| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Azospirillum sp. SherDot2 | MPMX19_01957 | | Sensor histidine kinase RcsC | insig. | 100 | 100 |
| | Azospirillum brasilense Sp245 | AZOBR_RS14285 | | transcriptional regulator | strong | 44 | 82 |
| | Azospirillum sp. SherDot2 | MPMX19_01958 | | Protein-glutamate methylesterase/protein-glutamine glutaminase | insig. | 42 | 96 |
| | Azospirillum brasilense Sp245 | AZOBR_RS12605 | | regulator | insig. | 39 | 89 |
| | Azospirillum sp. SherDot2 | MPMX19_00501 | | Protein-glutamate methylesterase/protein-glutamine glutaminase | insig. | 39 | 78 |
| | Azospirillum brasilense Sp245 | AZOBR_RS14305 | | transcriptional regulator | cofit | 41 | 79 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS13380 | | fused response regulator/phosphatase | insig. | 37 | 88 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS18385 | | transcriptional regulator | insig. | 38 | 76 |
| | Azospirillum sp. SherDot2 | MPMX19_01262 | | hypothetical protein | insig. | 38 | 78 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS05675 | | Serine phosphatase RsbU regulator sigma subunit | insig. | 30 | 88 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c34880 | | putative response regulator | strong | 28 | 82 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF4462 | | Serine phosphatase RsbU, regulator of sigma subunit | insig. | 29 | 91 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS17900 | | serine phosphatase | insig. | 31 | 67 |
| | Pseudomonas segetis P6 | ACVTMO_RS09490 | rssB | two-component system response regulator RssB | no data | 30 | 77 |
| | Pseudomonas sp. S08-1 | OH686_22730 | | Serine phosphatase RsbU, regulator of sigma subunit | no data | 27 | 89 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS08635 | | response regulator | sig. | 48 | 28 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_14160 | | fused response regulator/phosphatase | no data | 27 | 89 |
| | Alteromonas macleodii MIT1002 | MIT1002_01320 | | Alkaline phosphatase synthesis transcriptional regulatory protein PhoP | cofit | 32 | 56 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS03060 | | SpoIIE family protein phosphatase | no data | 27 | 89 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS32530 | rssB;go_process=phosphorelay | two-component system response regulator RssB | no data | 27 | 89 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_03275 | | hybrid sensor histidine kinase/response regulator | insig. | 40 | 36 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_1912 | | Response regulator receiver:Stage II sporulation E | no data | 28 | 77 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_1912 | | Response regulator receiver:Stage II sporulation E | no data | 28 | 77 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_1146 | | Serine phosphatase RsbU, regulator of sigma subunit | insig. | 27 | 79 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS30905 | | histidine kinase | insig. | 38 | 40 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3485 | | response regulator receiver modulated serine phosphatase (RefSeq) | sig. | 28 | 78 |
| | Pseudomonas stutzeri RCH2 | Psest_2710 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | no data | 29 | 77 |
| | Pseudomonas segetis P6 | ACVTMO_RS02300 | | response regulator | insig. | 44 | 32 |
| | Azospirillum brasilense Sp245 | AZOBR_RS16180 | | diguanylate cyclase | strong | 46 | 27 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_181 | | Two-component response regulator | insig. | 44 | 29 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS06810 | | response regulator | insig. | 42 | 29 |
| | Dechlorosoma suillum PS | Dsui_3468 | | Response regulator receiver domain protein,histidine kinase | cofit | 38 | 38 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS15245 | | response regulator | insig. | 32 | 45 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1097 | | response regulator receiver modulated metal dependent phosphohydrolase (RefSeq) | insig. | 42 | 35 |
| | Agrobacterium fabrum C58 | Atu1297 | | two component response regulator | insig. | 47 | 27 |
| | Pseudomonas sp. BP01 | JOY50_RS25185 | rssB | two-component system response regulator RssB | no data | 30 | 77 |
| | Pseudomonas sp. S08-1 | OH686_16560 | | Two-component transcriptional response regulator, LuxR family | insig. | 46 | 31 |
| | Azospirillum sp. SherDot2 | MPMX19_02025 | | Protein-glutamate methylesterase/protein-glutamine glutaminase | insig. | 44 | 28 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS32075 | | response regulator | insig. | 41 | 34 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS03320 | | EAL domain-containing protein | insig. | 34 | 32 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS20605 | | response regulator | insig. | 32 | 45 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS12370 | | response regulator transcription factor | insig. | 43 | 29 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS12370 | | response regulator transcription factor | insig. | 43 | 29 |
| | Pseudomonas simiae WCS417 | PS417_11585 | | LuxR family transcriptional regulator | insig. | 43 | 29 |
| | Dechlorosoma suillum PS | Dsui_1715 | | response regulator with CheY-like receiver domain and winged-helix DNA-binding domain | cofit | 30 | 79 |
| | Pseudomonas sp. DMC3 | GFF1302 | | Regulator of RpoS | no data | 26 | 88 |
| | Alteromonas macleodii MIT1002 | MIT1002_00763 | | Cyclic di-GMP phosphodiesterase response regulator RpfG | insig. | 43 | 28 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS10415 | | SpoIIE family protein phosphatase | insig. | 23 | 98 |
| | Dinoroseobacter shibae DFL-12 | Dshi_2820 | | response regulator receiver modulated diguanylate cyclase (RefSeq) | sig. | 46 | 27 |
| | Pseudomonas sp. SVBP6 | COO64_RS09545 | rssB | two-component system response regulator RssB | no data | 29 | 77 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_60 | | Serine phosphatase RsbU, regulator of sigma subunit | no data | 27 | 88 |
| | Azospirillum brasilense Sp245 | AZOBR_RS00555 | | chemotaxis protein CheY | insig. | 46 | 27 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_4011 | | Serine phosphatase RsbU, regulator of sigma subunit | no data | 27 | 88 |
| | Pseudomonas sp. RS175 | PFR28_01140 | | Regulator of RpoS | no data | 26 | 88 |
| | Pseudomonas putida KT2440 | PP_2165 | | Response regulator | no data | 29 | 77 |
| | Azospirillum sp. SherDot2 | MPMX19_01522 | | Response regulator PleD | insig. | 46 | 27 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_2260 | | Serine phosphatase RsbU, regulator of sigma subunit | no data | 26 | 88 |
| | Rhizobium sp. OAE497 | ABIE40_RS07330 | | PleD family two-component system response regulator | cofit | 43 | 30 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_3644 | | Pole remodelling regulatory diguanylate cyclase | insig. | 44 | 30 |
| | Shewanella sp. ANA-3 | Shewana3_3418 | | response regulator receiver modulated metal dependent phosphohydrolase (RefSeq) | insig. | 43 | 28 |
| | Shewanella amazonensis SB2B | Sama_3111 | | response regulator receiver protein (RefSeq) | insig. | 40 | 31 |
| | Dechlorosoma suillum PS | Dsui_0919 | | response regulator containing a CheY-like receiver domain and an HD-GYP domain | insig. | 39 | 40 |
| | Caulobacter crescentus NA1000 | CCNA_02546 | | GGDEF/response regulator protein PleD | strong | 46 | 27 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_02546 | | GGDEF/response regulator protein PleD | cofit | 46 | 27 |
| | Azospirillum brasilense Sp245 | AZOBR_RS03050 | | diguanylate cyclase | sig. | 43 | 28 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_04086 | | response regulator receiver domain protein | insig. | 40 | 28 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01676 | | Regulator of RpoS | no data | 26 | 88 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_03092 | | Protein-glutamate methylesterase/protein-glutamine glutaminase | cofit | 38 | 34 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_02185 | | chemotaxis protein CheY | no data | 26 | 88 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_2270 | | Pole remodelling regulatory diguanylate cyclase | insig. | 42 | 29 |
| | Alteromonas macleodii MIT1002 | MIT1002_01768 | | Cyclic di-GMP phosphodiesterase response regulator RpfG | insig. | 38 | 31 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_00320 | | chemotaxis protein CheY | no data | 26 | 88 |
| | Rhodopseudomonas palustris CGA009 | TX73_016195 | | PleD family two-component system response regulator | insig. | 46 | 27 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS20960 | | two-component system response regulator | cofit | 41 | 33 |
| | Azospirillum brasilense Sp245 | AZOBR_RS22690 | | sensor protein | insig. | 37 | 45 |
| | Variovorax sp. OAS795 | ABID97_RS23505 | | response regulator transcription factor | insig. | 44 | 28 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS15265 | | EAL domain-containing response regulator | insig. | 44 | 27 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS15265 | | EAL domain-containing response regulator | insig. | 44 | 27 |
| | Dechlorosoma suillum PS | Dsui_3334 | | PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein | cofit | 40 | 35 |
| | Rhodopseudomonas palustris CGA009 | TX73_006410 | | response regulator transcription factor | insig. | 42 | 28 |
| | Sinorhizobium meliloti 1021 | SMc01370 | | response regulator PleD | insig. | 47 | 27 |
| | Pseudomonas orientalis W4I3 | QF045_RS16400 | | EAL domain-containing response regulator | insig. | 45 | 27 |
| | Marinobacter adhaerens HP15 | HP15_1054 | | multi-sensor signal transduction histidine kinase | strong | 39 | 30 |
| | Dinoroseobacter shibae DFL-12 | Dshi_1538 | | two component transcriptional regulator, winged helix family (RefSeq) | no data | 43 | 28 |
| | Shewanella oneidensis MR-1 | SO0860 | | response regulator (NCBI ptt file) | insig. | 42 | 28 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS02130 | | hybrid sensor histidine kinase/response regulator | strong | 38 | 30 |
| | Pseudomonas orientalis W4I3 | QF045_RS10365 | | SpoIIE family protein phosphatase | no data | 26 | 88 |
| | Pseudomonas sp. S08-1 | OH686_00410 | | Response regulator c-di-GMP phosphodiesterase, RpfG family | insig. | 40 | 32 |
| | Alteromonas macleodii MIT1002 | MIT1002_01584 | | Stalked cell differentiation-controlling protein | insig. | 36 | 31 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS00130 | hsbR;inference=COORDINATES | two-component system response regulator HsbR | sig. | 29 | 90 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_17155 | | two-component system response regulator HsbR | sig. | 29 | 90 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS40880 | hsbR;inference=COORDINATES | two-component system response regulator HsbR | insig. | 29 | 90 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS07795 | | SpoIIE family protein phosphatase | no data | 26 | 88 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS07795 | | SpoIIE family protein phosphatase | no data | 26 | 88 |
| | Pseudomonas simiae WCS417 | PS417_07720 | | chemotaxis protein CheY | no data | 26 | 88 |
| | Variovorax sp. SCN45 | GFF2488 | | Two-component transcriptional response regulator, LuxR family | insig. | 43 | 28 |
| | Sphingobium sp. HT1-2 | GFF2748 | | Pole remodelling regulatory diguanylate cyclase | cofit | 42 | 28 |
| | Dechlorosoma suillum PS | Dsui_0777 | | response regulator containing a CheY-like receiver domain and an HD-GYP domain | cofit | 40 | 39 |
| | Rhodospirillum rubrum S1H | Rru_A0603 | | Two component Transcriptional regulator, Winged helix family (NCBI) | cofit | 43 | 30 |
| | Methylophilus sp. DMC18 | GFF1954 | | Protein-glutamate methylesterase/protein-glutamine glutaminase | cofit | 40 | 28 |