Homologs of SO4323 from Shewanella oneidensis MR-1

GGDEF domain protein (NCBI ptt file)
SEED: Membrane bound c-di-GMP receptor LapD

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella oneidensis MR-1 SO4323 GGDEF domain protein (NCBI ptt file) cofit 100 100
o Shewanella sp. ANA-3 Shewana3_0376 diguanylate cyclase/phosphodiesterase (RefSeq) sig. 95 100
o Shewanella amazonensis SB2B Sama_3264 putative diguanylate phosphodiesterase (RefSeq) sig. 75 100
o Shewanella loihica PV-4 Shew_0307 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 73 100
o Vibrio cholerae E7946 ATCC 55056 CSW01_19490 GGDEF domain-containing protein cofit 31 99
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4428 Membrane bound c-di-GMP receptor LapD insig. 27 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1802 Membrane bound c-di-GMP receptor LapD insig. 28 99
o Pseudomonas fluorescens FW300-N2E3 AO353_11170 hypothetical protein strong 27 99
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3529 Membrane bound c-di-GMP receptor LapD insig. 28 100
o Pseudomonas sp. RS175 PFR28_04783 hypothetical protein strong 27 99
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3983 Membrane bound c-di-GMP receptor LapD strong 27 99
o Pseudomonas fluorescens FW300-N2C3 AO356_10580 hypothetical protein cofit 28 99
o Acidovorax sp. GW101-3H11 Ac3H11_2106 Membrane bound c-di-GMP receptor LapD insig. 25 99
o Pseudomonas sp. S08-1 OH686_20650 Membrane bound c-di-GMP receptor LapD insig. 27 99
o Alteromonas macleodii MIT1002 MIT1002_01618 Cyclic di-GMP phosphodiesterase Gmr insig. 24 99
  Pseudomonas fluorescens GW456-L13 PfGW456L13_546 Membrane bound c-di-GMP receptor LapD insig. 27 99
  Pseudomonas fluorescens FW300-N2E3 AO353_18415 hypothetical protein insig. 27 100
o Pseudomonas putida KT2440 PP_0165 GGDEF domain protein strong 28 99
o Pseudomonas stutzeri RCH2 Psest_1864 diguanylate cyclase (GGDEF) domain insig. 26 99
o Pectobacterium carotovorum WPP14 HER17_RS05880 EAL domain-containing protein cofit 25 99
o Marinobacter adhaerens HP15 HP15_3218 diguanylate cyclase/phosphodiesterase insig. 23 97
  Alteromonas macleodii MIT1002 MIT1002_01559 Cyclic di-GMP phosphodiesterase YfgF insig. 23 99
  Shewanella loihica PV-4 Shew_3125 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 27 62
  Shewanella amazonensis SB2B Sama_1829 putative diguanylate phosphodiesterase (RefSeq) insig. 24 71
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1842.1 Mlr3171 protein insig. 26 61
  Shewanella sp. ANA-3 Shewana3_2167 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 24 76
  Shewanella amazonensis SB2B Sama_2973 GGDEF domain-containing protein (RefSeq) insig. 26 63
  Shewanella oneidensis MR-1 SO2507 GGDEF domain protein (NCBI ptt file) insig. 24 78
  Rhodospirillum rubrum S1H Rru_A2604 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) (NCBI) insig. 22 76
  Paraburkholderia sabiae LMG 24235 QEN71_RS12220 GGDEF and EAL domain-containing protein insig. 23 64
  Alteromonas macleodii MIT1002 MIT1002_01199 Bacteriophytochrome cph2 insig. 25 61
  Alteromonas macleodii MIT1002 MIT1002_00062 Bacteriophytochrome cph2 insig. 24 75
  Cupriavidus basilensis FW507-4G11 RR42_RS01495 diguanylate cyclase insig. 24 62
  Shewanella loihica PV-4 Shew_2065 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 23 68
  Paraburkholderia graminis OAS925 ABIE53_001117 diguanylate cyclase (GGDEF)-like protein insig. 25 69
  Ralstonia solanacearum PSI07 RPSI07_RS05100 bifunctional diguanylate cyclase/phosphodiesterase insig. 27 65
  Marinobacter adhaerens HP15 HP15_3729 sensory box/GGDEF family protein cofit 24 62
  Pseudomonas stutzeri RCH2 Psest_1163 diguanylate cyclase (GGDEF) domain strong 24 73
  Shewanella loihica PV-4 Shew_2778 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) insig. 26 62
  Acidovorax sp. GW101-3H11 Ac3H11_4120 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 26 63
  Rahnella sp. WP5 EX31_RS07415 bifunctional diguanylate cyclase/phosphodiesterase insig. 23 62
  Paraburkholderia sabiae LMG 24235 QEN71_RS13125 EAL domain-containing protein insig. 25 65
  Dechlorosoma suillum PS Dsui_0894 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein cofit 25 61
  Rhodopseudomonas palustris CGA009 TX73_015335 EAL domain-containing protein insig. 25 62
  Pseudomonas fluorescens GW456-L13 PfGW456L13_3950 Sensory box/GGDEF family protein insig. 24 66
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4399 GGDEF domain/EAL domain protein strong 25 62
  Pseudomonas putida KT2440 PP_2258 Sensory box protein insig. 26 69
  Pseudomonas simiae WCS417 PS417_18610 histidine kinase sig. 26 62
  Pseudomonas fluorescens FW300-N2C3 AO356_12660 diguanylate cyclase sig. 25 62
  Pseudomonas fluorescens SBW25 PFLU_RS20590 EAL domain-containing protein insig. 26 62
  Pseudomonas fluorescens SBW25-INTG PFLU_RS20590 EAL domain-containing protein insig. 26 62
  Pseudomonas putida KT2440 PP_5263 GGDEF domain protein sig. 26 63
  Acidovorax sp. GW101-3H11 Ac3H11_2218 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 25 62
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS12250 diguanylate cyclase insig. 25 62
  Ralstonia solanacearum UW163 UW163_RS01355 diguanylate cyclase insig. 25 62
  Ralstonia solanacearum GMI1000 RS_RS02945 PAS domain S-box protein insig. 25 62
  Pseudomonas fluorescens SBW25 PFLU_RS05370 EAL domain-containing protein insig. 24 76
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05370 EAL domain-containing protein insig. 24 76
  Shewanella sp. ANA-3 Shewana3_1034 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 23 72
  Dechlorosoma suillum PS Dsui_2894 diguanylate cyclase (GGDEF) domain-containing protein cofit 22 73
  Dechlorosoma suillum PS Dsui_1501 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein insig. 25 58
  Paraburkholderia sabiae LMG 24235 QEN71_RS30355 bifunctional diguanylate cyclase/phosphodiesterase insig. 25 65
  Acidovorax sp. GW101-3H11 Ac3H11_1143 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) sig. 25 63
  Pseudomonas sp. RS175 PFR28_02826 hypothetical protein strong 24 62
  Burkholderia phytofirmans PsJN BPHYT_RS28520 hypothetical protein insig. 23 58
  Acidovorax sp. GW101-3H11 Ac3H11_2258 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 25 62
  Pseudomonas fluorescens FW300-N2E3 AO353_09115 diguanylate cyclase strong 25 62
  Vibrio cholerae E7946 ATCC 55056 CSW01_03465 GGDEF-domain containing protein cofit 25 68
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_60 Sensory box/GGDEF family protein insig. 24 62
  Acidovorax sp. GW101-3H11 Ac3H11_1725 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) cofit 22 66
  Ralstonia sp. UNC404CL21Col ABZR87_RS19490 bifunctional diguanylate cyclase/phosphodiesterase strong 26 65
  Pseudomonas sp. RS175 PFR28_04391 hypothetical protein insig. 25 62
  Azospirillum sp. SherDot2 MPMX19_06128 hypothetical protein insig. 24 63
  Magnetospirillum magneticum AMB-1 AMB_RS23225 GGDEF domain-containing protein insig. 24 81
  Shewanella oneidensis MR-1 SO1208 GGDEF domain protein (NCBI ptt file) strong 22 72
  Pseudomonas putida KT2440 PP_1983 PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase insig. 24 66
  Azospirillum sp. SherDot2 MPMX19_05708 hypothetical protein insig. 22 79
  Pseudomonas fluorescens GW456-L13 PfGW456L13_725 Sensory box/GGDEF family protein insig. 26 62
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS18455 phosphodiesterase insig. 25 65
  Ralstonia solanacearum UW163 UW163_RS20675 phosphodiesterase insig. 25 65
  Pseudomonas fluorescens FW300-N2E3 AO353_20610 histidine kinase insig. 25 66
  Shewanella oneidensis MR-1 SO0628 GGDEF domain protein (NCBI ptt file) insig. 24 61
  Ralstonia solanacearum GMI1000 RS_RS22415 bifunctional diguanylate cyclase/phosphodiesterase insig. 26 65
  Pseudomonas fluorescens SBW25 PFLU_RS29340 bifunctional diguanylate cyclase/phosphodiesterase insig. 25 62
  Pseudomonas fluorescens SBW25-INTG PFLU_RS29340 bifunctional diguanylate cyclase/phosphodiesterase strong 25 62
  Sinorhizobium meliloti 1021 SMa0137 Diguanylate cyclase/phosphodiesterase insig. 24 61
  Shewanella amazonensis SB2B Sama_0965 GGDEF domain-containing protein (RefSeq) sig. 22 73
  Marinobacter adhaerens HP15 HP15_215 sensory box/GGDEF family protein insig. 26 61
  Pseudomonas sp. S08-1 OH686_11905 hypothetical protein insig. 26 61
  Alteromonas macleodii MIT1002 MIT1002_01558 Cyclic di-GMP phosphodiesterase Gmr cofit 26 62
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06487 diguanylate cyclase (GGDEF) domain-containing protein insig. 25 58
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1972.1 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 22 74
  Pseudomonas syringae pv. syringae B728a Psyr_2597 diguanylate cyclase/phosphodiesterase insig. 25 62
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2597 diguanylate cyclase/phosphodiesterase insig. 25 62
  Paraburkholderia sabiae LMG 24235 QEN71_RS35965 EAL domain-containing protein strong 26 62
  Shewanella oneidensis MR-1 SO4552 sensory box protein (NCBI ptt file) cofit 24 63
  Herbaspirillum seropedicae SmR1 HSERO_RS13620 diguanylate cyclase strong 24 61
  Cupriavidus basilensis FW507-4G11 RR42_RS22465 membrane protein insig. 23 65
  Pseudomonas syringae pv. syringae B728a Psyr_0074 diguanylate cyclase/phosphodiesterase insig. 25 64
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0074 diguanylate cyclase/phosphodiesterase insig. 25 64