Conservation of cofitness between b0114 and b0118 in Escherichia coli BW25113

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b0114 aceE pyruvate dehydrogenase subunit E1 (NCBI) 1.0 b0118 acnB aconitate hydratase (NCBI) 0.48 10
Escherichia coli ECRC101 1.00 MCAODC_01015 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 1.00 MCAODC_00995 acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Escherichia coli ECRC101 1.00 OKFHMN_10500 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 1.00 OKFHMN_10480 acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Escherichia coli Nissle 1917 1.00 ECOLIN_RS00640 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 1.00 ECOLIN_RS00660 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03547 Pyruvate dehydrogenase E1 component 1.00 OHPLBJKB_03543 Aconitate hydratase B
Escherichia coli ECRC62 1.00 BNILDI_08765 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 1.00 BNILDI_08785 acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Escherichia coli ECRC99 1.00 KEDOAH_17655 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 1.00 KEDOAH_17675 acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Escherichia coli ECRC98 1.00 JDDGAC_14095 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 1.00 JDDGAC_14075 acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Escherichia coli ECRC102 1.00 NIAGMN_08350 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 1.00 NIAGMN_08330 acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Escherichia coli ECOR27 1.00 NOLOHH_02845 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 1.00 NOLOHH_02825 acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Escherichia fergusonii Becca 1.00 EFB2_03931 Pyruvate dehydrogenase E1 component 1.00 EFB2_03927 Aconitate hydratase B low > 86
Escherichia coli BL21 1.00 ECD_00113 pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate-binding 1.00 ECD_00117 aconitate hydratase 2; aconitase B; 2-methyl-cis-aconitate hydratase
Escherichia coli ECOR38 1.00 HEPCGN_08480 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 1.00 HEPCGN_08460 acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 0.96 7
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.97 GFF122 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 0.92 GFF115 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) low > 78
Klebsiella michiganensis M5al 0.96 BWI76_RS04880 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.95 BWI76_RS04910 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Enterobacter sp. TBS_079 0.95 MPMX20_00807 Pyruvate dehydrogenase E1 component 0.94 MPMX20_00812 Aconitate hydratase B low > 85
Enterobacter asburiae PDN3 0.95 EX28DRAFT_3710 pyruvate dehydrogenase E1 component, homodimeric type 0.95 EX28DRAFT_3715 aconitase (EC 4.2.1.3)
Pectobacterium carotovorum WPP14 0.92 HER17_RS03290 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.91 HER17_RS03360 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Pantoea sp. MT58 0.92 IAI47_15810 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.92 IAI47_15770 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Erwinia tracheiphila SCR3 0.92 LU632_RS03080 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.91 LU632_RS20210 acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Dickeya dadantii 3937 0.91 DDA3937_RS17925 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.91 DDA3937_RS17885 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Dickeya dianthicola ME23 0.91 DZA65_RS19000 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.91 DZA65_RS18970 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Dickeya dianthicola 67-19 0.91 HGI48_RS17850 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.91 HGI48_RS17825 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Rahnella sp. WP5 0.91 EX31_RS03480 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.90 EX31_RS03400 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase low > 89
Serratia liquefaciens MT49 0.90 IAI46_21325 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.92 IAI46_21305 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Vibrio cholerae E7946 ATCC 55056 0.74 CSW01_12220 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.84 CSW01_03185 aconitate hydratase B
Shewanella amazonensis SB2B 0.74 Sama_0375 aceE pyruvate dehydrogenase subunit E1 (RefSeq) 0.83 Sama_0382 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase (RefSeq)
Shewanella sp. ANA-3 0.69 Shewana3_0426 aceE pyruvate dehydrogenase subunit E1 (RefSeq) 0.81 Shewana3_0433 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase (RefSeq)
Shewanella loihica PV-4 0.69 Shew_3431 aceE pyruvate dehydrogenase subunit E1 (RefSeq) 0.81 Shew_3424 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase (RefSeq)
Shewanella oneidensis MR-1 0.69 SO0424 aceE pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase (NCBI ptt file) 0.81 SO0432 acnB aconitate hydratase 2 (NCBI ptt file)
Alteromonas macleodii MIT1002 0.66 MIT1002_03003 Pyruvate dehydrogenase E1 component 0.76 MIT1002_00774 Aconitate hydratase 2 low > 70
Kangiella aquimarina DSM 16071 0.65 B158DRAFT_2144 pyruvate dehydrogenase E1 component, homodimeric type 0.77 B158DRAFT_2500 aconitase (EC 4.2.1.3)
Dinoroseobacter shibae DFL-12 0.62 Dshi_1968 2-oxo-acid dehydrogenase E1 subunit, homodimeric type (RefSeq) 0.18 Dshi_2060 Aconitate hydratase (EC 4.2.1.3) (from data) low > 64
Cupriavidus basilensis FW507-4G11 0.61 RR42_RS07365 pyruvate dehydrogenase 0.74 RR42_RS23515 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase low > 128
Acidovorax sp. GW101-3H11 0.61 Ac3H11_4093 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 0.71 Ac3H11_3150 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS13470 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.74 ABZR87_RS20490 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Ralstonia solanacearum GMI1000 0.60 RS_RS08055 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.73 RS_RS18745 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Pseudomonas putida KT2440 0.60 PP_0339 Pyruvate dehydrogenase E1 component 0.80 PP_2339 bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase
Pseudomonas fluorescens FW300-N1B4 0.60 Pf1N1B4_1476 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 0.80 Pf1N1B4_4564 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Pseudomonas fluorescens GW456-L13 0.60 PfGW456L13_214 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 0.80 PfGW456L13_3378 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_0518 2-oxo-acid dehydrogenase E1 component homodimeric type 0.81 Psyr_1726 aconitase
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_0518 2-oxo-acid dehydrogenase E1 component homodimeric type 0.81 Psyr_1726 aconitase
Pseudomonas stutzeri RCH2 0.60 Psest_0448 pyruvate dehydrogenase E1 component, homodimeric type 0.81 Psest_2309 aconitate hydratase 2
Pseudomonas sp. S08-1 0.60 OH686_09710 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.80 OH686_03970 aconitate hydratase 2
Pseudomonas sp. RS175 0.60 PFR28_05061 Pyruvate dehydrogenase E1 component 0.80 PFR28_02376 Aconitate hydratase B
Hydrogenophaga sp. GW460-11-11-14-LB1 0.60 GFF4890 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 0.72 GFF3374 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) low > 90
Pseudomonas fluorescens FW300-N2C3 0.60 AO356_08960 pyruvate dehydrogenase 0.80 AO356_24390 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Pseudomonas fluorescens FW300-N2E2 0.60 Pf6N2E2_3674 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 0.80 Pf6N2E2_564 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Pseudomonas fluorescens SBW25-INTG 0.60 PFLU_RS02275 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.80 PFLU_RS17020 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Pseudomonas fluorescens SBW25 0.60 PFLU_RS02275 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.80 PFLU_RS17020 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Dechlorosoma suillum PS 0.60 Dsui_1578 pyruvate dehydrogenase E1 component, homodimeric type 0.71 Dsui_2205 aconitate hydratase 2
Variovorax sp. SCN45 0.59 GFF967 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 0.72 GFF3905 Aconitate hydratase 2 (EC 4.2.1.3) low > 127
Pseudomonas simiae WCS417 0.59 PS417_02220 pyruvate dehydrogenase 0.79 PS417_14990 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_12865 pyruvate dehydrogenase 0.80 AO353_21605 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Burkholderia phytofirmans PsJN 0.59 BPHYT_RS12840 pyruvate dehydrogenase 0.73 BPHYT_RS10160 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase low > 109
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS05725 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.74 QEN71_RS19735 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Castellaniella sp019104865 MT123 0.58 ABCV34_RS04160 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.74 ABCV34_RS01645 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Lysobacter sp. OAE881 0.58 ABIE51_RS18795 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.74 ABIE51_RS11520 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Marinobacter adhaerens HP15 0.58 HP15_3046 pyruvate dehydrogenase subunit E1 0.73 HP15_2203 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Acinetobacter radioresistens SK82 0.57 MPMX26_02925 Pyruvate dehydrogenase E1 component 0.73 MPMX26_01191 Aconitate hydratase B
Xanthomonas campestris pv. campestris strain 8004 0.57 Xcc-8004.754.1 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 0.73 Xcc-8004.2891.1 Aconitate hydratase 2 (EC 4.2.1.3)
Dyella japonica UNC79MFTsu3.2 0.56 ABZR86_RS12410 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.73 ABZR86_RS02170 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase low > 74
Azospirillum sp. SherDot2 0.07 MPMX19_03172 Pyruvate dehydrogenase E1 component 0.74 MPMX19_04841 Aconitate hydratase B

Not shown: 14 genomes with orthologs for b0114 only; 6 genomes with orthologs for b0118 only