Homologs of Shew_0384 from Shewanella loihica PV-4

regulatory protein CsrD (RefSeq)
SEED: MSHA biogenesis protein MshH

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella loihica PV-4 Shew_0384 regulatory protein CsrD (RefSeq) strong 100 100
o Shewanella amazonensis SB2B Sama_0449 regulatory protein CsrD (RefSeq) sig. 61 99
o Shewanella oneidensis MR-1 SO4116 mshH MSHA biogenesis protein MshH (NCBI ptt file) strong 61 99
o Shewanella sp. ANA-3 Shewana3_3668 regulatory protein CsrD (RefSeq) sig. 61 100
o Dickeya dianthicola 67-19 HGI48_RS01345 RNase E specificity factor CsrD cofit 30 97
o Dickeya dianthicola ME23 DZA65_RS01405 RNase E specificity factor CsrD sig. 30 97
o Rahnella sp. WP5 EX31_RS12230 RNase E specificity factor CsrD insig. 30 94
o Vibrio cholerae E7946 ATCC 55056 CSW01_02100 RNase E specificity factor CsrD cofit 30 98
o Erwinia amylovora T8 OLJFJH_06905 RNase E specificity factor CsrD strong 30 93
o Dickeya dadantii 3937 DDA3937_RS01425 RNase E specificity factor CsrD cofit 30 97
o Escherichia coli ECOR27 NOLOHH_09505 csrD RNase E specificity factor CsrD cofit 30 99
o Escherichia coli BL21 ECD_03111 targeting factor for csrBC sRNA degradation cofit 30 99
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00453 RNase E specificity factor CsrD cofit 30 99
o Escherichia coli BW25113 b3252 yhdA conserved inner membrane protein (NCBI) sig. 30 99
o Escherichia fergusonii Becca EFB2_00579 RNase E specificity factor CsrD insig. 29 99
o Escherichia coli ECRC100 OKFHMN_17720 csrD RNase E specificity factor CsrD cofit 29 99
o Escherichia coli ECRC101 MCAODC_08240 csrD RNase E specificity factor CsrD cofit 29 99
o Escherichia coli ECRC102 NIAGMN_15480 csrD RNase E specificity factor CsrD cofit 29 99
o Escherichia coli ECRC62 BNILDI_02015 csrD RNase E specificity factor CsrD cofit 29 99
o Escherichia coli ECRC98 JDDGAC_21345 csrD RNase E specificity factor CsrD cofit 29 99
o Escherichia coli ECRC99 KEDOAH_10430 csrD RNase E specificity factor CsrD no data 29 99
o Escherichia coli Nissle 1917 ECOLIN_RS18635 RNase E specificity factor CsrD cofit 29 99
o Escherichia coli ECOR38 HEPCGN_16585 csrD RNase E specificity factor CsrD cofit 29 99
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2133 RNase E specificity factor CsrD strong 31 98
o Serratia liquefaciens MT49 IAI46_22725 RNase E specificity factor CsrD cofit 29 98
o Enterobacter asburiae PDN3 EX28DRAFT_3302 diguanylate cyclase (GGDEF) domain cofit 30 99
o Enterobacter sp. TBS_079 MPMX20_04158 RNase E specificity factor CsrD strong 29 99
o Erwinia tracheiphila SCR3 LU632_RS21455 csrD RNase E specificity factor CsrD insig. 28 98
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_13555 csrD RNase E specificity factor CsrD cofit 28 98
o Klebsiella michiganensis M5al BWI76_RS25505 RNase E specificity factor CsrD strong 29 99
o Pectobacterium carotovorum WPP14 HER17_RS20175 RNase E specificity factor CsrD insig. 29 97
o Klebsiella pneumoniae MKP103 KDGMDA_06280 Lipoprotein strong 29 99
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS11025 RNase E specificity factor CsrD cofit 29 89
o Pantoea sp. MT58 IAI47_02430 RNase E specificity factor CsrD insig. 29 89
  Shewanella sp. ANA-3 Shewana3_2167 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 25 69
  Shewanella oneidensis MR-1 SO2507 GGDEF domain protein (NCBI ptt file) insig. 25 69
  Shewanella amazonensis SB2B Sama_1829 putative diguanylate phosphodiesterase (RefSeq) insig. 27 65
  Pseudomonas orientalis W4I3 QF045_RS03595 EAL domain-containing protein cofit 25 69
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1802 Membrane bound c-di-GMP receptor LapD insig. 25 78
  Pseudomonas fluorescens FW300-N2E3 AO353_11170 hypothetical protein strong 25 78
  Pseudomonas putida KT2440 PP_0165 GGDEF domain protein strong 27 69
  Pseudomonas sp. BP01 JOY50_RS28180 lapD cyclic di-GMP receptor LapD no data 27 69
  Pseudomonas sp. RS175 PFR28_04783 hypothetical protein strong 25 78
  Pseudomonas sp. SVBP6 COO64_RS26435 lapD cyclic di-GMP receptor LapD cofit 25 78
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3983 Membrane bound c-di-GMP receptor LapD strong 25 78
  Shewanella loihica PV-4 Shew_2065 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 25 70
  Marinobacter adhaerens HP15 HP15_3533 response regulator receiver (CheY-like) modulated diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 27 69
  Marinobacter adhaerens HP15 HP15_3218 diguanylate cyclase/phosphodiesterase insig. 25 70
  Pseudomonas fluorescens FW300-N2C3 AO356_10580 hypothetical protein cofit 24 78
  Pseudomonas sp. DMC3 GFF4286 hypothetical protein cofit 24 78
  Vibrio cholerae E7946 ATCC 55056 CSW01_03465 GGDEF-domain containing protein cofit 26 65
  Dechlorosoma suillum PS Dsui_0760 diguanylate cyclase (GGDEF) domain-containing protein cofit 27 64
  Pseudomonas fluorescens GW456-L13 PfGW456L13_546 Membrane bound c-di-GMP receptor LapD insig. 24 69
  Herbaspirillum seropedicae SmR1 HSERO_RS13550 diguanylate phosphodiesterase insig. 27 84
  Acidovorax sp. GW101-3H11 Ac3H11_903 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 28 60
  Bosea sp. OAE506 ABIE41_RS19250 EAL domain-containing protein insig. 28 67
  Pseudomonas lactucae CFBP13502 GEMAOFIL_00514 RNase E specificity factor CsrD cofit 23 78
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS02790 EAL domain-containing protein insig. 26 69
  Acidovorax sp. GW101-3H11 Ac3H11_2106 Membrane bound c-di-GMP receptor LapD insig. 26 78
  Synechococcus elongatus PCC 7942 Synpcc7942_1716 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) strong 26 69
  Shewanella loihica PV-4 Shew_3125 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 25 64
  Methylophilus sp. DMC18 GFF1518 hypothetical protein cofit 25 67
  Rhodanobacter denitrificans MT42 LRK55_RS09660 EAL domain-containing protein insig. 25 69
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS10020 EAL domain-containing protein insig. 25 69
  Pectobacterium carotovorum WPP14 HER17_RS05880 EAL domain-containing protein cofit 22 79
  Synechococcus elongatus PCC 7942 Synpcc7942_1859 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) insig. 27 53
  Alteromonas macleodii MIT1002 MIT1002_01618 Cyclic di-GMP phosphodiesterase Gmr insig. 23 69
  Azospirillum sp. SherDot2 MPMX19_04839 hypothetical protein insig. 26 67
  Methylophilus sp. DMC18 GFF247 hypothetical protein insig. 25 65
  Pseudomonas aeruginosa MRSN321 DY961_RS06515 diguanylate cyclase sig. 27 64
  Pseudomonas aeruginosa PA14 IKLFDK_05475 diguanylate cyclase insig. 27 64
  Pseudomonas aeruginosa PUPa3 DQ20_RS46285 diguanylate cyclase cofit 27 64
  Alteromonas macleodii MIT1002 MIT1002_01559 Cyclic di-GMP phosphodiesterase YfgF insig. 27 45
  Alteromonas macleodii MIT1002 MIT1002_01322 Cyclic di-GMP phosphodiesterase Gmr insig. 25 53
  Pseudomonas fluorescens SBW25 PFLU_RS05360 GGDEF and EAL domain-containing protein insig. 26 78
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05360 GGDEF and EAL domain-containing protein insig. 26 78
  Rhodanobacter sp. FW510-T8 OKGIIK_16275 Diguanylate cyclase insig. 27 53
  Desulfovibrio vulgaris Miyazaki F DvMF_1907 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) insig. 28 46
  Pseudomonas sp. S08-1 OH686_07355 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 25 68
  Dechlorosoma suillum PS Dsui_3161 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein sig. 26 65
  Marinobacter adhaerens HP15 HP15_1500 sensory box/GGDEF family protein insig. 26 67
  Acidovorax sp. GW101-3H11 Ac3H11_1143 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) sig. 24 67
  Marinobacter adhaerens HP15 HP15_806 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) insig. 23 67
  Rhodanobacter sp. FW510-T8 OKGIIK_12865 Diguanylate cyclase insig. 26 67
  Cupriavidus basilensis FW507-4G11 RR42_RS03995 diguanylate cyclase insig. 24 64
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2530 Sensory box/GGDEF family protein strong 25 64
  Pseudomonas putida KT2440 PP_5263 GGDEF domain protein sig. 26 64
  Shewanella sp. ANA-3 Shewana3_0133 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) insig. 26 53
  Magnetospirillum magneticum AMB-1 AMB_RS06165 CBS domain-containing protein insig. 25 67
  Ralstonia sp. UNC404CL21Col ABZR87_RS23350 EAL domain-containing protein insig. 24 72
  Shewanella amazonensis SB2B Sama_0965 GGDEF domain-containing protein (RefSeq) sig. 25 69
  Magnetospirillum magneticum AMB-1 AMB_RS18310 bifunctional diguanylate cyclase/phosphodiesterase cofit 23 67
  Pseudomonas fluorescens FW300-N2C3 AO356_03515 hypothetical protein cofit 25 64
  Marinobacter adhaerens HP15 HP15_4050 sensory box/GGDEF family protein cofit 24 67
  Shewanella oneidensis MR-1 SO0141 sensory box protein (NCBI ptt file) strong 25 67
  Agrobacterium fabrum C58 Atu2228 GGDEF family protein insig. 26 53
  Shewanella oneidensis MR-1 SO0437 sensory box protein (NCBI ptt file) strong 22 70
  Paraburkholderia sabiae LMG 24235 QEN71_RS10745 EAL domain-containing protein insig. 24 75
  Kangiella aquimarina DSM 16071 B158DRAFT_0463 PAS domain S-box/diguanylate cyclase (GGDEF) domain insig. 23 67
  Alteromonas macleodii MIT1002 MIT1002_03415 Bacteriophytochrome cph2 insig. 26 53