Homologs of SO0569 from Shewanella oneidensis MR-1

sensory box/GGDEF family protein (NCBI ptt file)
SEED: diguanylate cyclase (GGDEF domain) with PAS/PAC sensor

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella oneidensis MR-1 SO0569 sensory box/GGDEF family protein (NCBI ptt file) cofit 100 100
o Shewanella sp. ANA-3 Shewana3_0570 diguanylate cyclase (RefSeq) insig. 94 100
o Shewanella amazonensis SB2B Sama_3137 response regulator receiver protein (RefSeq) strong 74 98
o Shewanella loihica PV-4 Shew_0452 diguanylate cyclase (RefSeq) insig. 73 100
o Pseudomonas stutzeri RCH2 Psest_2106 diguanylate cyclase (GGDEF) domain sig. 51 97
o Marinobacter adhaerens HP15 HP15_2378 sensory box/GGDEF family protein insig. 49 98
o Pseudomonas sp. RS175 PFR28_02096 hypothetical protein insig. 51 97
o Pseudomonas sp. S08-1 OH686_03265 diguanylate cyclase (GGDEF domain) with PAS/PAC sensor insig. 50 96
o Pseudomonas fluorescens FW300-N2C3 AO356_24210 diguanylate cyclase sig. 53 96
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_1642 diguanylate cyclase (GGDEF domain) with PAS/PAC sensor insig. 50 97
o Alteromonas macleodii MIT1002 MIT1002_00653 putative diguanylate cyclase AdrA insig. 46 95
o Paraburkholderia sabiae LMG 24235 QEN71_RS16450 diguanylate cyclase insig. 41 92
o Burkholderia phytofirmans PsJN BPHYT_RS34775 diguanylate cyclase insig. 41 92
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_03607 PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein insig. 41 93
o Paraburkholderia graminis OAS925 ABIE53_004649 diguanylate cyclase (GGDEF)-like protein strong 40 97
  Alteromonas macleodii MIT1002 MIT1002_00935 PAS fold protein insig. 53 49
  Pseudomonas sp. S08-1 OH686_16625 diguanylate cyclase (GGDEF domain) with PAS/PAC sensor insig. 54 43
  Pseudomonas syringae pv. syringae B728a Psyr_0887 sensory box protein insig. 52 46
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0887 sensory box protein insig. 52 46
  Dechlorosoma suillum PS Dsui_1430 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein cofit 32 91
  Desulfovibrio vulgaris Hildenborough JW710 DVU1805 GGDEF domain protein (TIGR) insig. 36 76
  Vibrio cholerae E7946 ATCC 55056 CSW01_14935 hypothetical protein insig. 46 42
  Pectobacterium carotovorum WPP14 HER17_RS14460 diguanylate cyclase AdrA cofit 42 54
  Dickeya dadantii 3937 DDA3937_RS06830 diguanylate cyclase insig. 39 55
  Desulfovibrio vulgaris Miyazaki F DvMF_0509 diguanylate cyclase (RefSeq) insig. 38 67
  Rhodopseudomonas palustris CGA009 TX73_020695 diguanylate cyclase insig. 41 59
  Desulfovibrio vulgaris Miyazaki F DvMF_1477 diguanylate cyclase with PAS/PAC sensor (RefSeq) sig. 35 64
  Serratia liquefaciens MT49 IAI46_05890 diguanylate cyclase insig. 39 52
  Desulfovibrio vulgaris Hildenborough JW710 DVU0940 pleD GGDEF domain protein (TIGR) sig. 44 50
  Marinobacter adhaerens HP15 HP15_3803 GGDEF domain-like protein insig. 37 59
  Azospirillum sp. SherDot2 MPMX19_01436 hypothetical protein insig. 37 63
  Magnetospirillum magneticum AMB-1 AMB_RS06820 GGDEF domain-containing protein cofit 46 51
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS19325 diguanylate cyclase insig. 39 56
  Burkholderia phytofirmans PsJN BPHYT_RS07820 hypothetical protein strong 32 93
  Vibrio cholerae E7946 ATCC 55056 CSW01_12010 GGDEF domain-containing protein insig. 34 65
  Burkholderia phytofirmans PsJN BPHYT_RS29040 diguanylate cyclase strong 33 67
  Kangiella aquimarina DSM 16071 B158DRAFT_0954 diguanylate cyclase (GGDEF) domain insig. 41 52
  Acidovorax sp. GW101-3H11 Ac3H11_3069 Response regulator containing a CheY-like receiver domain and a GGDEF domain insig. 36 65
  Escherichia coli ECOR27 NOLOHH_01540 adrA diguanylate cyclase AdrA insig. 39 53
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03289 putative diguanylate cyclase DgcC insig. 39 53
  Acidovorax sp. GW101-3H11 Ac3H11_4150 diguanylate cyclase strong 43 55
  Rhodospirillum rubrum S1H Rru_A3374 Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain (NCBI) insig. 34 65
  Pseudomonas syringae pv. syringae B728a Psyr_1157 diguanylate cyclase with PAS/PAC sensor insig. 33 89
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1157 diguanylate cyclase with PAS/PAC sensor insig. 33 89
  Enterobacter asburiae PDN3 EX28DRAFT_2586 diguanylate cyclase (GGDEF) domain insig. 40 53
  Pseudomonas fluorescens SBW25 PFLU_RS00925 sensor domain-containing diguanylate cyclase insig. 40 57
  Pseudomonas fluorescens SBW25-INTG PFLU_RS00925 sensor domain-containing diguanylate cyclase sig. 40 57
  Pseudomonas stutzeri RCH2 Psest_1455 diguanylate cyclase (GGDEF) domain insig. 33 70
  Escherichia coli ECRC62 BNILDI_22955 adrA diguanylate cyclase AdrA insig. 39 53
  Azospirillum sp. SherDot2 MPMX19_05239 hypothetical protein insig. 37 60
  Dechlorosoma suillum PS Dsui_3004 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein cofit 42 53
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4282 Protein YaiC insig. 39 53
  Escherichia coli ECRC101 OKFHMN_08615 adrA diguanylate cyclase AdrA insig. 39 53
  Escherichia coli ECRC101 MCAODC_27840 adrA diguanylate cyclase AdrA insig. 39 53
  Escherichia coli ECRC102 NIAGMN_06670 adrA diguanylate cyclase AdrA insig. 39 53
  Escherichia coli ECRC98 JDDGAC_12270 adrA diguanylate cyclase AdrA no data 39 53
  Escherichia coli ECRC99 KEDOAH_19350 adrA diguanylate cyclase AdrA no data 39 53
  Desulfovibrio vulgaris Miyazaki F DvMF_2758 diguanylate cyclase with PAS/PAC sensor (RefSeq) insig. 38 65
  Escherichia coli BL21 ECD_00332 diguanylate cyclase, cellulose regualtor insig. 39 53
  Escherichia coli ECOR38 HEPCGN_07255 adrA diguanylate cyclase AdrA cofit 39 53
  Escherichia coli Nissle 1917 ECOLIN_RS02340 diguanylate cyclase AdrA insig. 39 53
  Escherichia coli BW25113 b0385 yaiC predicted diguanylate cyclase (NCBI) strong 39 53
  Escherichia fergusonii Becca EFB2_03671 putative diguanylate cyclase DgcC insig. 39 53
  Pseudomonas fluorescens SBW25 PFLU_RS00425 diguanylate cyclase cofit 44 48
  Pseudomonas fluorescens SBW25-INTG PFLU_RS00425 diguanylate cyclase sig. 44 48
  Pseudomonas stutzeri RCH2 Psest_0202 diguanylate cyclase (GGDEF) domain insig. 43 55
  Herbaspirillum seropedicae SmR1 HSERO_RS15125 diguanylate cyclase insig. 40 55
  Desulfovibrio vulgaris Miyazaki F DvMF_3203 diguanylate cyclase (RefSeq) cofit 29 92
  Shewanella sp. ANA-3 Shewana3_3851 diguanylate cyclase (RefSeq) cofit 42 51
  Rhodospirillum rubrum S1H Rru_A3391 Putative diguanylate cyclase (GGDEF domain) (NCBI) insig. 41 51
  Azospirillum sp. SherDot2 MPMX19_01660 Response regulator PleD insig. 44 51
  Acidovorax sp. GW101-3H11 Ac3H11_3582 diguanylate cyclase (GGDEF domain) insig. 41 52
  Pseudomonas syringae pv. syringae B728a Psyr_0088 PAS:GGDEF insig. 40 56
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0088 PAS:GGDEF insig. 40 56
  Pseudomonas fluorescens GW456-L13 PfGW456L13_588 GGDEF domain protein insig. 44 48
  Rhodanobacter denitrificans MT42 LRK55_RS00270 sensor domain-containing diguanylate cyclase cofit 35 67
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS00530 sensor domain-containing diguanylate cyclase insig. 35 67
  Pseudomonas fluorescens FW300-N2E3 AO353_21315 histidine kinase insig. 41 52
  Paraburkholderia sabiae LMG 24235 QEN71_RS14650 diguanylate cyclase no data 38 58
  Shewanella amazonensis SB2B Sama_2871 response regulator (RefSeq) insig. 34 69
  Rhodanobacter denitrificans MT42 LRK55_RS17540 ligand-binding sensor domain-containing diguanylate cyclase insig. 42 53
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS17315 ligand-binding sensor domain-containing diguanylate cyclase insig. 42 53
  Pseudomonas putida KT2440 PP_1155 YaiC/YhcK/ArdA family protein sig. 40 52
  Desulfovibrio vulgaris Hildenborough JW710 DVU3068 GAF domain/sensory box/EAL domain protein (TIGR) insig. 39 59
  Rhodanobacter denitrificans MT42 LRK55_RS01975 GGDEF domain-containing protein insig. 40 51
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS02220 GGDEF domain-containing protein insig. 40 51
  Acidovorax sp. GW101-3H11 Ac3H11_3597 hypothetical protein insig. 41 55
  Magnetospirillum magneticum AMB-1 AMB_RS04735 diguanylate cyclase cofit 40 56
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02129 diguanylate cyclase (GGDEF) domain-containing protein insig. 40 54
  Paraburkholderia graminis OAS925 ABIE53_006009 two-component system NtrC family sensor kinase insig. 40 50
  Rhodanobacter sp. FW510-T8 OKGIIK_09270 Diguanylate cyclase insig. 42 50
  Pseudomonas simiae WCS417 PS417_00435 DeoR faimly transcriptional regulator insig. 44 48
  Marinobacter adhaerens HP15 HP15_4072 diguanylate cyclase with PAS/PAC sensor insig. 37 60
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1881 GGDEF domain protein insig. 42 48
  Pseudomonas sp. RS175 PFR28_04630 hypothetical protein insig. 39 54
  Pseudomonas sp. S08-1 OH686_21185 PAS/PAC domain insig. 33 70
  Alteromonas macleodii MIT1002 MIT1002_01366 Diguanylate cyclase DosC insig. 42 54
  Desulfovibrio vulgaris Miyazaki F DvMF_2637 diguanylate cyclase with extracellular sensor (RefSeq) insig. 41 52
  Shewanella amazonensis SB2B Sama_3210 GGDEF domain-containing protein (RefSeq) strong 41 52
  Azospirillum brasilense Sp245 AZOBR_RS16180 diguanylate cyclase strong 41 53