| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Xanthomonas campestris pv. campestris strain 8004 | 1.0 | Xcc-8004.2952.1 | | transcriptional regulator, Crp/Fnr family | 1.0 | Xcc-8004.3981.1 | | Methylisocitrate lyase (EC 4.1.3.30) | 0.52 | 11 |
| Azospirillum brasilense Sp245 | 0.35 | AZOBR_RS01145 | | Crp/Fnr family transcriptional regulator | 0.27 | AZOBR_RS27785 | | carboxyvinyl-carboxyphosphonate phosphorylmutase | low | > 97 |
| Azospirillum sp. SherDot2 | 0.35 | MPMX19_00212 | | Nitrogen fixation regulation protein FixK | 0.28 | MPMX19_04657 | | 2,3-dimethylmalate lyase | low | > 112 |
| Rhodospirillum rubrum S1H | 0.29 | Rru_A3322 | | Transcriptional Regulator, Crp/Fnr family (NCBI) | 0.39 | Rru_A2320 | | Ankyrin (NCBI) | low | > 58 |
| Herbaspirillum seropedicae SmR1 | 0.26 | HSERO_RS16020 | | transcriptional regulator | 0.74 | HSERO_RS15660 | | 2-methylisocitrate lyase | — | — |
| Pseudomonas stutzeri RCH2 | 0.26 | Psest_2538 | | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | 0.72 | Psest_2321 | | methylisocitrate lyase | low | > 67 |
| Ralstonia solanacearum UW163 | 0.25 | UW163_RS13110 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.76 | UW163_RS11055 | | methylisocitrate lyase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.25 | RALBFv3_RS15650 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.76 | RALBFv3_RS02670 | | methylisocitrate lyase | low | > 76 |
| Ralstonia solanacearum PSI07 | 0.25 | RPSI07_RS17705 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.77 | RPSI07_RS14645 | | methylisocitrate lyase | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.25 | RS_RS06430 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.77 | RS_RS10050 | | methylisocitrate lyase | low | > 80 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.25 | Psyr_3425 | | Cyclic nucleotide-binding:Bacterial regulatory protein, Crp | 0.71 | Psyr_2085 | | methylisocitrate lyase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.25 | Psyr_3425 | | Cyclic nucleotide-binding:Bacterial regulatory protein, Crp | 0.71 | Psyr_2085 | | methylisocitrate lyase | low | > 86 |
| Pseudomonas fluorescens FW300-N2E2 | 0.25 | Pf6N2E2_2323 | | Fumarate and nitrate reduction regulatory protein | 0.71 | Pf6N2E2_6061 | | Methylisocitrate lyase (EC 4.1.3.30) (from data) | low | > 103 |
| Ralstonia sp. UNC404CL21Col | 0.25 | ABZR87_RS11180 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.76 | ABZR87_RS14590 | | methylisocitrate lyase | low | > 80 |
| Pseudomonas sp. RS175 | 0.25 | PFR28_01079 | | Transcriptional activator protein Anr | 0.71 | PFR28_02928 | | 2-methylisocitrate lyase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.24 | Pf1N1B4_3867 | | Fumarate and nitrate reduction regulatory protein | 0.71 | Pf1N1B4_3819 | | Methylisocitrate lyase (EC 4.1.3.30) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.24 | AO356_02485 | | transcriptional regulator | 0.71 | AO356_20865 | | 2-methylisocitrate lyase | low | > 104 |
| Kangiella aquimarina DSM 16071 | 0.24 | B158DRAFT_1982 | | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | 0.61 | B158DRAFT_1343 | | methylisocitrate lyase | low | > 40 |
| Pseudomonas fluorescens GW456-L13 | 0.24 | PfGW456L13_4071 | | Fumarate and nitrate reduction regulatory protein | 0.72 | PfGW456L13_4118 | | Methylisocitrate lyase (EC 4.1.3.30) | low | > 87 |
| Acidovorax sp. GW101-3H11 | 0.24 | Ac3H11_975 | | transcriptional regulator, Crp/Fnr family | 0.28 | Ac3H11_2326 | | Methylisocitrate lyase (EC 4.1.3.30) | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.24 | PFLU_RS22395 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.72 | PFLU_RS22690 | | methylisocitrate lyase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.24 | PFLU_RS22395 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.72 | PFLU_RS22690 | | methylisocitrate lyase | low | > 109 |
| Pseudomonas simiae WCS417 | 0.24 | PS417_20785 | | transcriptional regulator | 0.72 | PS417_21080 | | 2-methylisocitrate lyase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.24 | QEN71_RS17975 | | helix-turn-helix domain-containing protein | 0.73 | QEN71_RS17555 | | methylisocitrate lyase | low | > 153 |
| Pseudomonas fluorescens FW300-N2E3 | 0.24 | AO353_00660 | | transcriptional regulator | 0.71 | AO353_00900 | | 2-methylisocitrate lyase | 0.43 | 21 |
| Cupriavidus basilensis FW507-4G11 | 0.24 | RR42_RS12875 | | transcriptional regulator | 0.75 | RR42_RS11260 | | Methylisocitrate lyase (EC 4.1.3.30) (from data) | low | > 128 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.24 | GFF4142 | | transcriptional regulator, Crp/Fnr family | 0.31 | GFF3032 | | Methylisocitrate lyase (EC 4.1.3.30) | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.24 | H281DRAFT_01640 | | transcriptional regulator, Crp/Fnr family | 0.29 | H281DRAFT_02892 | | carboxyvinyl-carboxyphosphonate phosphorylmutase | low | > 103 |
| Pseudomonas sp. S08-1 | 0.23 | OH686_02245 | | Fumarate and nitrate reduction regulatory protein | 0.82 | OH686_01690 | | methylisocitrate lyase | low | > 80 |
| Dinoroseobacter shibae DFL-12 | 0.23 | Dshi_0660 | | transcriptional regulator, Crp/Fnr family (RefSeq) | 0.28 | Dshi_0689 | | isocitrate lyase family protein (RefSeq) | low | > 64 |
| Pseudomonas putida KT2440 | 0.23 | PP_4265 | | DNA-binding transcriptional dual regulator | 0.71 | PP_2334 | | 2-methylisocitrate lyase | low | > 96 |
| Escherichia coli ECRC98 | 0.23 | JDDGAC_04785 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | 0.71 | JDDGAC_12555 | prpB | methylisocitrate lyase | low | > 86 |
| Escherichia coli ECRC62 | 0.23 | BNILDI_18090 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | 0.71 | BNILDI_23190 | prpB | methylisocitrate lyase | low | > 75 |
| Shewanella amazonensis SB2B | 0.23 | Sama_1799 | | fumarate/nitrate reduction transcriptional regulator (RefSeq) | 0.58 | Sama_3294 | prpB | 2-methylisocitrate lyase (RefSeq) | low | > 62 |
| Escherichia coli ECRC99 | 0.23 | KEDOAH_26530 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | 0.71 | KEDOAH_19065 | prpB | methylisocitrate lyase | — | — |
| Escherichia fergusonii Becca | 0.23 | EFB2_02593 | | Fumarate and nitrate reduction regulatory protein | 0.71 | EFB2_03706 | | 2-methylisocitrate lyase | low | > 86 |
| Escherichia coli ECOR38 | 0.23 | HEPCGN_25925 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | 0.71 | HEPCGN_07485 | prpB | methylisocitrate lyase | low | > 87 |
| Escherichia coli Nissle 1917 | 0.23 | ECOLIN_RS08005 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.71 | ECOLIN_RS02150 | | methylisocitrate lyase | low | > 55 |
| Escherichia coli BW25113 | 0.23 | b1334 | fnr | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | 0.71 | b0331 | prpB | 2-methylisocitrate lyase (NCBI) | low | > 76 |
| Escherichia coli ECRC100 | 0.23 | OKFHMN_02240 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | 0.71 | OKFHMN_08900 | prpB | methylisocitrate lyase | low | > 80 |
| Escherichia coli ECRC102 | 0.23 | NIAGMN_26410 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | 0.71 | NIAGMN_06955 | prpB | methylisocitrate lyase | — | — |
| Escherichia coli ECOR27 | 0.23 | NOLOHH_19940 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | 0.71 | NOLOHH_01775 | prpB | methylisocitrate lyase | low | > 75 |
| Shewanella loihica PV-4 | 0.23 | Shew_1993 | | fumarate/nitrate reduction transcriptional regulator (RefSeq) | 0.64 | Shew_1820 | prpB | 2-methylisocitrate lyase (RefSeq) | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.23 | OHPLBJKB_02348 | | Fumarate and nitrate reduction regulatory protein | 0.71 | OHPLBJKB_03339 | | 2-methylisocitrate lyase | low | > 73 |
| Paraburkholderia graminis OAS925 | 0.22 | ABIE53_004332 | | CRP/FNR family transcriptional regulator | 0.29 | ABIE53_005902 | | 2-methylisocitrate lyase-like PEP mutase family enzyme | low | > 113 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.22 | GFF2656 | | Fumarate and nitrate reduction regulatory protein | 0.69 | GFF4263 | | Methylisocitrate lyase (EC 4.1.3.30) | low | > 78 |
| Escherichia coli ECRC101 | 0.22 | MCAODC_16030 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | 0.71 | MCAODC_28130 | prpB | methylisocitrate lyase | low | > 87 |
| Dickeya dianthicola ME23 | 0.22 | DZA65_RS11360 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.15 | DZA65_RS07470 | | phosphoenolpyruvate mutase | low | > 75 |
| Vibrio cholerae E7946 ATCC 55056 | 0.22 | CSW01_07190 | | transcriptional regulator FNR | 0.62 | CSW01_06735 | | methylisocitrate lyase | low | > 62 |
| Dickeya dianthicola 67-19 | 0.22 | HGI48_RS10900 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.15 | HGI48_RS06990 | | phosphoenolpyruvate mutase | low | > 71 |
| Castellaniella sp019104865 MT123 | 0.22 | ABCV34_RS06835 | | helix-turn-helix domain-containing protein | 0.78 | ABCV34_RS01670 | | methylisocitrate lyase | low | > 48 |
| Alteromonas macleodii MIT1002 | 0.22 | MIT1002_02137 | | Fumarate and nitrate reduction regulatory protein | 0.62 | MIT1002_03129 | | Methylisocitrate lyase | low | > 70 |
| Marinobacter adhaerens HP15 | 0.21 | HP15_634 | | transcriptional regulator, Crp/Fnr family | 0.61 | HP15_1932 | | methylisocitrate lyase 2 | — | — |
| Shewanella oneidensis MR-1 | 0.21 | SO2356 | etrA | electron transport regulator a (NCBI ptt file) | 0.58 | SO0345 | prpB | methylisocitrate lyase (NCBI ptt file) | low | > 76 |
| Lysobacter sp. OAE881 | 0.21 | ABIE51_RS03805 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.62 | ABIE51_RS06015 | | methylisocitrate lyase | low | > 62 |
| Shewanella sp. ANA-3 | 0.21 | Shewana3_2115 | | fumarate/nitrate reduction transcriptional regulator (RefSeq) | 0.58 | Shewana3_3825 | prpB | 2-methylisocitrate lyase (RefSeq) | — | — |
| Variovorax sp. OAS795 | 0.18 | ABID97_RS06620 | | Crp/Fnr family transcriptional regulator | 0.29 | ABID97_RS18835 | | oxaloacetate decarboxylase | low | > 91 |
Not shown: 21 genomes with orthologs for Xcc-8004.2952.1 only; 9 genomes with orthologs for Xcc-8004.3981.1 only