Homologs of A4249_RS01090 from Brevundimonas sp. GW460-12-10-14-LB2

sigma-70 family RNA polymerase sigma factor
SEED: RNA polymerase sigma-70 factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS01090 sigma-70 family RNA polymerase sigma factor insig. 100 100
o Caulobacter crescentus NA1000 CCNA_03362 ECF-family RNA polymerase sigma factor strong 55 94
o Caulobacter crescentus NA1000 Δfur CCNA_03362 ECF-family RNA polymerase sigma factor cofit 55 94
o Burkholderia phytofirmans PsJN BPHYT_RS25560 RNA polymerase sigma factor insig. 49 92
o Variovorax sp. OAS795 ABID97_RS16825 sigma-70 family RNA polymerase sigma factor insig. 49 94
  Acidovorax sp. GW101-3H11 Ac3H11_1827 RNA polymerase sigma-70 factor, ECF subfamily insig. 49 92
o Variovorax sp. SCN45 GFF320 RNA polymerase ECF-type sigma factor insig. 51 94
o Paraburkholderia sabiae LMG 24235 QEN71_RS20845 sigma-70 family RNA polymerase sigma factor insig. 47 92
o Sphingomonas koreensis DSMZ 15582 Ga0059261_3636 RNA polymerase sigma factor, sigma-70 family insig. 48 92
o Herbaspirillum seropedicae SmR1 HSERO_RS16195 RNA polymerase sigma factor insig. 47 92
  Burkholderia phytofirmans PsJN BPHYT_RS25505 RNA polymerase sigma factor insig. 46 93
o Agrobacterium fabrum C58 Atu2268 ECF family sigma factor insig. 48 88
o Pseudomonas stutzeri RCH2 Psest_0114 RNA polymerase sigma factor, sigma-70 family insig. 46 95
o Pseudomonas putida KT2440 PP_0994 putative RNA polymerase sigma factor insig. 46 96
o Rhizobium sp. OAE497 ABIE40_RS01010 sigma-70 family RNA polymerase sigma factor insig. 39 92
o Dechlorosoma suillum PS Dsui_0155 RNA polymerase sigma factor, sigma-70 family strong 41 92
o Bosea sp. OAE506 ABIE41_RS02435 sigma-70 family RNA polymerase sigma factor insig. 41 91
o Rhodopseudomonas palustris CGA009 TX73_009325 sigma-70 family RNA polymerase sigma factor insig. 37 94
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01786 RNA polymerase sigma-70 factor, ECF subfamily insig. 44 95
o Azospirillum sp. SherDot2 MPMX19_04570 ECF RNA polymerase sigma factor SigF insig. 36 90
o Sinorhizobium meliloti 1021 SM_b20531 RNA polymerase sigma factor insig. 37 92
  Rhizobium sp. OAE497 ABIE40_RS19610 sigma-70 family RNA polymerase sigma factor insig. 35 97
  Rhodanobacter sp. FW510-T8 OKGIIK_03490 hypothetical protein insig. 36 85
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS09080 sigma-70 family RNA polymerase sigma factor cofit 34 85
o Pantoea sp. MT58 IAI47_20240 sigma-70 family RNA polymerase sigma factor insig. 34 89
  Rhodanobacter denitrificans MT42 LRK55_RS14380 sigma-70 family RNA polymerase sigma factor insig. 37 89
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS14665 sigma-70 family RNA polymerase sigma factor insig. 37 89
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3853 RNA polymerase sigma factor, sigma-70 family insig. 34 84
  Sinorhizobium meliloti 1021 SMc01506 RNA polymerase sigma factor strong 33 66
  Rhodospirillum rubrum S1H Rru_A3287 Sigma-24 (FecI) (NCBI) no data 32 78
  Rhizobium sp. OAE497 ABIE40_RS14450 RNA polymerase sigma factor insig. 33 64
  Azospirillum brasilense Sp245 AZOBR_RS06360 RNA polymerase subunit sigma-24 no data 33 75
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS15190 RNA polymerase sigma factor insig. 29 72
  Burkholderia phytofirmans PsJN BPHYT_RS08240 RNA polymerase subunit sigma-24 sig. 35 77
  Kangiella aquimarina DSM 16071 B158DRAFT_0139 RNA polymerase sigma factor, sigma-70 family insig. 31 77
  Azospirillum brasilense Sp245 AZOBR_RS00810 RNA polymerase sigma factor RpoE insig. 34 66
  Caulobacter crescentus NA1000 CCNA_03589 RNA polymerase EcfG family sigma factor sigT strong 32 82
  Caulobacter crescentus NA1000 Δfur CCNA_03589 RNA polymerase EcfG family sigma factor sigT cofit 32 82
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS14775 sigma-70 family RNA polymerase sigma factor strong 32 82
  Azospirillum sp. SherDot2 MPMX19_00764 ECF RNA polymerase sigma factor EcfG insig. 30 80
  Bosea sp. OAE506 ABIE41_RS04095 sigma-70 family RNA polymerase sigma factor strong 30 70
  Azospirillum brasilense Sp245 AZOBR_RS10625 RNA polymerase sigma-70 factor insig. 31 72
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05124 RNA polymerase sigma-70 factor, ECF subfamily insig. 36 70
  Paraburkholderia graminis OAS925 ABIE53_002425 RNA polymerase sigma-70 factor (ECF subfamily) insig. 34 78
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05041 RNA polymerase sigma-70 factor, ECF subfamily insig. 29 80
  Caulobacter crescentus NA1000 CCNA_02977 RNA polymerase ECF-type sigma factor sigU strong 29 80
  Caulobacter crescentus NA1000 Δfur CCNA_02977 RNA polymerase ECF-type sigma factor sigU cofit 29 80
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3492 RNA polymerase sigma factor, sigma-70 family strong 35 81
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS02635 RNA polymerase sigma factor insig. 33 75
  Azospirillum sp. SherDot2 MPMX19_01371 hypothetical protein insig. 31 72
  Azospirillum sp. SherDot2 MPMX19_02022 ECF RNA polymerase sigma factor RpoE insig. 31 81
  Shewanella loihica PV-4 Shew_1231 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 30 92
  Rhodanobacter sp. FW510-T8 OKGIIK_05040 RNA polymerase subunit sigma insig. 29 89
  Variovorax sp. SCN45 GFF4558 RNA polymerase ECF-type sigma factor insig. 33 84
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS01495 sigma-70 family RNA polymerase sigma factor insig. 30 89
  Bacteroides ovatus ATCC 8483 BACOVA_03129 Sigma-70 region 2 insig. 29 77
  Rhizobium sp. OAE497 ABIE40_RS18210 sigma-70 family RNA polymerase sigma factor insig. 31 82
o Mycobacterium tuberculosis H37Rv Rv3414c Probable alternative RNA polymerase sigma-D factor SigD sig. 30 89
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS01700 RNA polymerase sigma factor insig. 27 72
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS00795 sigma-70 family RNA polymerase sigma factor strong 26 77
  Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 30 95
  Dinoroseobacter shibae DFL-12 Dshi_3835 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 29 73
  Rhodospirillum rubrum S1H Rru_A0722 Sigma-24 (FecI) (NCBI) insig. 29 81
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3981 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 28 75
  Alteromonas macleodii MIT1002 MIT1002_01916 RNA polymerase sigma factor CarQ insig. 29 69
  Alteromonas macleodii MIT1002 MIT1002_00882 Sigma-W factor insig. 26 83
  Azospirillum brasilense Sp245 AZOBR_RS28490 hypothetical protein sig. 30 95
  Bacteroides stercoris CC31F HMPREF1181_RS02545 sigma-70 family RNA polymerase sigma factor insig. 31 73
  Mycobacterium tuberculosis H37Rv Rv1221 Alternative RNA polymerase sigma factor SigE insig. 30 74
  Agrobacterium fabrum C58 Atu4160 RNA polymerase sigma factor strong 30 64
  Sinorhizobium meliloti 1021 SMc01419 RNA polymerase sigma factor protein sig. 28 72
  Bacteroides stercoris CC31F HMPREF1181_RS04900 RNA polymerase sigma-70 factor insig. 25 95
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS00565 RNA polymerase sigma factor insig. 36 56
  Shewanella loihica PV-4 Shew_1476 RNA polymerase sigma factor (RefSeq) insig. 28 77
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4300 RNA polymerase sigma factor, sigma-70 family insig. 28 77
  Phaeobacter inhibens DSM 17395 PGA1_c27070 RNA polymerase sigma factor 70 (ECF15 subgroup, ECF26 subgroup) insig. 34 63
  Shewanella amazonensis SB2B Sama_2036 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 30 83
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12095 RNA polymerase subunit sigma-70 insig. 22 74
  Caulobacter crescentus NA1000 CCNA_02837 RNA polymerase ECF-type sigma factor insig. 32 85
  Caulobacter crescentus NA1000 Δfur CCNA_02837 RNA polymerase ECF-type sigma factor cofit 32 85
  Bacteroides ovatus ATCC 8483 BACOVA_05165 Sigma-70 region 2 insig. 26 71
  Paraburkholderia sabiae LMG 24235 QEN71_RS23005 sigma-70 family RNA polymerase sigma factor insig. 31 77
  Phocaeicola dorei CL03T12C01 ABI39_RS02030 RNA polymerase sigma-70 factor insig. 28 86
  Ralstonia sp. UNC404CL21Col ABZR87_RS03700 RNA polymerase sigma factor insig. 29 81
  Azospirillum sp. SherDot2 MPMX19_05214 ECF RNA polymerase sigma factor SigE insig. 29 95
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS13165 RNA polymerase sigma factor insig. 27 71
  Bacteroides stercoris CC31F HMPREF1181_RS08110 sigma-70 family RNA polymerase sigma factor insig. 26 80
  Bacteroides thetaiotaomicron VPI-5482 BT3269 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 26 91
  Paraburkholderia sabiae LMG 24235 QEN71_RS00095 RNA polymerase sigma factor insig. 28 78
  Phocaeicola dorei CL03T12C01 ABI39_RS04680 RNA polymerase sigma factor insig. 27 73
  Bacteroides thetaiotaomicron VPI-5482 BT0188 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 26 95
  Bacteroides thetaiotaomicron VPI-5482 BT4347 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 27 71
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_11965 RNA polymerase subunit sigma insig. 25 71
  Paraburkholderia sabiae LMG 24235 QEN71_RS04575 RNA polymerase sigma factor RpoE strong 25 85
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS16675 hypothetical protein insig. 27 74
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4350 RNA polymerase sigma-54 factor RpoN insig. 31 76
  Rhodopseudomonas palustris CGA009 TX73_002850 sigma-70 family RNA polymerase sigma factor insig. 29 87
  Azospirillum sp. SherDot2 MPMX19_05475 hypothetical protein no data 32 61
  Cupriavidus basilensis FW507-4G11 RR42_RS35625 RNA polymerase sigma24 factor insig. 30 84
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS12120 RNA polymerase sigma factor sig. 27 73