Homologs of Pf1N1B4_3529 from Pseudomonas fluorescens FW300-N1B4

Membrane bound c-di-GMP receptor LapD
SEED: Membrane bound c-di-GMP receptor LapD

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3529 Membrane bound c-di-GMP receptor LapD insig. 100 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4428 Membrane bound c-di-GMP receptor LapD insig. 84 100
o Pseudomonas fluorescens FW300-N2E3 AO353_18415 hypothetical protein insig. 84 100
o Pseudomonas sp. S08-1 OH686_20650 Membrane bound c-di-GMP receptor LapD insig. 67 100
  Pseudomonas sp. RS175 PFR28_04783 hypothetical protein strong 59 100
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1802 Membrane bound c-di-GMP receptor LapD insig. 59 100
  Pseudomonas fluorescens FW300-N2C3 AO356_10580 hypothetical protein cofit 59 100
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3983 Membrane bound c-di-GMP receptor LapD strong 59 100
  Pseudomonas fluorescens FW300-N2E3 AO353_11170 hypothetical protein strong 59 100
o Pseudomonas stutzeri RCH2 Psest_1864 diguanylate cyclase (GGDEF) domain insig. 60 100
  Pseudomonas fluorescens GW456-L13 PfGW456L13_546 Membrane bound c-di-GMP receptor LapD insig. 58 100
  Pseudomonas putida KT2440 PP_0165 GGDEF domain protein strong 58 100
  Pectobacterium carotovorum WPP14 HER17_RS05880 EAL domain-containing protein cofit 55 100
o Acidovorax sp. GW101-3H11 Ac3H11_2106 Membrane bound c-di-GMP receptor LapD insig. 33 99
  Alteromonas macleodii MIT1002 MIT1002_01618 Cyclic di-GMP phosphodiesterase Gmr insig. 25 100
  Marinobacter adhaerens HP15 HP15_3218 diguanylate cyclase/phosphodiesterase insig. 30 97
  Shewanella oneidensis MR-1 SO4323 GGDEF domain protein (NCBI ptt file) cofit 27 100
  Shewanella loihica PV-4 Shew_0307 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 25 100
  Shewanella sp. ANA-3 Shewana3_0376 diguanylate cyclase/phosphodiesterase (RefSeq) sig. 26 100
  Vibrio cholerae E7946 ATCC 55056 CSW01_19490 GGDEF domain-containing protein cofit 25 97
o Shewanella amazonensis SB2B Sama_3264 putative diguanylate phosphodiesterase (RefSeq) sig. 26 100
  Alteromonas macleodii MIT1002 MIT1002_01559 Cyclic di-GMP phosphodiesterase YfgF insig. 21 100
  Magnetospirillum magneticum AMB-1 AMB_RS03740 signal transduction protein insig. 27 73
  Shewanella loihica PV-4 Shew_2065 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 24 77
  Vibrio cholerae E7946 ATCC 55056 CSW01_02100 RNase E specificity factor CsrD cofit 25 79
  Pseudomonas sp. S08-1 OH686_21075 Sensory box/GGDEF family protein insig. 31 64
  Acidovorax sp. GW101-3H11 Ac3H11_4120 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 28 65
  Serratia liquefaciens MT49 IAI46_22725 RNase E specificity factor CsrD insig. 27 65
  Shewanella sp. ANA-3 Shewana3_2167 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 23 71
  Paraburkholderia sabiae LMG 24235 QEN71_RS13125 EAL domain-containing protein insig. 29 66
  Shewanella amazonensis SB2B Sama_2973 GGDEF domain-containing protein (RefSeq) insig. 27 65
  Agrobacterium fabrum C58 Atu3495 diguanylate cyclase sig. 26 68
  Erwinia tracheiphila SCR3 LU632_RS21455 csrD RNase E specificity factor CsrD insig. 24 79
  Rahnella sp. WP5 EX31_RS12230 RNase E specificity factor CsrD insig. 26 65
  Acidovorax sp. GW101-3H11 Ac3H11_903 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 26 63
  Marinobacter adhaerens HP15 HP15_215 sensory box/GGDEF family protein insig. 26 65
  Pseudomonas sp. S08-1 OH686_11905 hypothetical protein insig. 29 67
  Magnetospirillum magneticum AMB-1 AMB_RS18310 bifunctional diguanylate cyclase/phosphodiesterase cofit 27 64
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1842.1 Mlr3171 protein insig. 26 69
  Shewanella oneidensis MR-1 SO2507 GGDEF domain protein (NCBI ptt file) insig. 22 71
  Pseudomonas syringae pv. syringae B728a Psyr_2432 diguanylate cyclase/phosphodiesterase insig. 28 64
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2432 diguanylate cyclase/phosphodiesterase insig. 28 64
  Shewanella amazonensis SB2B Sama_0388 putative diguanylate phosphodiesterase (RefSeq) strong 25 66
  Shewanella amazonensis SB2B Sama_1829 putative diguanylate phosphodiesterase (RefSeq) insig. 23 69
  Rhodopseudomonas palustris CGA009 TX73_002740 bifunctional diguanylate cyclase/phosphodiesterase insig. 27 66
  Pantoea sp. MT58 IAI47_02430 RNase E specificity factor CsrD insig. 25 74
  Acidovorax sp. GW101-3H11 Ac3H11_1143 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) sig. 28 63
  Synechococcus elongatus PCC 7942 Synpcc7942_1716 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) strong 26 65
  Pectobacterium carotovorum WPP14 HER17_RS20175 RNase E specificity factor CsrD insig. 25 72
  Paraburkholderia graminis OAS925 ABIE53_001117 diguanylate cyclase (GGDEF)-like protein insig. 26 64
  Shewanella oneidensis MR-1 SO1500 sensory box protein (NCBI ptt file) strong 26 66
  Kangiella aquimarina DSM 16071 B158DRAFT_2394 diguanylate cyclase (GGDEF) domain strong 25 65
  Cupriavidus basilensis FW507-4G11 RR42_RS03995 diguanylate cyclase insig. 26 63
  Pseudomonas fluorescens SBW25 PFLU_RS05370 EAL domain-containing protein insig. 25 76
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05370 EAL domain-containing protein insig. 25 76
  Shewanella loihica PV-4 Shew_3125 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 26 63
  Shewanella oneidensis MR-1 SO0628 GGDEF domain protein (NCBI ptt file) insig. 25 66
  Shewanella sp. ANA-3 Shewana3_0620 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 24 66
  Pseudomonas syringae pv. syringae B728a Psyr_3942 diguanylate cyclase/phosphodiesterase insig. 24 76
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3942 diguanylate cyclase/phosphodiesterase insig. 24 76
  Castellaniella sp019104865 MT123 ABCV34_RS11385 LapD/MoxY N-terminal periplasmic domain-containing protein cofit 24 91
  Rhodospirillum rubrum S1H Rru_A2763 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) insig. 27 69
  Acidovorax sp. GW101-3H11 Ac3H11_2446 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 24 65
  Caulobacter crescentus NA1000 CCNA_03191 PAS-family GGDEF/EAL family protein cofit 27 65
  Caulobacter crescentus NA1000 Δfur CCNA_03191 PAS-family GGDEF/EAL family protein cofit 27 65
  Bosea sp. OAE506 ABIE41_RS19250 EAL domain-containing protein insig. 26 65
  Enterobacter asburiae PDN3 EX28DRAFT_3316 diguanylate cyclase (GGDEF) domain insig. 26 66
  Enterobacter sp. TBS_079 MPMX20_04172 putative signaling protein insig. 27 63
  Pseudomonas syringae pv. syringae B728a Psyr_2711 diguanylate cyclase/phosphodiesterase insig. 27 65
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2711 diguanylate cyclase/phosphodiesterase insig. 27 65
  Marinobacter adhaerens HP15 HP15_3980 diguanylate cyclase/phosphodiesterase insig. 27 64
  Acidovorax sp. GW101-3H11 Ac3H11_4268 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 28 63
  Shewanella sp. ANA-3 Shewana3_2929 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) insig. 26 66
  Pantoea sp. MT58 IAI47_14995 EAL domain-containing protein insig. 25 64
  Paraburkholderia sabiae LMG 24235 QEN71_RS10745 EAL domain-containing protein insig. 25 77
  Acidovorax sp. GW101-3H11 Ac3H11_4486 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 27 66
  Shewanella sp. ANA-3 Shewana3_2308 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) cofit 26 66
  Desulfovibrio vulgaris Hildenborough JW710 DVU0422 sensory box/GGDEF domain/EAL domain protein (TIGR) insig. 28 65
  Dechlorosoma suillum PS Dsui_0760 diguanylate cyclase (GGDEF) domain-containing protein cofit 27 61
  Acidovorax sp. GW101-3H11 Ac3H11_2218 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 27 65
  Klebsiella michiganensis M5al BWI76_RS25505 RNase E specificity factor CsrD strong 23 68
  Azospirillum sp. SherDot2 MPMX19_06128 hypothetical protein insig. 27 66
  Shewanella amazonensis SB2B Sama_3627 signal transduction protein (RefSeq) insig. 25 63
  Dickeya dianthicola ME23 DZA65_RS01405 RNase E specificity factor CsrD sig. 23 79
  Pantoea sp. MT58 IAI47_03280 EAL domain-containing protein insig. 26 63
  Pectobacterium carotovorum WPP14 HER17_RS11575 EAL domain-containing protein cofit 25 63
  Bosea sp. OAE506 ABIE41_RS11330 EAL domain-containing protein insig. 25 67
  Shewanella oneidensis MR-1 SO2216 sensory box protein (NCBI ptt file) insig. 26 66
  Dechlorosoma suillum PS Dsui_2894 diguanylate cyclase (GGDEF) domain-containing protein cofit 25 75
  Shewanella oneidensis MR-1 SO0437 sensory box protein (NCBI ptt file) strong 23 63
  Vibrio cholerae E7946 ATCC 55056 CSW01_03465 GGDEF-domain containing protein cofit 23 74
  Marinobacter adhaerens HP15 HP15_806 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) insig. 23 64
  Enterobacter asburiae PDN3 EX28DRAFT_3302 diguanylate cyclase (GGDEF) domain cofit 23 64
  Dickeya dianthicola 67-19 HGI48_RS01345 RNase E specificity factor CsrD cofit 23 79
  Cupriavidus basilensis FW507-4G11 RR42_RS09980 diguanylate phosphodiesterase insig. 26 70
  Enterobacter sp. TBS_079 MPMX20_04158 RNase E specificity factor CsrD strong 23 64
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2512 sensory box/GGDEF domain/EAL domain protein insig. 25 67
  Magnetospirillum magneticum AMB-1 AMB_RS23225 GGDEF domain-containing protein insig. 25 69
  Alteromonas macleodii MIT1002 MIT1002_00145 Cyclic di-GMP phosphodiesterase Gmr cofit 23 63
  Pseudomonas stutzeri RCH2 Psest_3777 diguanylate cyclase (GGDEF) domain sig. 26 63