Homologs of PP_4244 from Pseudomonas putida KT2440

alternative sigma factor
SEED: Sigma factor PvdS, controling pyoverdin biosynthesis
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas putida KT2440 PP_4244 alternative sigma factor sig. 100 100
o Pseudomonas sp. BP01 JOY50_RS00025 RNA polymerase factor sigma-70 insig. 95 100
o Pseudomonas sp. SVBP6 COO64_RS18740 RNA polymerase factor sigma-70 cofit 90 100
o Pseudomonas aeruginosa MRSN321 DY961_RS18585 pvdS;inference=COORDINATES pyoverdine signaling pathway sigma factor PvdS insig. 85 100
o Pseudomonas aeruginosa PA14 IKLFDK_11920 pyoverdine signaling pathway sigma factor PvdS sig. 85 100
o Pseudomonas aeruginosa PUPa3 DQ20_RS59800 pvdS;inference=COORDINATES pyoverdine signaling pathway sigma factor PvdS insig. 85 100
o Pseudomonas sp. RS175 PFR28_01023 hypothetical protein sig. 84 100
o Pseudomonas fluorescens FW300-N2C3 AO356_02895 RNA polymerase subunit sigma-70 strong 85 98
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_216 Sigma factor PvdS, controling pyoverdin biosynthesis insig. 83 100
o Pseudomonas fluorescens SBW25 PFLU_RS21525 RNA polymerase factor sigma-70 insig. 82 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS21525 RNA polymerase factor sigma-70 sig. 82 100
o Pseudomonas simiae WCS417 PS417_19555 RNA polymerase sigma70 strong 82 100
o Pseudomonas orientalis W4I3 QF045_RS21700 RNA polymerase factor sigma-70 no data 82 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04111 hypothetical protein insig. 82 100
o Pseudomonas sp. DMC3 GFF4554 hypothetical protein cofit 84 98
o Pseudomonas fluorescens FW300-N2E3 AO353_19345 RNA polymerase subunit sigma-70 insig. 80 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_2293 Sigma factor PvdS, controling pyoverdin biosynthesis insig. 81 100
o Pseudomonas syringae pv. syringae B728a Psyr_1943 Sigma-70 region 2 strong 80 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1943 Sigma-70 region 2 sig. 80 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2404 Sigma factor PvdS, controling pyoverdin biosynthesis sig. 85 88
o Azospirillum sp. SherDot2 MPMX19_03247 putative RNA polymerase sigma factor FecI insig. 57 91
o Azospirillum brasilense Sp245 AZOBR_RS23325 RNA polymerase sigma70 insig. 56 91
o Herbaspirillum seropedicae SmR1 HSERO_RS11705 extracytoplasmic-function sigma-70 factor insig. 48 93
o Pseudomonas sp. S08-1 OH686_01025 hypothetical protein insig. 42 86
  Burkholderia phytofirmans PsJN BPHYT_RS20215 RNA polymerase sigma 70 sig. 42 88
  Paraburkholderia sabiae LMG 24235 QEN71_RS15840 RNA polymerase factor sigma-70 sig. 40 91
o Variovorax sp. SCN45 GFF1645 Sigma factor PvdS, controling pyoverdin biosynthesis insig. 37 94
o Rhodospirillum rubrum S1H Rru_A2397 Sigma-24 (FecI) (NCBI) insig. 37 88
  Rhodospirillum rubrum S1H Rru_A0883 Sigma-24 (FecI) (NCBI) insig. 36 91
o Sphingobium sp. HT1-2 GFF5333 sigma factor cofit 37 89
o Variovorax sp. OAS795 ABID97_RS21515 sigma-70 family RNA polymerase sigma factor no data 34 84
  Azospirillum brasilense Sp245 AZOBR_RS27315 RNA polymerase sigma 70 insig. 33 90
o Sinorhizobium meliloti 1021 SMc04203 RNA polymerase sigma factor FECI protein insig. 34 86
  Pseudomonas stutzeri RCH2 Psest_0650 RNA polymerase sigma factor, sigma-70 family insig. 38 84
o Agrobacterium fabrum C58 Atu3387 sigma factor insig. 33 89
  Pseudomonas aeruginosa MRSN321 DY961_RS18835 RNA polymerase sigma factor sig. 32 83
  Pseudomonas aeruginosa PA14 IKLFDK_06170 RNA polymerase subunit sigma no data 32 83
  Pseudomonas aeruginosa PUPa3 DQ20_RS52975 RNA polymerase sigma factor insig. 32 83
  Azospirillum sp. SherDot2 MPMX19_03088 putative RNA polymerase sigma factor FecI insig. 32 90
  Sphingobium sp. HT1-2 GFF2715 sigma factor insig. 35 86
  Pseudomonas aeruginosa MRSN321 DY961_RS22365 RNA polymerase sigma factor insig. 33 86
  Pseudomonas aeruginosa PA14 IKLFDK_23065 RNA polymerase sigma factor sig. 33 86
  Pseudomonas aeruginosa PUPa3 DQ20_RS36960 RNA polymerase sigma factor insig. 33 86
  Pseudomonas sp. BP01 JOY50_RS01650 sigma-70 family RNA polymerase sigma factor insig. 28 93
  Pseudomonas sp. SVBP6 COO64_RS11395 RNA polymerase sigma factor insig. 31 91
  Pseudomonas stutzeri RCH2 Psest_4339 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog strong 32 86
  Pseudomonas fluorescens GW456-L13 PfGW456L13_3357 RNA polymerase sigma-70 factor, ECF subfamily insig. 34 74
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4951 FIG006045: Sigma factor, ECF subfamily insig. 32 90
  Pseudomonas fluorescens SBW25 PFLU_RS05190 RNA polymerase sigma factor insig. 32 90
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05190 RNA polymerase sigma factor insig. 32 90
  Pseudomonas sp. BP01 JOY50_RS17880 RNA polymerase sigma factor insig. 32 86
  Pseudomonas putida KT2440 PP_0352 RNA polymerase sigma-70 factor, ECF subfamily sig. 32 86
  Pseudomonas sp. BP01 JOY50_RS22945 sigma-70 family RNA polymerase sigma factor insig. 31 90
  Rhodospirillum rubrum S1H Rru_A1438 Sigma-24 (FecI) (NCBI) cofit 36 80
  Pseudomonas sp. DMC3 GFF2767 putative RNA polymerase sigma factor FecI insig. 34 83
  Pseudomonas simiae WCS417 PS417_05120 RNA polymerase subunit sigma-24 insig. 32 90
  Pseudomonas syringae pv. syringae B728a Psyr_1107 Sigma-70 region 2 insig. 33 89
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1107 Sigma-70 region 2 insig. 33 89
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01230 putative RNA polymerase sigma factor FecI insig. 32 90
  Pseudomonas simiae WCS417 PS417_15890 RNA polymerase sigma factor sig. 33 76
  Methylophilus sp. DMC18 GFF1078 hypothetical protein insig. 32 84
  Dechlorosoma suillum PS Dsui_2099 RNA polymerase sigma factor, sigma-70 family no data 31 75
  Dechlorosoma suillum PS Dsui_1673 RNA polymerase sigma factor, sigma-70 family no data 29 90
  Pseudomonas fluorescens SBW25 PFLU_RS17705 sigma-70 family RNA polymerase sigma factor insig. 33 74
  Pseudomonas fluorescens SBW25-INTG PFLU_RS17705 sigma-70 family RNA polymerase sigma factor sig. 33 74
  Pseudomonas orientalis W4I3 QF045_RS09635 RNA polymerase sigma factor insig. 32 78
  Pseudomonas sp. SVBP6 COO64_RS22780 RNA polymerase sigma factor insig. 32 86
  Pseudomonas fluorescens FW300-N2E3 AO353_04915 RNA polymerase subunit sigma-24 insig. 31 91
o Xanthobacter sp. DMC5 GFF2704 putative RNA polymerase sigma factor FecI insig. 31 86
  Pseudomonas orientalis W4I3 QF045_RS08105 RNA polymerase sigma factor insig. 31 90
  Agrobacterium fabrum C58 Atu3692 sigma factor sig. 30 77
  Cupriavidus basilensis FW507-4G11 RR42_RS31145 RNA polymerase sigma factor insig. 31 86
  Xanthobacter sp. DMC5 GFF2135 putative RNA polymerase sigma factor FecI insig. 35 76
  Pseudomonas sp. BP01 JOY50_RS02475 sigma-70 family RNA polymerase sigma factor no data 32 93
  Pseudomonas sp. BP01 JOY50_RS15495 RNA polymerase sigma factor insig. 29 93
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4581 RNA polymerase sigma-70 factor, ECF subfamily no data 32 74
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01536 hypothetical protein cofit 32 76
  Pseudomonas sp. RS175 PFR28_00037 putative RNA polymerase sigma factor FecI insig. 34 86
  Pseudomonas sp. BP01 JOY50_RS12755 sigma-70 family RNA polymerase sigma factor insig. 33 90
  Pseudomonas fluorescens FW300-N2C3 AO356_22495 RNA polymerase subunit sigma-24 insig. 31 87
  Azospirillum sp. SherDot2 MPMX19_03082 ECF RNA polymerase sigma factor SigE insig. 29 90
  Pseudomonas putida KT2440 PP_0704 RNA polymerase sigma-70 factor, ECF subfamily strong 35 77
  Pseudomonas lactucae CFBP13502 GEMAOFIL_05333 putative RNA polymerase sigma factor FecI insig. 31 86
  Pseudomonas sp. DMC3 GFF1893 putative RNA polymerase sigma factor FecI insig. 30 90
  Pseudomonas sp. SVBP6 COO64_RS12800 RNA polymerase sigma factor insig. 29 92
  Pseudomonas lactucae CFBP13502 GEMAOFIL_02135 putative RNA polymerase sigma factor FecI cofit 34 87
  Pseudomonas sp. SVBP6 COO64_RS03795 RNA polymerase sigma factor insig. 29 90
  Pseudomonas sp. RS175 PFR28_02859 putative RNA polymerase sigma factor FecI insig. 32 89
  Pseudomonas simiae WCS417 PS417_16255 RNA polymerase sigma factor sig. 35 77
  Pseudomonas putida KT2440 PP_0865 ECF subfamily RNA polymerase sigma-24 factor insig. 34 88
  Pseudomonas simiae WCS417 PS417_26065 RNA polymerase sigma factor insig. 30 86
  Pseudomonas aeruginosa MRSN321 DY961_RS27025 RNA polymerase sigma factor insig. 30 90
  Pseudomonas aeruginosa PUPa3 DQ20_RS31565 RNA polymerase sigma factor sig. 30 90
  Azospirillum brasilense Sp245 AZOBR_RS26615 RNA polymerase insig. 31 89
  Pseudomonas syringae pv. syringae B728a Psyr_4731 Sigma-70 region 2:Sigma-70 region 4 insig. 31 86
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4731 Sigma-70 region 2:Sigma-70 region 4 insig. 31 86
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_398 FIG006045: Sigma factor, ECF subfamily insig. 31 87
  Pseudomonas aeruginosa PA14 IKLFDK_24795 RNA polymerase sigma factor insig. 30 90
  Pseudomonas putida KT2440 PP_4608 RNA polymerase sigma-70 factor, ECF subfamily insig. 28 93
  Azospirillum brasilense Sp245 AZOBR_RS29160 putative RNA polymerase sigma-70 factor ECF subfamily insig. 28 97