13_943 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) — —
Pseudomonas fluorescens FW300-N1B4 0.27 Pf1N1B4_3014 Threonine synthase (EC 4.2.3.1) 0.66 Pf1N1B4_2272 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) — —
Pseudomonas sp. RS175 0.27 PFR28_00334 Threonine synthase 0.66 PFR28_04842 D-3-phosphoglycerate dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS24545 threonine synthase 0.65 PFLU_RS28695 phosphoglycerate dehydrogenase — —
Pseudomonas fluorescens SBW25 0.27 PFLU_RS24545 threonine synthase 0.65 PFLU_RS28695 phosphoglycerate dehydrogenase low > 109
Pseudomonas sp. S08-1 0.27 OH686_17765 threonine synthase 0.67 OH686_11280 D-3-phosphoglycerate dehydrogenase low > 80
Azospirillum brasilense Sp245 0.26 AZOBR_RS10545 threonine synthase 0.55 AZOBR_RS10940 3-phosphoglycerate dehydrogenase — —
Azospirillum sp. SherDot2 0.26 MPMX19_00671 Threonine synthase 0.55 MPMX19_00753 D-3-phosphoglycerate dehydrogenase — —
Rhizobium sp. OAE497 0.25 ABIE40_RS04230 threonine synthase 0.58 ABIE40_RS30040 phosphoglycerate dehydrogenase — —
Marinobacter adhaerens HP15 0.25 HP15_765 threonine synthase 0.65 HP15_2554 D-3-phosphoglycerate dehydrogenase-like protein — —
Rhodospirillum rubrum S1H 0.25 Rru_A3233 Threonine synthase (NCBI) 0.58 Rru_A2456 Phosphoglycerate dehydrogenase (NCBI) — —
Castellaniella sp019104865 MT123 0.24 ABCV34_RS02300 threonine synthase 0.53 ABCV34_RS15150 phosphoglycerate dehydrogenase — —
Variovorax sp. OAS795 0.23 ABID97_RS25760 threonine synthase 0.63 ABID97_RS07235 phosphoglycerate dehydrogenase — —
Variovorax sp. SCN45 0.22 GFF2800 Threonine synthase (EC 4.2.3.1) 0.63 GFF2538 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) — —
Acidovorax sp. GW101-3H11 0.22 Ac3H11_1505 Threonine synthase (EC 4.2.3.1) 0.65 Ac3H11_4790 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) — —
Cupriavidus basilensis FW507-4G11 0.22 RR42_RS12535 threonine synthase 0.48 RR42_RS27010 D-3-phosphoglycerate dehydrogenase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.22 GFF3936 Threonine synthase (EC 4.2.3.1) 0.61 GFF149 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) — —
Bifidobacterium breve UCC2003 0.20 BBR_RS14070 threonine synthase 0.45 BBR_RS16970 phosphoglycerate dehydrogenase 0.80 17

Not shown: 30 genomes with orthologs for b0004 only; 2 genomes with orthologs for b2913 only