| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Azospirillum sp. SherDot2 | MPMX19_06778 | | HTH-type transcriptional regulator YhaJ | insig. | 100 | 100 |
| o | Sphingobium sp. HT1-2 | GFF5049 | | Transcriptional regulator, LysR family | insig. | 77 | 100 |
| o | Sphingomonas koreensis DSMZ 15582 | Ga0059261_3906 | | Transcriptional regulator | insig. | 73 | 96 |
| o | Pseudomonas sp. RS175 | PFR28_01506 | | putative HTH-type transcriptional regulator YahB | insig. | 64 | 95 |
| o | Pseudomonas fluorescens GW456-L13 | PfGW456L13_3137 | | Transcriptional regulator, LysR family | insig. | 60 | 95 |
| o | Pseudomonas sp. DMC3 | GFF1218 | | putative HTH-type transcriptional regulator YahB | cofit | 61 | 95 |
| o | Pseudomonas fluorescens FW300-N2E3 | AO353_28560 | | LysR family transcriptional regulator | insig. | 59 | 97 |
| o | Cupriavidus basilensis FW507-4G11 | RR42_RS22310 | | LysR family transcriptional regulator | insig. | 61 | 95 |
| o | Sinorhizobium meliloti 1021 | SMa0353 | | LysR family transcriptional regulator | insig. | 58 | 95 |
| o | Caulobacter crescentus NA1000 | CCNA_00832 | | LysR-family transcriptional regulator | cofit | 60 | 95 |
| o | Caulobacter crescentus NA1000 Δfur | CCNA_00832 | | LysR-family transcriptional regulator | cofit | 60 | 95 |
| o | Agrobacterium fabrum C58 | Atu1209 | | transcriptional regulator, LysR family | sig. | 46 | 93 |
| o | Rhizobium sp. OAE497 | ABIE40_RS08235 | | LysR family transcriptional regulator | insig. | 44 | 94 |
| o | Herbaspirillum seropedicae SmR1 | HSERO_RS12670 | | LysR family transcriptional regulator | insig. | 50 | 94 |
| o | Enterobacter sp. TBS_079 | MPMX20_02550 | | HTH-type transcriptional regulator YhaJ | insig. | 48 | 93 |
| o | Ralstonia solanacearum PSI07 | RPSI07_RS02410 | | LysR family transcriptional regulator | insig. | 46 | 93 |
| o | Dickeya dadantii 3937 | DDA3937_RS14890 | | LysR family transcriptional regulator | insig. | 45 | 93 |
| o | Rhodopseudomonas palustris CGA009 | TX73_022195 | | LysR family transcriptional regulator | insig. | 46 | 92 |
| | Sinorhizobium meliloti 1021 | SMa0355 | | LysR family transcriptional regulator | insig. | 55 | 46 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02509 | | DNA-binding transcriptional regulator, LysR family | insig. | 39 | 82 |
| o | Pseudomonas stutzeri RCH2 | Psest_2565 | | Transcriptional regulator | sig. | 40 | 91 |
| o | Burkholderia phytofirmans PsJN | BPHYT_RS29085 | | LysR family transcriptional regulator | insig. | 38 | 82 |
| o | Rhodanobacter denitrificans MT42 | LRK55_RS14075 | | LysR family transcriptional regulator | insig. | 35 | 92 |
| o | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS14355 | | LysR family transcriptional regulator | insig. | 36 | 82 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_12995 | | LysR family transcriptional regulator | strong | 35 | 93 |
| o | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_1450 | | LysR family transcriptional regulator PA4989 | insig. | 33 | 93 |
| o | Pseudomonas fluorescens FW300-N2C3 | AO356_08825 | | LysR family transcriptional regulator | sig. | 35 | 94 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS03280 | | LysR family transcriptional regulator | strong | 36 | 91 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_190 | | LysR family transcriptional regulator PA4989 | insig. | 34 | 93 |
| | Pseudomonas sp. RS175 | PFR28_05088 | | HTH-type transcriptional regulator YhaJ | insig. | 34 | 94 |
| o | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3647 | | LysR family transcriptional regulator PA4989 | strong | 35 | 94 |
| o | Pseudomonas sp. SVBP6 | COO64_RS17740 | | LysR family transcriptional regulator | insig. | 34 | 93 |
| | Pseudomonas sp. DMC3 | GFF3180 | | HTH-type transcriptional regulator HdfR | cofit | 31 | 93 |
| | Sinorhizobium meliloti 1021 | SM_b22015 | | LysR family transcriptional regulator | insig. | 55 | 44 |
| | Pseudomonas sp. DMC3 | GFF1085 | | putative HTH-type transcriptional regulator YahB | cofit | 30 | 97 |
| o | Pseudomonas sp. BP01 | JOY50_RS10050 | | LysR family transcriptional regulator | insig. | 34 | 93 |
| o | Pseudomonas segetis P6 | MPMX49_04187 | | HTH-type transcriptional regulator YhaJ | insig. | 33 | 93 |
| o | Pseudomonas aeruginosa MRSN321 | DY961_RS10745 | | LysR family transcriptional regulator | insig. | 32 | 93 |
| o | Pseudomonas aeruginosa PA14 | IKLFDK_28590 | | LysR family transcriptional regulator | insig. | 32 | 93 |
| o | Pseudomonas aeruginosa PUPa3 | DQ20_RS51315 | | LysR family transcriptional regulator | insig. | 32 | 93 |
| | Pseudomonas segetis P6 | MPMX49_00479 | | HTH-type transcriptional regulator ArgP | insig. | 31 | 96 |
| | Sinorhizobium meliloti 1021 | SMa1782 | | LysR family transcriptional regulator | insig. | 34 | 93 |
| o | Pseudomonas putida KT2440 | PP_4929 | | Transcriptional regulator, LysR family | insig. | 33 | 93 |
| o | Desulfovibrio vulgaris Hildenborough JW710 | DVU0309 | | transcriptional regulator, LysR family (TIGR) | insig. | 34 | 93 |
| o | Castellaniella sp019104865 MT123 | ABCV34_RS09070 | | LysR family transcriptional regulator | insig. | 34 | 93 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_28710 | | LysR family transcriptional regulator | insig. | 34 | 82 |
| o | Pseudomonas lactucae CFBP13502 | GEMAOFIL_00705 | | HTH-type transcriptional regulator HdfR | cofit | 31 | 94 |
| o | Pseudomonas simiae WCS417 | PS417_02340 | | LysR family transcriptional regulator | strong | 31 | 93 |
| o | Variovorax sp. OAS795 | ABID97_RS03460 | | LysR family transcriptional regulator | insig. | 35 | 95 |
| o | Variovorax sp. SCN45 | GFF6397 | | LysR family transcriptional regulator PA2758 | insig. | 36 | 96 |
| o | Shewanella loihica PV-4 | Shew_1149 | | LysR family transcriptional regulator (RefSeq) | cofit | 33 | 82 |
| o | Pseudomonas fluorescens SBW25 | PFLU_RS02415 | | LysR family transcriptional regulator | insig. | 30 | 93 |
| o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS02415 | | LysR family transcriptional regulator | insig. | 30 | 93 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS14965 | | LysR family transcriptional regulator | insig. | 31 | 94 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS14965 | | LysR family transcriptional regulator | sig. | 31 | 94 |
| o | Pseudomonas orientalis W4I3 | QF045_RS05400 | | LysR family transcriptional regulator | cofit | 31 | 93 |
| o | Shewanella sp. ANA-3 | Shewana3_4390 | | LysR family transcriptional regulator (RefSeq) | insig. | 32 | 92 |
| | Pseudomonas simiae WCS417 | PS417_21935 | | transcriptional regulator | insig. | 30 | 93 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_03130 | | HTH-type transcriptional regulator YhaJ | cofit | 31 | 94 |
| | Pseudomonas sp. BP01 | JOY50_RS07140 | | LysR family transcriptional regulator | insig. | 33 | 89 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_13925 | | LysR family transcriptional regulator | sig. | 34 | 92 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS03340 | | LysR family transcriptional regulator | insig. | 34 | 92 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS32295 | | LysR family transcriptional regulator | insig. | 34 | 92 |
| o | Pseudomonas syringae pv. syringae B728a | Psyr_3825 | | transcriptional regulator, LysR family | insig. | 32 | 92 |
| o | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3825 | | transcriptional regulator, LysR family | insig. | 32 | 92 |
| | Pseudomonas orientalis W4I3 | QF045_RS22425 | | LysR family transcriptional regulator | insig. | 32 | 92 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS22220 | | LysR family transcriptional regulator | insig. | 33 | 92 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS22220 | | LysR family transcriptional regulator | sig. | 33 | 92 |
| | Sinorhizobium meliloti 1021 | SMa1933 | | LysR family transcriptional regulator | insig. | 41 | 58 |
| | Pseudomonas simiae WCS417 | PS417_20525 | | LysR family transcriptional regulator | insig. | 33 | 92 |
| | Pseudomonas putida KT2440 | PP_4156 | | Transcriptional regulator, LysR family | insig. | 32 | 89 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04255 | | HTH-type transcriptional regulator YhaJ | cofit | 32 | 92 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_23030 | | LysR family transcriptional regulator | insig. | 32 | 92 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_4458 | | Transcriptional regulator, LysR family | insig. | 31 | 92 |
| | Pseudomonas sp. DMC3 | GFF5269 | | HTH-type transcriptional regulator YhaJ | cofit | 31 | 89 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_18280 | | LysR family transcriptional regulator | sig. | 31 | 92 |
| | Pseudomonas sp. DMC3 | GFF2350 | | HTH-type transcriptional regulator YhaJ | insig. | 31 | 92 |
| o | Dechlorosoma suillum PS | Dsui_1258 | | transcriptional regulator | insig. | 32 | 93 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS22400 | | LysR family transcriptional regulator | insig. | 32 | 92 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS36925 | | LysR family transcriptional regulator | insig. | 32 | 92 |
| | Pseudomonas sp. RS175 | PFR28_00748 | | HTH-type transcriptional regulator YhaJ | sig. | 31 | 92 |
| o | Ralstonia sp. UNC404CL21Col | ABZR87_RS15530 | | LysR substrate-binding domain-containing protein | insig. | 32 | 91 |
| | Pseudomonas segetis P6 | MPMX49_03254 | | HTH-type transcriptional regulator YhaJ | sig. | 31 | 92 |
| | Pseudomonas sp. SVBP6 | COO64_RS21955 | | LysR family transcriptional regulator | insig. | 32 | 92 |
| | Pseudomonas orientalis W4I3 | QF045_RS24045 | | LysR family transcriptional regulator | insig. | 29 | 93 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_04235 | | LysR family transcriptional regulator | insig. | 32 | 92 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_2682 | | Transcriptional regulator, LysR family | insig. | 32 | 92 |
| | Variovorax sp. OAS795 | ABID97_RS29065 | | LysR family transcriptional regulator | no data | 31 | 91 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS21225 | | LysR family transcriptional regulator | insig. | 31 | 91 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS00790 | | LysR family transcriptional regulator | insig. | 30 | 92 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_16420 | | LysR family transcriptional regulator | sig. | 30 | 92 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS40250 | | LysR family transcriptional regulator | sig. | 30 | 92 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_548 | | Transcriptional regulator, LysR family | insig. | 31 | 92 |
| | Shewanella loihica PV-4 | Shew_3798 | | LysR family transcriptional regulator (RefSeq) | insig. | 25 | 92 |
| o | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF2844 | | LysR family transcriptional regulator PA2758 | insig. | 33 | 94 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS22625 | | LysR family transcriptional regulator | insig. | 32 | 95 |
| o | Rahnella sp. WP5 | EX31_RS10990 | | LysR family transcriptional regulator | insig. | 33 | 83 |
| o | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS14560 | | LysR substrate-binding domain-containing protein | insig. | 32 | 87 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3400 | | LysR-family transcriptional regulator STM3020 | no data | 29 | 93 |
| | Pseudomonas sp. BP01 | JOY50_RS01260 | | LysR family transcriptional regulator | insig. | 31 | 92 |