Conservation of cofitness between TX73_015860 and TX73_003075 in Rhodopseudomonas palustris CGA009

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodopseudomonas palustris CGA009 1.0 TX73_015860 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA 1.0 TX73_003075 (deoxy)nucleoside triphosphate pyrophosphohydrolase 0.52 11
Bosea sp. OAE506 0.67 ABIE41_RS17730 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA 0.74 ABIE41_RS05790 8-oxo-dGTP diphosphatase MutT low > 77
Agrobacterium fabrum C58 0.62 Atu1103 rRNA-adenine N6,N6-dimethyltransferase 0.71 Atu3516 MutT family NTP pyrophosphatase low > 89
Rhizobium sp. OAE497 0.61 ABIE40_RS06390 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA 0.71 ABIE40_RS17375 8-oxo-dGTP diphosphatase MutT low > 107
Sinorhizobium meliloti 1021 0.60 SMc00579 dimethyladenosine transferase 0.71 SMc02448 mutator protein 7,8-dihydro-8-oxoguanine-triphosphatase low > 103
Azospirillum brasilense Sp245 0.54 AZOBR_RS16340 16S rRNA methyltransferase 0.71 AZOBR_RS02845 NTP pyrophosphohydrolase
Dinoroseobacter shibae DFL-12 0.53 Dshi_1185 dimethyladenosine transferase (RefSeq) 0.70 Dshi_3564 mutator MutT protein (RefSeq) low > 64
Rhodospirillum rubrum S1H 0.53 Rru_A0431 16S rRNA dimethylase (NCBI) 0.71 Rru_A0393 NUDIX hydrolase (NCBI)
Phaeobacter inhibens DSM 17395 0.52 PGA1_c19860 dimethyladenosine transferase KsgA 0.71 PGA1_c34610 putative mutator MutT protein low > 62
Azospirillum sp. SherDot2 0.50 MPMX19_01514 Ribosomal RNA small subunit methyltransferase A 0.65 MPMX19_00121 CTP pyrophosphohydrolase
Sphingomonas koreensis DSMZ 15582 0.49 Ga0059261_0879 ribosomal RNA small subunit methyltransferase A 0.53 Ga0059261_3599 ADP-ribose pyrophosphatase low > 68
Caulobacter crescentus NA1000 0.49 CCNA_01757 dimethyladenosine transferase 0.66 CCNA_00876 7,8-dihydro-8-oxoguanine-triphosphatase low > 66
Caulobacter crescentus NA1000 Δfur 0.49 CCNA_01757 dimethyladenosine transferase 0.66 CCNA_00876 7,8-dihydro-8-oxoguanine-triphosphatase low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.43 A4249_RS06760 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA 0.70 A4249_RS13540 (deoxy)nucleoside triphosphate pyrophosphohydrolase
Herbaspirillum seropedicae SmR1 0.31 HSERO_RS03540 dimethyladenosine transferase 0.32 HSERO_RS01740 CTP pyrophosphohydrolase low > 78
Kangiella aquimarina DSM 16071 0.29 B158DRAFT_0788 dimethyladenosine transferase 0.32 B158DRAFT_2132 mutator mutT protein low > 40
Shewanella loihica PV-4 0.29 Shew_0879 ksgA dimethyladenosine transferase (RefSeq) 0.39 Shew_3444 mutator MutT protein (RefSeq)
Shewanella sp. ANA-3 0.29 Shewana3_3209 ksgA dimethyladenosine transferase (RefSeq) 0.35 Shewana3_0413 mutator MutT protein (RefSeq)
Shewanella amazonensis SB2B 0.29 Sama_2819 ksgA dimethyladenosine transferase (RefSeq) 0.37 Sama_0363 mutator MutT protein (RefSeq)
Shewanella oneidensis MR-1 0.28 SO3639 ksgA dimethyladenosine transferase (NCBI ptt file) 0.35 SO0410 mutT mutator mutT protein (NCBI ptt file) low > 76
Escherichia coli ECRC100 0.27 OKFHMN_10835 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA 0.32 OKFHMN_26850 nudG CTP pyrophosphohydrolase
Escherichia coli ECRC62 0.27 BNILDI_08425 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA 0.31 BNILDI_16150 nudG CTP pyrophosphohydrolase low > 75
Escherichia coli ECOR38 0.27 HEPCGN_08825 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA 0.32 HEPCGN_05215 nudG CTP pyrophosphohydrolase low > 87
Escherichia coli BW25113 0.27 b0051 ksgA dimethyladenosine transferase (NCBI) 0.31 b1759 nudG pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase (NCBI)
Escherichia coli BL21 0.27 ECD_00055 16S rRNA m(6)A1518, m(6)A1519 dimethyltransferase, SAM-dependent 0.31 ECD_01728 CTP pyrophosphohydrolase; also hydrolyzes 2-hydroxy-dATP, 8-hydroxy-dGTP, 5-hydroxy-CTP, dCTP and 5-methyl-dCTP
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_03605 Ribosomal RNA small subunit methyltransferase A 0.31 OHPLBJKB_01973 CTP pyrophosphohydrolase low > 73
Escherichia coli ECOR27 0.27 NOLOHH_03180 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA 0.31 NOLOHH_17365 nudG CTP pyrophosphohydrolase
Escherichia coli ECRC101 0.27 MCAODC_01350 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA 0.32 MCAODC_18560 nudG CTP pyrophosphohydrolase low > 87
Escherichia coli ECRC98 0.27 JDDGAC_14430 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA 0.32 JDDGAC_01425 nudG CTP pyrophosphohydrolase low > 86
Paraburkholderia bryophila 376MFSha3.1 0.27 H281DRAFT_04640 dimethyladenosine transferase 0.31 H281DRAFT_06251 8-oxo-dGTPase (EC 3.6.1.55) low > 103
Escherichia coli ECRC102 0.27 NIAGMN_08685 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA 0.32 NIAGMN_01215 nudG CTP pyrophosphohydrolase
Escherichia coli ECRC99 0.27 KEDOAH_17320 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA 0.32 KEDOAH_01260 nudG CTP pyrophosphohydrolase
Escherichia fergusonii Becca 0.27 EFB2_03992 Ribosomal RNA small subunit methyltransferase A 0.28 EFB2_03948 8-oxo-dGTP diphosphatase low > 86
Escherichia coli Nissle 1917 0.27 ECOLIN_RS00285 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA 0.32 ECOLIN_RS09800 CTP pyrophosphohydrolase
Paraburkholderia graminis OAS925 0.27 ABIE53_000800 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase 0.30 ABIE53_003600 8-oxo-dGTP diphosphatase low > 113
Burkholderia phytofirmans PsJN 0.27 BPHYT_RS03305 ribosomal RNA small subunit methyltransferase A 0.30 BPHYT_RS17175 7,8-dihydro-8-oxoguanine-triphosphatase
Klebsiella michiganensis M5al 0.27 BWI76_RS04520 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase 0.30 BWI76_RS04805 8-oxo-dGTP diphosphatase
Pantoea sp. MT58 0.27 IAI47_16085 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA 0.35 IAI47_15885 8-oxo-dGTP diphosphatase MutT low > 76
Paraburkholderia sabiae LMG 24235 0.27 QEN71_RS02130 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA 0.31 QEN71_RS27335 NUDIX domain-containing protein low > 153
Enterobacter asburiae PDN3 0.26 EX28DRAFT_3645 ribosomal RNA small subunit methyltransferase A 0.30 EX28DRAFT_3694 mutator mutT protein low > 76
Dickeya dadantii 3937 0.26 DDA3937_RS18265 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA 0.32 DDA3937_RS17995 8-oxo-dGTP diphosphatase MutT low > 74
Pectobacterium carotovorum WPP14 0.26 HER17_RS02960 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA 0.34 HER17_RS03210 8-oxo-dGTP diphosphatase MutT 0.59 9
Serratia liquefaciens MT49 0.26 IAI46_03245 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA 0.35 IAI46_03490 8-oxo-dGTP diphosphatase MutT
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.26 GFF190 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) 0.33 GFF3489 5-methyl-dCTP pyrophosphohydrolase (EC 3.6.1.-) low > 78
Rahnella sp. WP5 0.26 EX31_RS03780 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA 0.32 EX31_RS03555 8-oxo-dGTP diphosphatase MutT
Dickeya dianthicola ME23 0.26 DZA65_RS19340 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA 0.30 DZA65_RS19075 8-oxo-dGTP diphosphatase MutT
Dickeya dianthicola 67-19 0.26 HGI48_RS18200 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA 0.31 HGI48_RS17930 8-oxo-dGTP diphosphatase MutT
Alteromonas macleodii MIT1002 0.26 MIT1002_00781 Ribosomal RNA small subunit methyltransferase A 0.31 MIT1002_03016 8-oxo-dGTP diphosphatase low > 70
Acidovorax sp. GW101-3H11 0.26 Ac3H11_4327 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) 0.29 Ac3H11_4760 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-)
Vibrio cholerae E7946 ATCC 55056 0.26 CSW01_02325 ribosomal RNA small subunit methyltransferase A 0.35 CSW01_12120 8-oxo-dGTP diphosphatase MutT
Enterobacter sp. TBS_079 0.26 MPMX20_00747 Ribosomal RNA small subunit methyltransferase A 0.32 MPMX20_00792 8-oxo-dGTP diphosphatase low > 85
Rhodanobacter denitrificans MT42 0.26 LRK55_RS12040 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA 0.37 LRK55_RS03740 NUDIX domain-containing protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.26 LRK54_RS12305 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA 0.37 LRK54_RS03970 NUDIX domain-containing protein low > 59
Bifidobacterium breve UCC2003 0.25 BBR_RS20420 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA 0.19 BBR_RS10695 (deoxy)nucleoside triphosphate pyrophosphohydrolase low > 34
Variovorax sp. OAS795 0.24 ABID97_RS02525 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA 0.27 ABID97_RS23475 NUDIX domain-containing protein low > 91
Erwinia tracheiphila SCR3 0.24 LU632_RS02730 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA 0.31 LU632_RS03000 mutT 8-oxo-dGTP diphosphatase MutT low > 74
Variovorax sp. SCN45 0.24 GFF3251 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) 0.30 GFF2500 Mutator MutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) low > 127
Desulfovibrio vulgaris Hildenborough JW710 0.23 DVU1797 ksgA dimethyladenosine transferase (TIGR) 0.30 DVU3051 mutT mutator mutT protein (TIGR) low > 55
Pontibacter actiniarum KMM 6156, DSM 19842 0.22 CA264_03850 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase 0.27 CA264_05615 NUDIX hydrolase low > 74
Mycobacterium tuberculosis H37Rv 0.21 Rv1010 Probable dimethyladenosine transferase KsgA (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (high level kasugamycin resistance protein KsgA) (kasugamycin dimethyltransferase) 0.24 Rv1160 Probable mutator protein MutT2 (7,8-dihydro-8-oxoguanine-triphosphatase) (8-oxo-dGTPase) low > 58

Not shown: 42 genomes with orthologs for TX73_015860 only; 0 genomes with orthologs for TX73_003075 only