Homologs of LRK53_RS06105 from Rhodanobacter sp000427505 FW510-R12

RNA polymerase sigma factor
SEED: RNA polymerase sigma-54 factor RpoN
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS06105 RNA polymerase sigma factor insig. 100 100
o Rhodanobacter sp. FW510-T8 OKGIIK_10685 rpoE RNA polymerase sigma factor sig. 90 100
o Rhodanobacter denitrificans MT42 LRK55_RS03585 RNA polymerase sigma factor strong 95 100
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS03835 RNA polymerase sigma factor strong 95 100
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS22130 RNA polymerase sigma factor insig. 79 100
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4203.1 RNA polymerase sigma-54 factor RpoN insig. 60 89
o Lysobacter sp. OAE881 ABIE51_RS05545 RNA polymerase sigma factor insig. 56 90
o Dechlorosoma suillum PS Dsui_3530 DNA-directed RNA polymerase specialized sigma subunit, sigma24 insig. 51 87
o Cupriavidus basilensis FW507-4G11 RR42_RS05430 DNA-directed RNA polymerase sigma-70 factor strong 46 87
o Methylophilus sp. DMC18 GFF2306 RNA polymerase sigma factor FliA insig. 45 87
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS03055 RNA polymerase sigma factor strong 44 85
o Ralstonia solanacearum UW163 UW163_RS10670 RNA polymerase sigma factor insig. 44 85
o Ralstonia solanacearum PSI07 RPSI07_RS14250 RNA polymerase sigma factor cofit 45 87
o Paraburkholderia sabiae LMG 24235 QEN71_RS24230 RNA polymerase sigma factor insig. 45 83
o Ralstonia sp. UNC404CL21Col ABZR87_RS14960 RNA polymerase sigma factor insig. 43 85
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04550 RNA polymerase, sigma-24 subunit, RpoE strong 45 86
o Variovorax sp. OAS795 ABID97_RS14880 RNA polymerase sigma factor cofit 44 89
o Herbaspirillum seropedicae SmR1 HSERO_RS08645 RNA polymerase sigma70 factor sig. 41 87
  Paraburkholderia graminis OAS925 ABIE53_001573 RNA polymerase sigma-70 factor (ECF subfamily) strong 44 86
o Burkholderia phytofirmans PsJN BPHYT_RS06540 RNA polymerase sigma70 factor strong 43 86
o Acidovorax sp. GW101-3H11 Ac3H11_524 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like cofit 43 89
o Ralstonia solanacearum GMI1000 RS_RS10425 RNA polymerase sigma factor cofit 42 87
o Variovorax sp. SCN45 GFF1157 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like insig. 43 89
  Acinetobacter radioresistens SK82 MPMX26_02199 hypothetical protein no data 37 87
o Acinetobacter baumannii LAC-4 RR41_RS04630 RNA polymerase sigma factor no data 36 87
  Lysobacter sp. OAE881 ABIE51_RS06950 RNA polymerase sigma factor strong 32 75
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09360 RNA polymerase sigma factor insig. 32 92
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0726 RNA polymerase sigma factor, sigma-70 family insig. 30 89
  Pseudomonas sp. SVBP6 COO64_RS16360 RNA polymerase sigma factor sig. 31 75
  Synechococcus elongatus PCC 7942 Synpcc7942_1923 sigG RNA polymerase sigma factor RpoE strong 35 76
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS15920 sigma-70 family RNA polymerase sigma factor insig. 31 76
o Pseudomonas sp. BP01 JOY50_RS02475 sigma-70 family RNA polymerase sigma factor no data 34 93
  Pseudomonas simiae WCS417 PS417_06880 RNA polymerase sigma factor insig. 30 75
  Pseudomonas orientalis W4I3 QF045_RS19140 sigma-70 family RNA polymerase sigma factor insig. 29 79
  Variovorax sp. SCN45 GFF4261 RNA polymerase ECF-type sigma factor insig. 32 72
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_133 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis insig. 29 79
  Pseudomonas sp. DMC3 GFF1893 putative RNA polymerase sigma factor FecI insig. 31 76
  Pseudomonas sp. DMC3 GFF759 putative RNA polymerase sigma factor FecI insig. 28 78
  Variovorax sp. SCN45 GFF7651 putative sigma factor no data 76 18
  Acidovorax sp. GW101-3H11 Ac3H11_916 RNA polymerase sigma-70 factor insig. 37 47
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2394 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 28 77
  Pseudomonas sp. RS175 PFR28_02867 putative RNA polymerase sigma factor FecI insig. 29 79
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS01445 sigma-70 family RNA polymerase sigma factor insig. 30 84
  Pseudomonas sp. BP01 JOY50_RS12990 sigma-70 family RNA polymerase sigma factor insig. 29 70
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS00640 sigma-70 family RNA polymerase sigma factor cofit 27 89
  Bacteroides ovatus ATCC 8483 BACOVA_01066 hypothetical protein insig. 27 76
  Pseudomonas aeruginosa MRSN321 DY961_RS15880 RNA polymerase sigma factor sig. 45 34
  Pseudomonas aeruginosa PA14 IKLFDK_17505 RNA polymerase subunit sigma-70 insig. 45 34
  Variovorax sp. OAS795 ABID97_RS28845 RNA polymerase sigma factor insig. 33 80
  Pseudomonas fluorescens SBW25 PFLU_RS05190 RNA polymerase sigma factor insig. 31 76
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05190 RNA polymerase sigma factor insig. 31 76
  Mycobacterium tuberculosis H37Rv Rv1221 Alternative RNA polymerase sigma factor SigE insig. 28 95
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_21 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis sig. 28 79
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS04645 sigma-70 family RNA polymerase sigma factor cofit 27 90
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09455 RNA polymerase sigma factor insig. 34 76
  Paraburkholderia graminis OAS925 ABIE53_003919 RNA polymerase sigma-70 factor (ECF subfamily) insig. 31 77
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1181 FIG006045: Sigma factor, ECF subfamily insig. 31 80
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05041 RNA polymerase sigma-70 factor, ECF subfamily insig. 32 91
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01538 RNA polymerase sigma-70 factor, ECF subfamily insig. 31 82
  Pseudomonas sp. BP01 JOY50_RS22705 RNA polymerase sigma factor insig. 30 78
  Pseudomonas simiae WCS417 PS417_05120 RNA polymerase subunit sigma-24 insig. 30 76
  Dechlorosoma suillum PS Dsui_2977 RNA polymerase sigma factor, sigma-70 family insig. 29 74
  Cupriavidus basilensis FW507-4G11 RR42_RS14080 RNA polymerase sigma factor RpoE strong 27 87
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09420 RNA polymerase sigma factor sig. 24 78
  Rhodopseudomonas palustris CGA009 TX73_023085 RNA polymerase sigma factor cofit 33 82
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01230 putative RNA polymerase sigma factor FecI insig. 30 76
  Pseudomonas aeruginosa PUPa3 DQ20_RS41200 RNA polymerase sigma factor insig. 44 34
  Variovorax sp. SCN45 GFF5806 RNA polymerase ECF-type sigma factor insig. 32 83
  Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 30 77
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS07040 RNA polymerase sigma factor insig. 31 65
  Paraburkholderia sabiae LMG 24235 QEN71_RS20845 sigma-70 family RNA polymerase sigma factor insig. 34 72
  Paraburkholderia graminis OAS925 ABIE53_003943 RNA polymerase sigma-70 factor (ECF subfamily) sig. 33 85
  Xanthobacter sp. DMC5 GFF1406 RNA polymerase sigma-H factor insig. 32 86
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS23375 RNA polymerase sigma factor insig. 31 79
  Ralstonia solanacearum UW163 UW163_RS16625 RNA polymerase sigma factor insig. 31 79
  Variovorax sp. SCN45 GFF1525 RNA polymerase ECF-type sigma factor insig. 28 77
  Pseudomonas fluorescens SBW25 PFLU_RS19420 sigma-70 family RNA polymerase sigma factor insig. 28 79
  Pseudomonas fluorescens SBW25-INTG PFLU_RS19420 sigma-70 family RNA polymerase sigma factor strong 28 79
  Cupriavidus basilensis FW507-4G11 RR42_RS05810 RNA polymerase sigma factor insig. 30 90
  Sphingobium sp. HT1-2 GFF3691 RNA polymerase ECF-type sigma factor cofit 31 87
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS05915 sigma-70 family RNA polymerase sigma factor insig. 29 80
  Pseudomonas fluorescens FW300-N2C3 AO356_21175 RNA polymerase subunit sigma strong 28 79
  Pseudomonas aeruginosa MRSN321 DY961_RS18835 RNA polymerase sigma factor sig. 38 39
  Pseudomonas aeruginosa PA14 IKLFDK_06170 RNA polymerase subunit sigma no data 38 39
  Pseudomonas aeruginosa PUPa3 DQ20_RS52975 RNA polymerase sigma factor insig. 38 39
  Pseudomonas fluorescens FW300-N2C3 AO356_21215 RNA polymerase subunit sigma-24 insig. 30 77
  Pseudomonas putida KT2440 PP_0865 ECF subfamily RNA polymerase sigma-24 factor insig. 30 78
  Paraburkholderia graminis OAS925 ABIE53_005146 RNA polymerase sigma factor (sigma-70 family) sig. 28 88
  Variovorax sp. SCN45 GFF4544 RNA polymerase sigma factor RpoE insig. 41 44
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09390 sigma-70 family RNA polymerase sigma factor insig. 28 74
  Pseudomonas orientalis W4I3 QF045_RS09635 RNA polymerase sigma factor insig. 29 75
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2751 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 25 78
  Phocaeicola dorei CL03T12C01 ABI39_RS18175 sigma-70 family RNA polymerase sigma factor sig. 29 80
  Sphingobium sp. HT1-2 GFF5276 RNA polymerase, sigma-24 subunit, ECF subfamily cofit 46 28
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3853 RNA polymerase sigma factor, sigma-70 family insig. 33 78
  Azospirillum sp. SherDot2 MPMX19_03082 ECF RNA polymerase sigma factor SigE insig. 32 96
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02732 RNA polymerase sigma-70 factor, ECF subfamily insig. 29 91
  Escherichia coli BL21 ECD_04159 RNA polymerase sigma-19 factor, fec operon-specific; ECF sigma factor insig. 27 75
  Escherichia coli ECOR38 HEPCGN_09830 fecI RNA polymerase sigma factor FecI insig. 27 75
  Escherichia coli Nissle 1917 ECOLIN_RS25750 RNA polymerase sigma factor FecI insig. 27 75