Homologs of Psyr_2705 from Pseudomonas syringae pv. syringae B728a

Helix-turn-helix motif protein
SEED: Putrescine utilization regulator

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas syringae pv. syringae B728a Psyr_2705 Helix-turn-helix motif protein sig. 100 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2705 Helix-turn-helix motif protein sig. 100 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4357 Putrescine utilization regulator sig. 87 90
o Pseudomonas sp. DMC3 GFF1632 HTH-type transcriptional regulator PuuR cofit 87 90
o Pseudomonas fluorescens FW300-N2E3 AO353_29285 XRE family transcriptional regulator strong 86 90
o Pseudomonas sp. BP01 JOY50_RS05840 cupin domain-containing protein insig. 78 90
o Pseudomonas putida KT2440 PP_2884 XRE family transcriptional regulator strong 79 90
o Pseudomonas sp. SVBP6 COO64_RS10815 cupin domain-containing protein insig. 77 90
o Azospirillum brasilense Sp245 AZOBR_RS19640 aldehyde dehydrogenase strong 53 88
  Shewanella loihica PV-4 Shew_0970 XRE family transcriptional regulator (RefSeq) strong 51 90
  Pseudomonas sp. S08-1 OH686_13700 Putrescine utilization regulator strong 52 90
  Pseudomonas segetis P6 MPMX49_00005 HTH-type transcriptional regulator PuuR strong 51 90
o Burkholderia phytofirmans PsJN BPHYT_RS23170 XRE family transcriptional regulator insig. 52 90
  Pseudomonas stutzeri RCH2 Psest_3791 Predicted transcriptional regulators insig. 51 90
  Pseudomonas aeruginosa MRSN321 DY961_RS12395 cupin domain-containing protein strong 51 90
  Pseudomonas aeruginosa PA14 IKLFDK_26945 XRE family transcriptional regulator strong 51 90
  Pseudomonas aeruginosa PUPa3 DQ20_RS49735 cupin domain-containing protein strong 51 90
  Shewanella amazonensis SB2B Sama_2646 XRE family transcriptional regulator (RefSeq) strong 51 90
  Pseudomonas sp. SVBP6 COO64_RS01380 cupin domain-containing protein insig. 51 90
o Paraburkholderia sabiae LMG 24235 QEN71_RS12920 cupin domain-containing protein insig. 50 90
  Shewanella sp. ANA-3 Shewana3_3100 XRE family transcriptional regulator (RefSeq) strong 48 98
  Pseudomonas sp. BP01 JOY50_RS09135 cupin domain-containing protein insig. 49 90
  Pseudomonas sp. RS175 PFR28_04396 HTH-type transcriptional regulator PuuR strong 50 90
  Shewanella oneidensis MR-1 SO1265 transcriptional regulator, putative (NCBI ptt file) strong 50 90
  Pseudomonas putida KT2440 PP_5268 DNA-binding transcriptional repressor PuuR-putrescine strong 49 90
o Azospirillum sp. SherDot2 MPMX19_04921 HTH-type transcriptional regulator PuuR insig. 52 88
  Pseudomonas sp. DMC3 GFF387 HTH-type transcriptional regulator PuuR cofit 51 90
  Pseudomonas fluorescens GW456-L13 PfGW456L13_815 Putrescine utilization regulator strong 50 90
  Pseudomonas syringae pv. syringae B728a Psyr_0238 Helix-turn-helix motif protein insig. 49 90
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0238 Helix-turn-helix motif protein insig. 49 90
  Pseudomonas fluorescens SBW25 PFLU_RS29365 cupin domain-containing protein cofit 50 90
  Pseudomonas fluorescens SBW25-INTG PFLU_RS29365 cupin domain-containing protein strong 50 90
  Pseudomonas lactucae CFBP13502 GEMAOFIL_00005 HTH-type transcriptional regulator PuuR cofit 50 90
  Pseudomonas simiae WCS417 PS417_27690 XRE family transcriptional regulator strong 50 90
  Pseudomonas fluorescens FW300-N2E3 AO353_09140 XRE family transcriptional regulator strong 49 90
  Pseudomonas fluorescens FW300-N2C3 AO356_12635 XRE family transcriptional regulator strong 49 90
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4394 Putrescine utilization regulator strong 49 90
  Pseudomonas orientalis W4I3 QF045_RS02040 cupin domain-containing protein cofit 49 90
  Sinorhizobium meliloti 1021 SMc04387 aldehyde dehydrogenase insig. 48 90
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2147 Putrescine utilization regulator strong 49 90
  Xanthobacter sp. DMC5 GFF3339 HTH-type transcriptional regulator PuuR insig. 49 90
  Agrobacterium fabrum C58 Atu3328 aldehyde dehydrogenase strong 46 90
  Rhodospirillum rubrum S1H Rru_A2042 Transcriptional Regulator, XRE family with Cupin sensor domain (NCBI) insig. 50 88
  Bosea sp. OAE506 ABIE41_RS05345 cupin domain-containing protein insig. 45 89
  Pantoea sp. MT58 IAI47_07115 HTH-type transcriptional regulator PuuR insig. 39 91
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS01235 HTH-type transcriptional regulator PuuR cofit 38 91
  Klebsiella michiganensis M5al BWI76_RS10700 XRE family transcriptional regulator strong 39 88
  Serratia liquefaciens MT49 IAI46_17165 HTH-type transcriptional regulator PuuR strong 36 91
  Escherichia coli BL21 ECD_01276 repressor for the divergent puu operons, putrescine inducible strong 39 88
  Escherichia coli ECOR27 NOLOHH_20120 puuR HTH-type transcriptional regulator PuuR insig. 39 88
  Escherichia coli ECOR38 HEPCGN_25765 puuR HTH-type transcriptional regulator PuuR insig. 39 88
  Escherichia coli ECRC62 BNILDI_18270 puuR HTH-type transcriptional regulator PuuR insig. 39 88
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02383 HTH-type transcriptional regulator PuuR insig. 39 88
  Escherichia coli BW25113 b1299 puuR DNA-binding transcriptional repressor (NCBI) strong 39 88
  Klebsiella pneumoniae MKP103 KDGMDA_18340 HTH-type transcriptional regulator PuuR insig. 39 88
  Escherichia coli ECRC100 OKFHMN_02435 puuR HTH-type transcriptional regulator PuuR cofit 39 88
  Escherichia coli ECRC101 MCAODC_15835 puuR HTH-type transcriptional regulator PuuR insig. 39 88
  Escherichia coli ECRC102 NIAGMN_26605 puuR HTH-type transcriptional regulator PuuR insig. 39 88
  Escherichia coli ECRC98 JDDGAC_04980 puuR HTH-type transcriptional regulator PuuR insig. 39 88
  Escherichia coli ECRC99 KEDOAH_26340 puuR HTH-type transcriptional regulator PuuR no data 39 88
  Enterobacter asburiae PDN3 EX28DRAFT_1500 Predicted transcriptional regulators insig. 39 88
  Rahnella sp. WP5 EX31_RS17905 HTH-type transcriptional regulator PuuR insig. 35 91
  Serratia liquefaciens MT49 IAI46_10550 HTH-type transcriptional regulator PuuR insig. 37 88
  Cupriavidus basilensis FW507-4G11 RR42_RS00225 XRE family transcriptional regulator insig. 28 88
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS14960 XRE family transcriptional regulator insig. 31 87
o Ralstonia solanacearum UW163 UW163_RS12430 XRE family transcriptional regulator no data 31 87
  Pseudomonas sp. BP01 JOY50_RS05765 helix-turn-helix domain-containing protein no data 29 88
  Fusobacterium nucleatum SB010 HUW76_07320 helix-turn-helix domain-containing protein strong 23 90
  Pseudomonas fluorescens FW300-N2E3 AO353_24790 Cro/Cl family transcriptional regulator sig. 29 88
  Pseudomonas sp. SVBP6 COO64_RS21060 helix-turn-helix domain-containing protein insig. 29 88
  Pseudomonas putida KT2440 PP_2868 Transcriptional regulator, Cro/CI family strong 29 88
  Bosea sp. OAE506 ABIE41_RS10690 XRE family transcriptional regulator insig. 28 78
  Pseudomonas aeruginosa MRSN321 DY961_RS10735 cupin domain-containing protein insig. 28 88
  Pseudomonas aeruginosa PA14 IKLFDK_28600 Cro/Cl family transcriptional regulator insig. 28 88
  Pseudomonas aeruginosa PUPa3 DQ20_RS51325 cupin domain-containing protein insig. 28 88
o Ralstonia solanacearum GMI1000 RS_RS05775 XRE family transcriptional regulator insig. 31 87
  Paraburkholderia sabiae LMG 24235 QEN71_RS18365 cupin domain-containing protein strong 27 93
  Pseudomonas fluorescens GW456-L13 PfGW456L13_3219 Transcriptional regulator, Cro/CI family insig. 28 88
o Desulfovibrio vulgaris Miyazaki F DvMF_2356 transcriptional regulator, XRE family (RefSeq) insig. 31 85
o Desulfovibrio vulgaris Hildenborough JW710 DVU3066 DNA-binding protein (TIGR) sig. 29 88
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_03130 transcriptional regulator, XRE family with cupin sensor insig. 28 92
  Burkholderia phytofirmans PsJN BPHYT_RS07145 DNA-binding protein insig. 27 93
  Rahnella sp. WP5 EX31_RS05710 helix-turn-helix transcriptional regulator insig. 28 82
  Burkholderia phytofirmans PsJN BPHYT_RS22055 DNA-binding protein strong 27 90
  Paraburkholderia graminis OAS925 ABIE53_004168 transcriptional regulator with XRE-family HTH domain strong 27 92
  Xanthobacter sp. DMC5 GFF1030 HTH-type transcriptional regulator SutR insig. 28 90
  Klebsiella michiganensis M5al BWI76_RS13955 hypothetical protein insig. 30 81
  Fusobacterium nucleatum SB010 HUW76_01135 cupin domain-containing protein strong 26 90
  Enterobacter asburiae PDN3 EX28DRAFT_4383 transcriptional regulator, XRE family with cupin sensor strong 31 83
  Pseudomonas sp. SVBP6 COO64_RS14415 helix-turn-helix domain-containing protein cofit 30 83
  Enterobacter asburiae PDN3 EX28DRAFT_1223 Cupin domain/Helix-turn-helix insig. 28 82
  Pseudomonas aeruginosa MRSN321 DY961_RS23980 psdR;inference=COORDINATES transcriptional regulator PsdR sig. 30 88
  Pseudomonas aeruginosa PA14 IKLFDK_01585 transcriptional regulator PsdR strong 30 88
  Pseudomonas aeruginosa PUPa3 DQ20_RS56440 psdR;inference=COORDINATES transcriptional regulator PsdR sig. 30 88
  Serratia liquefaciens MT49 IAI46_11440 helix-turn-helix transcriptional regulator cofit 29 82
  Variovorax sp. OAS795 ABID97_RS13245 XRE family transcriptional regulator insig. 32 77
  Enterobacter sp. TBS_079 MPMX20_04570 HTH-type transcriptional regulator SutR strong 31 83
o Ralstonia solanacearum PSI07 RPSI07_RS18415 XRE family transcriptional regulator insig. 31 87
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4417 Transcriptional regulator insig. 31 81
  Pectobacterium carotovorum WPP14 HER17_RS21700 XRE family transcriptional regulator cofit 27 84