| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rhodopseudomonas palustris CGA009 | 1.0 | TX73_019115 | | ABC transporter permease | 1.0 | TX73_016270 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.66 | 5 |
| Bosea sp. OAE506 | 0.68 | ABIE41_RS23970 | | ABC transporter permease | 0.79 | ABIE41_RS18235 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 77 |
| Rhizobium sp. OAE497 | 0.61 | ABIE40_RS00625 | | ABC transporter permease | 0.75 | ABIE40_RS08865 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 107 |
| Agrobacterium fabrum C58 | 0.59 | Atu0189 | | ABC transporter, membrane spanning protein (peptide) | 0.72 | Atu1364 | | ATP-dependent Clp protease, ATP-binding subunit | low | > 89 |
| Sinorhizobium meliloti 1021 | 0.59 | SMc02830 | | ABC transporter permease | 0.73 | SMc02109 | | ATP-dependent Clp protease ATP-binding subunit protein | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.58 | Pf6N2E2_582 | | Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) | 0.55 | Pf6N2E2_292 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.58 | AO356_24455 | | ABC transporter permease | 0.55 | AO356_22150 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 104 |
| Pseudomonas putida KT2440 | 0.58 | PP_4149 | | putative inner membrane ABC transporter permease protein | 0.56 | PP_4008 | | ATP-dependent serine protease | low | > 96 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.58 | Psyr_1756 | | Binding-protein-dependent transport systems inner membrane component | 0.56 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.58 | Psyr_1756 | | Binding-protein-dependent transport systems inner membrane component | 0.56 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Azospirillum sp. SherDot2 | 0.58 | MPMX19_02170 | | Inner membrane ABC transporter permease protein YejE | 0.70 | MPMX19_00503 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 112 |
| Pseudomonas fluorescens GW456-L13 | 0.58 | PfGW456L13_3345 | | Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) | 0.55 | PfGW456L13_2646 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 87 |
| Pseudomonas sp. RS175 | 0.58 | PFR28_01547 | | Inner membrane ABC transporter permease protein YejE | 0.56 | PFR28_02613 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.57 | Pf1N1B4_4591 | | Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) | 0.55 | Pf1N1B4_4055 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pseudomonas fluorescens SBW25 | 0.57 | PFLU_RS12885 | | ABC transporter permease | 0.56 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.57 | PFLU_RS12885 | | ABC transporter permease | 0.56 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.57 | AO353_23465 | | ABC transporter permease | 0.55 | AO353_27675 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 101 |
| Pseudomonas sp. S08-1 | 0.57 | OH686_03610 | | ABC transporter, permease protein 2 | 0.55 | OH686_00235 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.57 | Psest_2065 | | ABC-type uncharacterized transport system, permease component | 0.56 | Psest_2027 | | ATP-dependent Clp protease ATP-binding subunit clpA | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.57 | CSW01_17175 | | ABC transporter permease | 0.54 | CSW01_05805 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 62 |
| Pseudomonas simiae WCS417 | 0.56 | PS417_12195 | | ABC transporter permease | 0.56 | PS417_16510 | | Clp protease ClpX | 0.28 | 60 |
| Marinobacter adhaerens HP15 | 0.56 | HP15_1809 | | peptide ABC transporter, permease protein | 0.57 | HP15_2080 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.31 | 70 |
| Rhodospirillum rubrum S1H | 0.54 | Rru_A3168 | | Binding-protein-dependent transport systems inner membrane component (NCBI) | 0.70 | Rru_A2109 | | ATP-dependent Clp protease ATP-binding subunit ClpA (NCBI) | 0.80 | 12 |
| Escherichia coli ECOR38 | 0.54 | HEPCGN_22645 | yejE | Inner membrane ABC transporter permease protein YejE | 0.55 | HEPCGN_22900 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 87 |
| Escherichia coli ECRC62 | 0.54 | BNILDI_13875 | yejE | Inner membrane ABC transporter permease protein YejE | 0.55 | BNILDI_20435 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 75 |
| Escherichia coli BL21 | 0.54 | ECD_02109 | | microcin C ABC transporter permease | 0.55 | ECD_00887 | | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity | low | > 61 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.54 | OHPLBJKB_01530 | | Inner membrane ABC transporter permease protein YejE | 0.55 | OHPLBJKB_02786 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 73 |
| Escherichia coli BW25113 | 0.54 | b2179 | yejE | predicted oligopeptide transporter subunit (NCBI) | 0.55 | b0882 | clpA | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | low | > 76 |
| Escherichia fergusonii Becca | 0.54 | EFB2_01677 | | Inner membrane ABC transporter permease protein YejE | 0.55 | EFB2_03179 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Escherichia coli Nissle 1917 | 0.54 | ECOLIN_RS12740 | | ABC transporter permease | 0.55 | ECOLIN_RS04695 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pectobacterium carotovorum WPP14 | 0.54 | HER17_RS12930 | | microcin C ABC transporter permease | 0.56 | HER17_RS12400 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 75 |
| Escherichia coli ECOR27 | 0.54 | NOLOHH_14955 | yejE | Inner membrane ABC transporter permease protein YejE | 0.55 | NOLOHH_22180 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.54 | GFF3757 | | Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) | 0.55 | GFF4901 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 78 |
| Escherichia coli ECRC102 | 0.54 | NIAGMN_21145 | yejE | Inner membrane ABC transporter permease protein YejE | 0.55 | NIAGMN_03825 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli ECRC100 | 0.54 | OKFHMN_23380 | yejE | Inner membrane ABC transporter permease protein YejE | 0.55 | OKFHMN_05785 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 80 |
| Escherichia coli ECRC101 | 0.54 | MCAODC_14430 | yejE | Inner membrane ABC transporter permease protein YejE | 0.55 | MCAODC_25000 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 87 |
| Escherichia coli ECRC98 | 0.54 | JDDGAC_27340 | yejE | Inner membrane ABC transporter permease protein YejE | 0.55 | JDDGAC_09420 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Escherichia coli ECRC99 | 0.54 | KEDOAH_04805 | yejE | Inner membrane ABC transporter permease protein YejE | 0.55 | KEDOAH_22125 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Magnetospirillum magneticum AMB-1 | 0.54 | AMB_RS22190 | | ABC transporter permease | 0.69 | AMB_RS05705 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Klebsiella michiganensis M5al | 0.53 | BWI76_RS19790 | | putative binding-protein-dependent transporter | 0.55 | BWI76_RS09615 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 92 |
| Serratia liquefaciens MT49 | 0.53 | IAI46_17325 | | ABC transporter permease subunit | 0.55 | IAI46_08515 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Erwinia tracheiphila SCR3 | 0.52 | LU632_RS17575 | | microcin C ABC transporter permease | 0.54 | LU632_RS09705 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 74 |
| Dickeya dianthicola 67-19 | 0.52 | HGI48_RS09220 | | ABC transporter permease subunit | 0.56 | HGI48_RS09575 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 71 |
| Dickeya dadantii 3937 | 0.52 | DDA3937_RS09180 | | ABC transporter permease subunit | 0.56 | DDA3937_RS09560 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.55 | 56 |
| Enterobacter asburiae PDN3 | 0.51 | EX28DRAFT_0382 | | ABC-type uncharacterized transport system, permease component | 0.55 | EX28DRAFT_2050 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | low | > 76 |
| Phaeobacter inhibens DSM 17395 | 0.51 | PGA1_c30160 | | ABC transporter permease protein | 0.69 | PGA1_c25150 | | ATP-dependent Clp protease ATP-binding subunit | low | > 62 |
| Dickeya dianthicola ME23 | 0.51 | DZA65_RS09525 | | ABC transporter permease subunit | 0.56 | DZA65_RS09885 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 75 |
| Pantoea sp. MT58 | 0.51 | IAI47_06605 | | ABC transporter permease subunit | 0.54 | IAI47_12945 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 76 |
| Dinoroseobacter shibae DFL-12 | 0.50 | Dshi_0657 | | binding-protein-dependent transport systems inner membrane component (RefSeq) | 0.69 | Dshi_2939 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | low | > 64 |
| Enterobacter sp. TBS_079 | 0.50 | MPMX20_03145 | | Inner membrane ABC transporter permease protein YejE | 0.55 | MPMX20_01544 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 85 |
| Rahnella sp. WP5 | 0.48 | EX31_RS19140 | | ABC transporter permease subunit | 0.55 | EX31_RS18560 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 89 |
| Acinetobacter radioresistens SK82 | 0.47 | MPMX26_02271 | | Inner membrane ABC transporter permease protein YejE | 0.53 | MPMX26_01284 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 36 |
| Variovorax sp. SCN45 | 0.45 | GFF227 | | ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) | 0.55 | GFF341 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 127 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.45 | DVU2386 | oppC | ABC transporter, permease protein (TIGR) | 0.47 | DVU1602 | clpA | ATP-dependent Clp protease, ATP-binding subunit ClpA (TIGR) | low | > 55 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.44 | GFF4337 | | Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) | 0.56 | GFF4521 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 90 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.44 | H281DRAFT_00562 | | microcin C transport system permease protein | 0.56 | H281DRAFT_04082 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.44 | BPHYT_RS12375 | | peptide ABC transporter permease | 0.57 | BPHYT_RS15710 | | ATP-dependent Clp protease ATP-binding protein | low | > 109 |
| Ralstonia sp. UNC404CL21Col | 0.43 | ABZR87_RS10690 | | ABC transporter permease | 0.56 | ABZR87_RS00435 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.43 | RR42_RS13375 | | peptide ABC transporter permease | 0.56 | RR42_RS17105 | | Clp protease ClpX | low | > 128 |
| Ralstonia solanacearum UW163 | 0.43 | UW163_RS12515 | | ABC transporter permease | 0.56 | UW163_RS08860 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.43 | RALBFv3_RS15045 | | ABC transporter permease | 0.56 | RALBFv3_RS04810 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia solanacearum GMI1000 | 0.43 | RS_RS05860 | | ABC transporter permease | 0.56 | RS_RS12370 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia solanacearum PSI07 | 0.43 | RPSI07_RS18330 | | ABC transporter permease | 0.55 | RPSI07_RS12575 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 81 |
| Paraburkholderia sabiae LMG 24235 | 0.43 | QEN71_RS06180 | | ABC transporter permease | 0.56 | QEN71_RS03005 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 153 |
| Acidovorax sp. GW101-3H11 | 0.42 | Ac3H11_2909 | | Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) | 0.55 | Ac3H11_2456 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 79 |
| Herbaspirillum seropedicae SmR1 | 0.41 | HSERO_RS17135 | | peptide ABC transporter permease | 0.57 | HSERO_RS07030 | | ATP-dependent Clp protease ATP-binding protein | — | — |
| Variovorax sp. OAS795 | 0.41 | ABID97_RS16510 | | ABC transporter permease | 0.55 | ABID97_RS16910 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 91 |
Not shown: 1 genomes with orthologs for TX73_019115 only; 22 genomes with orthologs for TX73_016270 only