Homologs of MIT1002_03872 from Alteromonas macleodii MIT1002

RNA polymerase sigma factor SigM
SEED: sigma-70 like sigma-factor
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Alteromonas macleodii MIT1002 MIT1002_03872 RNA polymerase sigma factor SigM insig. 100 100
o Cupriavidus basilensis FW507-4G11 RR42_RS32410 RNA polymerase subunit sigma-24 no data 40 94
o Sinorhizobium meliloti 1021 SMa0143 RNA polymerase ECF sigma factor insig. 38 93
o Pseudomonas fluorescens GW456-L13 PfGW456L13_2582 RNA polymerase sigma-54 factor RpoN insig. 35 97
o Pseudomonas fluorescens SBW25 PFLU_RS19010 sigma-70 family RNA polymerase sigma factor insig. 35 97
o Pseudomonas fluorescens SBW25-INTG PFLU_RS19010 sigma-70 family RNA polymerase sigma factor sig. 35 97
o Paraburkholderia graminis OAS925 ABIE53_006215 RNA polymerase sigma-70 factor (ECF subfamily) insig. 36 96
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06547 RNA polymerase sigma-70 factor, ECF subfamily insig. 36 96
o Burkholderia phytofirmans PsJN BPHYT_RS24740 RNA polymerase subunit sigma-24 sig. 36 96
o Pseudomonas simiae WCS417 PS417_17070 RNA polymerase subunit sigma-24 insig. 35 97
o Rhodopseudomonas palustris CGA009 TX73_021900 sigma-70 family RNA polymerase sigma factor strong 40 95
  Paraburkholderia graminis OAS925 ABIE53_003919 RNA polymerase sigma-70 factor (ECF subfamily) insig. 38 91
o Paraburkholderia sabiae LMG 24235 QEN71_RS00095 RNA polymerase sigma factor insig. 34 96
o Magnetospirillum magneticum AMB-1 AMB_RS13315 hypothetical protein insig. 36 95
o Pseudomonas fluorescens FW300-N2E3 AO353_20305 RNA polymerase subunit sigma-24 no data 36 97
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05041 RNA polymerase sigma-70 factor, ECF subfamily insig. 36 96
o Azospirillum brasilense Sp245 AZOBR_RS06360 RNA polymerase subunit sigma-24 no data 35 92
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3977 RNA polymerase sigma-54 factor RpoN insig. 36 97
o Phaeobacter inhibens DSM 17395 PGA1_78p00070 'RNA polymerase sigma-70, ECF subfamily; ECF26 subgroup' no data 40 98
o Agrobacterium fabrum C58 Atu1485 ECF family sigma factor insig. 36 93
  Azospirillum brasilense Sp245 AZOBR_RS23735 RNA polymerase no data 37 91
o Pseudomonas fluorescens FW300-N2C3 AO356_01625 RNA polymerase subunit sigma-24 insig. 36 97
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2200 RNA polymerase sigma-54 factor RpoN sig. 36 96
  Paraburkholderia graminis OAS925 ABIE53_003943 RNA polymerase sigma-70 factor (ECF subfamily) sig. 34 93
o Variovorax sp. SCN45 GFF215 RNA polymerase sigma-54 factor RpoN insig. 39 94
o Sphingomonas koreensis DSMZ 15582 Ga0059261_1191 RNA polymerase sigma factor, sigma-70 family insig. 39 91
o Variovorax sp. OAS795 ABID97_RS16445 sigma-70 family RNA polymerase sigma factor no data 37 94
o Azospirillum sp. SherDot2 MPMX19_00764 ECF RNA polymerase sigma factor EcfG insig. 35 89
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05124 RNA polymerase sigma-70 factor, ECF subfamily insig. 37 95
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF329 RNA polymerase sigma-54 factor RpoN insig. 37 98
o Bosea sp. OAE506 ABIE41_RS04095 sigma-70 family RNA polymerase sigma factor strong 36 96
  Paraburkholderia graminis OAS925 ABIE53_002425 RNA polymerase sigma-70 factor (ECF subfamily) insig. 36 95
o Pseudomonas sp. RS175 PFR28_01251 ECF RNA polymerase sigma factor EcfG insig. 34 97
  Burkholderia phytofirmans PsJN BPHYT_RS08240 RNA polymerase subunit sigma-24 sig. 36 93
  Paraburkholderia sabiae LMG 24235 QEN71_RS23005 sigma-70 family RNA polymerase sigma factor insig. 38 94
  Paraburkholderia sabiae LMG 24235 QEN71_RS32245 RNA polymerase sigma factor insig. 33 98
o Kangiella aquimarina DSM 16071 B158DRAFT_0015 RNA polymerase sigma factor, sigma-70 family insig. 37 95
  Paraburkholderia sabiae LMG 24235 QEN71_RS36705 RNA polymerase sigma factor insig. 35 95
  Sinorhizobium meliloti 1021 SMc02713 RNA polymerase sigma-E factor (sigma-24) protein strong 34 98
o Rhizobium sp. OAE497 ABIE40_RS22730 RNA polymerase sigma factor insig. 30 95
o Dinoroseobacter shibae DFL-12 Dshi_3835 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 35 95
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS02635 RNA polymerase sigma factor insig. 35 93
  Azospirillum brasilense Sp245 AZOBR_RS10625 RNA polymerase sigma-70 factor insig. 33 93
  Rhizobium sp. OAE497 ABIE40_RS14450 RNA polymerase sigma factor insig. 32 99
o Rhodanobacter denitrificans MT42 LRK55_RS00300 RNA polymerase sigma factor insig. 40 84
o Pseudomonas putida KT2440 PP_2888 putative ECF sigma factor PrtI no data 36 93
  Phaeobacter inhibens DSM 17395 PGA1_c27070 RNA polymerase sigma factor 70 (ECF15 subgroup, ECF26 subgroup) insig. 33 95
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05043 RNA polymerase sigma-70 factor, ECF subfamily no data 32 93
  Sinorhizobium meliloti 1021 SMc01419 RNA polymerase sigma factor protein sig. 30 98
  Cupriavidus basilensis FW507-4G11 RR42_RS19070 DNA-directed RNA polymerase sigma-70 factor insig. 33 95
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3853 RNA polymerase sigma factor, sigma-70 family insig. 33 96
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3492 RNA polymerase sigma factor, sigma-70 family strong 32 95
  Sinorhizobium meliloti 1021 SM_b21484 RNA polymerase sigma-E factor (sigma-24) protein insig. 33 96
o Rhodanobacter sp. FW510-T8 OKGIIK_06725 rpoE RNA polymerase subunit sigma-70 insig. 40 84
  Rhizobium sp. OAE497 ABIE40_RS20320 sigma-70 family RNA polymerase sigma factor insig. 33 88
  Azospirillum sp. SherDot2 MPMX19_00923 hypothetical protein insig. 33 93
  Caulobacter crescentus NA1000 CCNA_03589 RNA polymerase EcfG family sigma factor sigT strong 33 95
  Caulobacter crescentus NA1000 Δfur CCNA_03589 RNA polymerase EcfG family sigma factor sigT cofit 33 95
o Herbaspirillum seropedicae SmR1 HSERO_RS13530 RNA polymerase subunit sigma-24 no data 35 93
  Agrobacterium fabrum C58 Atu4160 RNA polymerase sigma factor strong 30 98
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3411 RNA polymerase sigma factor, sigma-70 family insig. 30 90
  Rhizobium sp. OAE497 ABIE40_RS27415 sigma-70 family RNA polymerase sigma factor insig. 33 96
  Sinorhizobium meliloti 1021 SMc01506 RNA polymerase sigma factor strong 31 98
  Azospirillum sp. SherDot2 MPMX19_01371 hypothetical protein insig. 30 96
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0287 RNA polymerase sigma factor, sigma-70 family strong 28 89
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS00565 RNA polymerase sigma factor insig. 38 76
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS14775 sigma-70 family RNA polymerase sigma factor strong 34 91
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4350 RNA polymerase sigma-54 factor RpoN insig. 33 96
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_19215 RNA polymerase subunit sigma sig. 30 89
o Rahnella sp. WP5 EX31_RS05375 sigma-70 family RNA polymerase sigma factor insig. 33 91
o Pectobacterium carotovorum WPP14 HER17_RS09715 sigma-70 family RNA polymerase sigma factor cofit 31 94
  Caulobacter crescentus NA1000 CCNA_02977 RNA polymerase ECF-type sigma factor sigU strong 35 93
  Caulobacter crescentus NA1000 Δfur CCNA_02977 RNA polymerase ECF-type sigma factor sigU cofit 35 93
  Azospirillum brasilense Sp245 AZOBR_RS11020 RNA polymerase subunit sigma-70 no data 35 93
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01554 RNA polymerase sigma-70 factor, ECF subfamily insig. 31 89
o Dechlorosoma suillum PS Dsui_1302 RNA polymerase sigma factor, sigma-70 family cofit 32 94
  Azospirillum sp. SherDot2 MPMX19_01197 ECF RNA polymerase sigma factor EcfG insig. 30 95
  Sinorhizobium meliloti 1021 SMc04051 RNA polymerase sigma-E factor (sigma-24) protein insig. 32 92
o Ralstonia solanacearum PSI07 RPSI07_RS10230 RNA polymerase sigma factor no data 33 96
  Paraburkholderia sabiae LMG 24235 QEN71_RS22515 RNA polymerase sigma factor insig. 33 84
  Enterobacter asburiae PDN3 EX28DRAFT_2729 RNA polymerase sigma factor, sigma-70 family insig. 30 94
  Rhizobium sp. OAE497 ABIE40_RS11455 RNA polymerase sigma factor insig. 25 99
o Ralstonia solanacearum GMI1000 RS_RS14950 RNA polymerase sigma factor no data 33 96
o Pantoea sp. MT58 IAI47_21640 sigma-70 family RNA polymerase sigma factor insig. 33 87
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS07010 RNA polymerase sigma factor no data 32 96
o Ralstonia solanacearum UW163 UW163_RS06605 RNA polymerase sigma factor no data 32 96
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2959 RNA polymerase sigma-54 factor RpoN insig. 39 57
  Agrobacterium fabrum C58 Atu2030 ECF family sigma factor insig. 32 83
  Azospirillum brasilense Sp245 AZOBR_RS14755 RNA polymerase sigma-70 factor insig. 31 93
  Rhodospirillum rubrum S1H Rru_A3287 Sigma-24 (FecI) (NCBI) no data 32 93
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS24230 RNA polymerase sigma factor strong 28 95
o Dickeya dadantii 3937 DDA3937_RS11055 sigma-70 family RNA polymerase sigma factor insig. 32 91
o Dickeya dianthicola 67-19 HGI48_RS11075 sigma-70 family RNA polymerase sigma factor insig. 32 91
  Paraburkholderia graminis OAS925 ABIE53_002003 RNA polymerase sigma factor (sigma-70 family) sig. 31 85
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS23375 RNA polymerase sigma factor insig. 31 87
  Ralstonia solanacearum UW163 UW163_RS16625 RNA polymerase sigma factor insig. 31 87
  Mycobacterium tuberculosis H37Rv Rv3223c Alternative RNA polymerase sigma-E factor (sigma-24) SigH (RPOE) insig. 30 91
  Rhizobium sp. OAE497 ABIE40_RS03400 RNA polymerase sigma factor insig. 29 87
  Ralstonia sp. UNC404CL21Col ABZR87_RS23395 RNA polymerase sigma factor insig. 30 87
o Bacteroides ovatus ATCC 8483 BACOVA_04312 Sigma-70 region 2 insig. 29 88