Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| Burkholderia phytofirmans PsJN | BPHYT_RS18425 | | histidine kinase | insig. | 100 | 100 |
| Paraburkholderia graminis OAS925 | ABIE53_004329 | | two-component system response regulator ChvI | insig. | 81 | 100 |
o | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01637 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | insig. | 78 | 100 |
o | Paraburkholderia sabiae LMG 24235 | QEN71_RS31525 | | response regulator | insig. | 59 | 100 |
| Burkholderia phytofirmans PsJN | BPHYT_RS29320 | | histidine kinase | insig. | 39 | 94 |
| Burkholderia phytofirmans PsJN | BPHYT_RS32660 | | chemotaxis protein CheY | no data | 45 | 80 |
| Paraburkholderia graminis OAS925 | ABIE53_000192 | | CheY-like chemotaxis protein | sig. | 36 | 98 |
| Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_00687 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | insig. | 36 | 96 |
| Burkholderia phytofirmans PsJN | BPHYT_RS08420 | | histidine kinase | sig. | 38 | 91 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS10585 | | response regulator | no data | 34 | 91 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS43810 | | response regulator | insig. | 35 | 94 |
| Vibrio cholerae E7946 ATCC 55056 | CSW01_19555 | | response regulator | insig. | 35 | 91 |
| Burkholderia phytofirmans PsJN | BPHYT_RS28430 | | histidine kinase | insig. | 35 | 82 |
| Paraburkholderia graminis OAS925 | ABIE53_004461 | | CheY-like chemotaxis protein | sig. | 35 | 90 |
| Dechlorosoma suillum PS | Dsui_1890 | | diguanylate cyclase (GGDEF) domain-containing protein | insig. | 41 | 54 |
| Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_03790 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | insig. | 35 | 90 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS19005 | | response regulator | cofit | 36 | 90 |
| Pseudomonas putida KT2440 | PP_2942 | | Response regulator | insig. | 32 | 98 |
| Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS11185 | | response regulator | insig. | 32 | 97 |
| Agrobacterium fabrum C58 | Atu1297 | | two component response regulator | insig. | 37 | 90 |
| Pseudomonas lactucae CFBP13502 | GEMAOFIL_03092 | | Protein-glutamate methylesterase/protein-glutamine glutaminase | insig. | 31 | 81 |
| Phocaeicola dorei CL03T12C01 | ABI39_RS05860 | | response regulator | insig. | 32 | 97 |
| Herbaspirillum seropedicae SmR1 | HSERO_RS18730 | | histidine kinase | insig. | 39 | 87 |
| Shewanella amazonensis SB2B | Sama_2951 | | response regulator receiver protein (RefSeq) | insig. | 33 | 98 |
| Pseudomonas putida KT2440 | PP_3833 | | Response regulator | strong | 32 | 91 |
| Azospirillum brasilense Sp245 | AZOBR_RS30505 | | transcriptional regulator | strong | 32 | 97 |
| Paraburkholderia graminis OAS925 | ABIE53_006006 | | adenylate cyclase | sig. | 33 | 98 |
| Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02781 | | Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains | insig. | 33 | 98 |
| Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS15250 | | response regulator | cofit | 33 | 90 |
| Burkholderia phytofirmans PsJN | BPHYT_RS19995 | | response regulator receiver | insig. | 33 | 90 |
| Ralstonia solanacearum PSI07 | RPSI07_RS05625 | | two-component system response regulator | insig. | 35 | 98 |
| Rhodopseudomonas palustris CGA009 | TX73_024820 | | phosphate regulon transcriptional regulator PhoB | insig. | 35 | 97 |
| Sinorhizobium meliloti 1021 | SMc01370 | | response regulator PleD | insig. | 34 | 90 |
| Herbaspirillum seropedicae SmR1 | HSERO_RS17510 | | two component response regulator protein | insig. | 30 | 90 |
| Azospirillum sp. SherDot2 | MPMX19_02618 | | Transcriptional regulatory protein BaeR | insig. | 33 | 90 |
| Magnetospirillum magneticum AMB-1 | AMB_RS01390 | | DNA-binding response regulator | no data | 30 | 90 |
| Dickeya dianthicola 67-19 | HGI48_RS15735 | | two-component system response regulator GlrR | insig. | 36 | 81 |
| Dickeya dianthicola ME23 | DZA65_RS16815 | | two-component system response regulator GlrR | insig. | 36 | 81 |
| Sphingomonas koreensis DSMZ 15582 | Ga0059261_2054 | | Response regulator receiver domain | insig. | 35 | 90 |
| Paraburkholderia graminis OAS925 | ABIE53_000200 | | CheY-like chemotaxis protein | insig. | 32 | 100 |
| Dickeya dianthicola ME23 | DZA65_RS10635 | | HDOD domain-containing protein | insig. | 37 | 90 |
| Pseudomonas sp. DMC3 | GFF3553 | | Transcriptional regulatory protein WalR | insig. | 32 | 92 |
| Pseudomonas sp. BP01 | JOY50_RS04055 | | response regulator | no data | 30 | 92 |
| Rhodopseudomonas palustris CGA009 | TX73_001855 | | response regulator transcription factor | no data | 34 | 94 |
| Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS09470 | | response regulator transcription factor | sig. | 34 | 80 |
| Rhodospirillum rubrum S1H | Rru_A0522 | | Response regulator receiver domain protein (CheY) (NCBI) | insig. | 32 | 90 |
| Desulfovibrio vulgaris Hildenborough JW710 | DVU0258 | | sensory box histidine kinase/response regulator (TIGR) | strong | 32 | 98 |
| Rhodospirillum rubrum S1H | Rru_A0603 | | Two component Transcriptional regulator, Winged helix family (NCBI) | cofit | 31 | 89 |
| Phaeobacter inhibens DSM 17395 | PGA1_c01150 | | transcriptional regulatory protein ChvI | strong | 31 | 91 |
| Pseudomonas sp. RS175 | PFR28_00264 | | Sensor histidine kinase RcsC | insig. | 37 | 89 |
| Dickeya dadantii 3937 | DDA3937_RS15640 | | two-component system response regulator GlrR | cofit | 36 | 81 |
| Rhodopseudomonas palustris CGA009 | TX73_016195 | | PleD family two-component system response regulator | insig. | 35 | 90 |
| Desulfovibrio vulgaris Miyazaki F | DvMF_2550 | | multi-sensor signal transduction histidine kinase (RefSeq) | insig. | 33 | 99 |
| Bosea sp. OAE506 | ABIE41_RS02675 | | response regulator transcription factor | no data | 33 | 94 |
| Magnetospirillum magneticum AMB-1 | AMB_RS06935 | | phosphate regulon transcriptional regulatory protein PhoB | insig. | 32 | 89 |
| Herbaspirillum seropedicae SmR1 | HSERO_RS12350 | | histidine kinase | insig. | 31 | 92 |
| Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS08910 | | response regulator | insig. | 31 | 90 |
| Shewanella amazonensis SB2B | Sama_3110 | | putative integral membrane sensor protein (RefSeq) | insig. | 36 | 90 |
| Xanthobacter sp. DMC5 | GFF4134 | | Transcriptional regulatory protein BaeR | no data | 32 | 94 |
| Erwinia tracheiphila HP pepo 2.2 | IJEDHG_02930 | qseF | two-component system response regulator QseF/GlrR | cofit | 34 | 91 |
| Erwinia tracheiphila SCR3 | LU632_RS17930 | glrR | two-component system response regulator GlrR | insig. | 34 | 91 |
| Phocaeicola dorei CL03T12C01 | ABI39_RS03030 | | response regulator | insig. | 31 | 90 |
| Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS17665 | | hypothetical protein | strong | 27 | 92 |
| Sphingomonas koreensis DSMZ 15582 | Ga0059261_0914 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | no data | 42 | 54 |
| Caulobacter crescentus NA1000 | CCNA_03585 | | chemotaxis receiver domain protein CheYIV | strong | 39 | 68 |
| Caulobacter crescentus NA1000 Δfur | CCNA_03585 | | chemotaxis receiver domain protein CheYIV | cofit | 39 | 68 |
| Dickeya dianthicola 67-19 | HGI48_RS10215 | | HDOD domain-containing protein | insig. | 37 | 90 |
| Azospirillum brasilense Sp245 | AZOBR_RS01105 | | PhoB family transcriptional regulator | insig. | 29 | 89 |
| Pseudomonas aeruginosa PA14 | IKLFDK_08740 | | response regulator transcription factor ParR | sig. | 29 | 94 |
| Dickeya dadantii 3937 | DDA3937_RS10185 | | HDOD domain-containing protein | insig. | 37 | 90 |
| Azospirillum sp. SherDot2 | MPMX19_02587 | | Phosphate regulon transcriptional regulatory protein PhoB | cofit | 33 | 89 |
| Magnetospirillum magneticum AMB-1 | AMB_RS09930 | | hybrid sensor histidine kinase/response regulator | cofit | 38 | 78 |
| Xanthobacter sp. DMC5 | GFF1825 | | Sensor histidine kinase RcsC | insig. | 34 | 90 |
| Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_2719 | | Sensor histidine kinase | sig. | 32 | 88 |
| Pseudomonas sp. RS175 | PFR28_01470 | | Transcriptional regulatory protein WalR | insig. | 32 | 91 |
| Bacteroides thetaiotaomicron VPI-5482 | BT0366 | | two-component system sensor histidine kinase/response regulator, hybrid ('one component system') (NCBI ptt file) | sig. | 27 | 97 |
| Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_06203 | | PAS domain S-box-containing protein | insig. | 33 | 86 |
| Bacteroides thetaiotaomicron VPI-5482 | BT2971 | | two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) | insig. | 30 | 90 |
| Dechlorosoma suillum PS | Dsui_3124 | | response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains | cofit | 41 | 53 |
| Ralstonia sp. UNC404CL21Col | ABZR87_RS16850 | | HD domain-containing phosphohydrolase | insig. | 36 | 86 |
| Phocaeicola dorei CL03T12C01 | ABI39_RS03865 | | response regulator transcription factor | insig. | 34 | 80 |
| Dechlorosoma suillum PS | Dsui_2046 | | PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein | cofit | 33 | 96 |
| Pseudomonas fluorescens SBW25 | PFLU_RS16995 | | response regulator | insig. | 31 | 90 |
| Pseudomonas fluorescens SBW25-INTG | PFLU_RS16995 | | response regulator | insig. | 31 | 90 |
| Shewanella oneidensis MR-1 | SO2539 | | response regulator (NCBI ptt file) | insig. | 28 | 98 |
| Shewanella amazonensis SB2B | Sama_0437 | | response regulator receiver protein (RefSeq) | strong | 33 | 89 |
| Caulobacter crescentus NA1000 | CCNA_00760 | | two component sensor histidine kinase | cofit | 31 | 88 |
| Caulobacter crescentus NA1000 Δfur | CCNA_00760 | | two component sensor histidine kinase | cofit | 31 | 88 |
| Sinorhizobium meliloti 1021 | SMc02560 | | transcriptional regulator | no data | 31 | 91 |
| Phocaeicola dorei CL03T12C01 | ABI39_RS03955 | | response regulator | insig. | 30 | 89 |
| Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS09500 | | response regulator | insig. | 30 | 89 |
| Pseudomonas lactucae CFBP13502 | GEMAOFIL_02886 | | Sensor histidine kinase RcsC | insig. | 35 | 79 |
| Rhizobium sp. OAE497 | ABIE40_RS07330 | | PleD family two-component system response regulator | cofit | 33 | 90 |
| Acidovorax sp. GW101-3H11 | Ac3H11_4674 | | Nitrogen regulation protein NR(I) | no data | 33 | 96 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS29780 | | response regulator | insig. | 32 | 90 |
| Pseudomonas lactucae CFBP13502 | GEMAOFIL_02339 | | Sensor histidine kinase RcsC | cofit | 30 | 89 |
| Rhodopseudomonas palustris CGA009 | TX73_006030 | | response regulator | insig. | 27 | 93 |
| Shewanella loihica PV-4 | Shew_3199 | | response regulator receiver modulated metal dependent phosphohydrolase (RefSeq) | insig. | 32 | 98 |
| Desulfovibrio vulgaris Hildenborough JW710 | DVU0110 | ntrC | sigma-54 dependent transcriptional regulator/response regulator (TIGR) | cofit | 32 | 100 |
| Variovorax sp. SCN45 | GFF1544 | | Two-component system sensor histidine kinase/response regulator hybrid | insig. | 32 | 98 |