Homologs of GFF4182 from Variovorax sp. SCN45

Extracytoplasmic function (ECF) sigma factor VreI
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Variovorax sp. SCN45 GFF4182 Extracytoplasmic function (ECF) sigma factor VreI insig. 100 100
  Variovorax sp. SCN45 GFF791 RNA polymerase sigma factor RpoE insig. 50 97
  Cupriavidus basilensis FW507-4G11 RR42_RS14885 DNA-directed RNA polymerase sigma-70 factor insig. 49 87
  Variovorax sp. SCN45 GFF1723 Extracytoplasmic function (ECF) sigma factor VreI no data 46 89
  Variovorax sp. SCN45 GFF99 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 41 97
  Variovorax sp. SCN45 GFF784 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 41 91
  Variovorax sp. SCN45 GFF6854 RNA polymerase ECF-type sigma factor insig. 42 85
  Variovorax sp. SCN45 GFF4185 RNA polymerase ECF-type sigma factor insig. 40 89
  Rhodopseudomonas palustris CGA009 TX73_006880 sigma-70 family RNA polymerase sigma factor insig. 41 84
  Variovorax sp. SCN45 GFF794 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 39 85
  Pseudomonas fluorescens SBW25 PFLU_RS11840 RNA polymerase sigma factor insig. 41 82
  Pseudomonas fluorescens SBW25-INTG PFLU_RS11840 RNA polymerase sigma factor sig. 41 82
  Variovorax sp. SCN45 GFF96 RNA polymerase ECF-type sigma factor insig. 40 87
  Variovorax sp. SCN45 GFF1727 no description insig. 38 91
  Pseudomonas aeruginosa MRSN321 DY961_RS09155 vreI;inference=COORDINATES RNA polymerase sigma factor VreI sig. 38 91
  Pseudomonas aeruginosa PA14 IKLFDK_02765 RNA polymerase sigma factor VreI insig. 38 91
  Pseudomonas aeruginosa PUPa3 DQ20_RS58865 vreI;inference=COORDINATES RNA polymerase sigma factor VreI sig. 38 91
  Pseudomonas simiae WCS417 PS417_11245 RNA polymerase subunit sigma-24 insig. 40 82
  Rhodopseudomonas palustris CGA009 TX73_006850 RNA polymerase sigma factor insig. 37 91
  Rhodopseudomonas palustris CGA009 TX73_006920 RNA polymerase sigma factor insig. 33 94
  Pseudomonas sp. DMC3 GFF3003 hypothetical protein insig. 43 82
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_641 Extracytoplasmic function (ECF) sigma factor VreI insig. 42 82
  Pseudomonas fluorescens FW300-N2C3 AO356_24740 RNA polymerase subunit sigma-24 insig. 41 82
  Pseudomonas sp. RS175 PFR28_01609 hypothetical protein sig. 41 82
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2986 RNA polymerase sigma factor, sigma-70 family insig. 38 82
  Pseudomonas sp. BP01 JOY50_RS02475 sigma-70 family RNA polymerase sigma factor no data 41 84
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2727 FIG006045: Sigma factor, ECF subfamily insig. 37 89
  Rhodospirillum rubrum S1H Rru_A1438 Sigma-24 (FecI) (NCBI) cofit 36 85
  Klebsiella pneumoniae MKP103 KDGMDA_00205 RNA polymerase sigma factor FecI insig. 36 81
  Ralstonia solanacearum PSI07 RPSI07_RS10560 RNA polymerase sigma factor insig. 34 91
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS05075 RNA polymerase sigma factor insig. 37 78
  Pseudomonas stutzeri RCH2 Psest_0650 RNA polymerase sigma factor, sigma-70 family insig. 37 87
  Escherichia coli ECOR38 HEPCGN_09830 fecI RNA polymerase sigma factor FecI insig. 35 81
  Cupriavidus basilensis FW507-4G11 RR42_RS31145 RNA polymerase sigma factor insig. 35 83
  Escherichia coli BL21 ECD_04159 RNA polymerase sigma-19 factor, fec operon-specific; ECF sigma factor insig. 35 81
  Escherichia coli Nissle 1917 ECOLIN_RS25750 RNA polymerase sigma factor FecI insig. 35 81
  Escherichia coli BW25113 b4293 fecI KpLE2 phage-like element; RNA polymerase, sigma 19 factor (NCBI) strong 35 81
  Pseudomonas sp. BP01 JOY50_RS22200 sigma-70 family RNA polymerase sigma factor insig. 37 84
  Sphingobium sp. HT1-2 GFF2715 sigma factor insig. 37 73
  Pseudomonas sp. BP01 JOY50_RS12755 sigma-70 family RNA polymerase sigma factor insig. 35 81
  Pseudomonas putida KT2440 PP_0667 RNA polymerase sigma-70 factor, ECF subfamily insig. 35 80
  Variovorax sp. SCN45 GFF5862 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 34 80
  Azospirillum brasilense Sp245 AZOBR_RS26615 RNA polymerase insig. 33 85
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS06665 RNA polymerase sigma factor insig. 32 91
  Ralstonia solanacearum UW163 UW163_RS06960 RNA polymerase sigma factor insig. 32 91
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2440 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 37 84
  Xanthobacter sp. DMC5 GFF2424 putative RNA polymerase sigma factor FecI insig. 36 82
  Azospirillum brasilense Sp245 AZOBR_RS29160 putative RNA polymerase sigma-70 factor ECF subfamily insig. 31 88
  Azospirillum brasilense Sp245 AZOBR_RS27315 RNA polymerase sigma 70 insig. 36 89
  Azospirillum sp. SherDot2 MPMX19_03082 ECF RNA polymerase sigma factor SigE insig. 35 88
  Pseudomonas sp. BP01 JOY50_RS12920 RNA polymerase sigma factor insig. 34 83
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5307 FIG006045: Sigma factor, ECF subfamily strong 34 89
  Agrobacterium fabrum C58 Atu5309 ECF family RNA polymerase sigma factor no data 28 87
  Pseudomonas sp. SVBP6 COO64_RS15350 sigma-70 family RNA polymerase sigma factor insig. 36 83
  Pectobacterium carotovorum WPP14 HER17_RS14055 sigma-70 family RNA polymerase sigma factor insig. 36 85
  Pseudomonas sp. DMC3 GFF1353 putative RNA polymerase sigma factor FecI cofit 37 87
  Pseudomonas segetis P6 ACVTMO_RS11095 sigma-70 family RNA polymerase sigma factor insig. 37 80
  Variovorax sp. SCN45 GFF5284 RNA polymerase ECF-type sigma factor insig. 37 82
  Pseudomonas sp. BP01 JOY50_RS19840 sigma-70 family RNA polymerase sigma factor no data 35 82
  Pseudomonas putida KT2440 PP_3086 putative RNA polymerase sigma-70 factor insig. 35 82
  Serratia liquefaciens MT49 IAI46_11745 sigma-70 family RNA polymerase sigma factor no data 30 86
  Pseudomonas aeruginosa PA14 IKLFDK_13675 RNA polymerase subunit sigma insig. 36 86
  Azospirillum sp. SherDot2 MPMX19_03088 putative RNA polymerase sigma factor FecI insig. 36 89
  Pseudomonas fluorescens FW300-N2C3 AO356_22495 RNA polymerase subunit sigma-24 insig. 34 77
  Pseudomonas fluorescens FW300-N2C3 AO356_16910 RNA polymerase subunit sigma insig. 33 89
  Ralstonia solanacearum GMI1000 RS_RS14615 RNA polymerase sigma factor insig. 32 84
  Pseudomonas aeruginosa MRSN321 DY961_RS28585 sigma-70 family RNA polymerase sigma factor insig. 33 86
  Pseudomonas aeruginosa PA14 IKLFDK_09340 RNA polymerase subunit sigma no data 33 86
  Pseudomonas aeruginosa PUPa3 DQ20_RS38070 sigma-70 family RNA polymerase sigma factor no data 33 86
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_398 FIG006045: Sigma factor, ECF subfamily insig. 34 77
  Pseudomonas sp. SVBP6 COO64_RS16360 RNA polymerase sigma factor sig. 32 81
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0766 RNA polymerase sigma factor, sigma-70 family insig. 31 82
  Pseudomonas fluorescens SBW25 PFLU_RS17395 sigma-70 family RNA polymerase sigma factor insig. 33 98
  Pseudomonas fluorescens SBW25-INTG PFLU_RS17395 sigma-70 family RNA polymerase sigma factor strong 33 98
  Sphingobium sp. HT1-2 GFF5333 sigma factor cofit 32 83
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09435 RNA polymerase sigma factor insig. 31 89
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_118 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 36 84
  Pseudomonas segetis P6 ACVTMO_RS15980 sigma-70 family RNA polymerase sigma factor insig. 34 84
  Acinetobacter baumannii LAC-4 RR41_RS08490 sigma-70 family RNA polymerase sigma factor strong 30 80
  Klebsiella michiganensis M5al BWI76_RS11395 RNA polymerase sigma factor FecI strong 28 92
  Pseudomonas fluorescens FW300-N2C3 AO356_21215 RNA polymerase subunit sigma-24 insig. 35 84
  Pseudomonas simiae WCS417 PS417_09655 RNA polymerase sigma factor insig. 35 83
  Pseudomonas sp. RS175 PFR28_02859 putative RNA polymerase sigma factor FecI insig. 34 89
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09420 RNA polymerase sigma factor sig. 31 84
  Rhodospirillum rubrum S1H Rru_A0883 Sigma-24 (FecI) (NCBI) insig. 36 88
  Methylophilus sp. DMC18 GFF1870 hypothetical protein insig. 31 82
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_29 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 35 84
  Pseudomonas lactucae CFBP13502 GEMAOFIL_02847 putative RNA polymerase sigma factor FecI no data 35 85
  Variovorax sp. SCN45 GFF4658 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 30 83
  Dechlorosoma suillum PS Dsui_2977 RNA polymerase sigma factor, sigma-70 family insig. 34 83
  Paraburkholderia sabiae LMG 24235 QEN71_RS15840 RNA polymerase factor sigma-70 sig. 31 87
  Pseudomonas lactucae CFBP13502 GEMAOFIL_02135 putative RNA polymerase sigma factor FecI cofit 34 83
  Pseudomonas sp. RS175 PFR28_00232 putative RNA polymerase sigma factor FecI insig. 33 86
  Methylophilus sp. DMC18 GFF1862 putative RNA polymerase sigma factor FecI insig. 32 80
  Pseudomonas fluorescens SBW25 PFLU_RS13600 sigma-70 family RNA polymerase sigma factor insig. 34 86
  Pseudomonas fluorescens SBW25-INTG PFLU_RS13600 sigma-70 family RNA polymerase sigma factor insig. 34 86
  Pseudomonas fluorescens SBW25 PFLU_RS30180 sigma-70 family RNA polymerase sigma factor insig. 33 86
  Pseudomonas fluorescens SBW25-INTG PFLU_RS30180 sigma-70 family RNA polymerase sigma factor insig. 33 86
  Pseudomonas aeruginosa MRSN321 DY961_RS18835 RNA polymerase sigma factor sig. 33 81
  Pseudomonas aeruginosa PA14 IKLFDK_06170 RNA polymerase subunit sigma no data 33 81