Conservation of cofitness between TX73_010150 and TX73_001435 in Rhodopseudomonas palustris CGA009

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodopseudomonas palustris CGA009 1.0 TX73_010150 tRNA dihydrouridine(20/20a) synthase DusA 1.0 TX73_001435 ammonium transporter 0.49 12
Bosea sp. OAE506 0.62 ABIE41_RS21285 tRNA dihydrouridine(20/20a) synthase DusA 0.59 ABIE41_RS04755 ammonium transporter low > 77
Caulobacter crescentus NA1000 Δfur 0.58 CCNA_01364 NIFR3-like protein 0.51 CCNA_01399 ammonium transporter/methylammonium transporter low > 67
Caulobacter crescentus NA1000 0.58 CCNA_01364 NIFR3-like protein 0.51 CCNA_01399 ammonium transporter/methylammonium transporter low > 66
Rahnella sp. WP5 0.57 EX31_RS11865 tRNA dihydrouridine(20/20a) synthase DusA 0.40 EX31_RS22320 ammonium transporter AmtB low > 89
Dickeya dadantii 3937 0.57 DDA3937_RS17480 tRNA dihydrouridine(20/20a) synthase DusA 0.36 DDA3937_RS05700 ammonium transporter AmtB low > 74
Dickeya dianthicola ME23 0.57 DZA65_RS18620 tRNA dihydrouridine(20/20a) synthase DusA 0.38 DZA65_RS06070 ammonium transporter AmtB low > 75
Dickeya dianthicola 67-19 0.57 HGI48_RS17540 tRNA dihydrouridine(20/20a) synthase DusA 0.38 HGI48_RS05745 ammonium transporter AmtB low > 71
Pectobacterium carotovorum WPP14 0.56 HER17_RS03680 tRNA dihydrouridine(20/20a) synthase DusA 0.42 HER17_RS15785 ammonium transporter AmtB low > 75
Serratia liquefaciens MT49 0.55 IAI46_22970 tRNA dihydrouridine(20/20a) synthase DusA 0.43 IAI46_05085 ammonium transporter AmtB low > 86
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS18350 tRNA dihydrouridine(20/20a) synthase DusA 0.44 ABZR86_RS09495 ammonium transporter low > 74
Rhodanobacter sp. FW510-T8 0.55 OKGIIK_00625 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.44 OKGIIK_14925 Ammonium transporter 0.55 15
Rhodanobacter denitrificans FW104-10B01 0.55 LRK54_RS05995 tRNA dihydrouridine(20/20a) synthase DusA 0.44 LRK54_RS08110 ammonium transporter low > 59
Pantoea sp. MT58 0.55 IAI47_17865 tRNA dihydrouridine(20/20a) synthase DusA 0.41 IAI47_14580 ammonium transporter AmtB low > 76
Rhodanobacter denitrificans MT42 0.55 LRK55_RS05750 tRNA dihydrouridine(20/20a) synthase DusA 0.44 LRK55_RS07860 ammonium transporter low > 63
Escherichia coli ECRC62 0.55 BNILDI_06330 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.40 BNILDI_22610 amtB ammonium transporter AmtB low > 75
Escherichia coli Nissle 1917 0.55 ECOLIN_RS23355 tRNA dihydrouridine(20/20a) synthase DusA 0.40 ECOLIN_RS02700 ammonium transporter AmtB low > 55
Escherichia coli ECOR38 0.55 HEPCGN_11560 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.40 HEPCGN_06875 amtB ammonium transporter AmtB low > 87
Escherichia coli ECRC98 0.55 JDDGAC_16580 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.40 JDDGAC_11915 amtB ammonium transporter AmtB low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_03994 tRNA-dihydrouridine(20/20a) synthase 0.40 OHPLBJKB_03222 Ammonia channel low > 73
Escherichia coli ECRC99 0.55 KEDOAH_15205 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.40 KEDOAH_19705 amtB ammonium transporter AmtB — —
Rhizobium sp. OAE497 0.55 ABIE40_RS10895 tRNA dihydrouridine(20/20a) synthase DusA 0.51 ABIE40_RS18420 ammonium transporter low > 107
Escherichia coli ECRC100 0.55 OKFHMN_12945 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.40 OKFHMN_08260 amtB ammonium transporter AmtB low > 80
Escherichia coli ECRC102 0.55 NIAGMN_10790 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.40 NIAGMN_06315 amtB ammonium transporter AmtB — —
Escherichia coli ECOR27 0.55 NOLOHH_05195 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.40 NOLOHH_01195 amtB ammonium transporter AmtB low > 75
Escherichia coli BL21 0.54 ECD_03921 tRNA-dihydrouridine synthase A 0.40 ECD_00403 ammonium transporter low > 61
Escherichia coli BW25113 0.54 b4049 dusA tRNA-dihydrouridine synthase A (RefSeq) 0.40 b0451 amtB ammonium transporter (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF1418 tRNA dihydrouridine synthase A (EC 1.-.-.-) 0.40 GFF4368 Ammonium transporter low > 78
Escherichia fergusonii Becca 0.54 EFB2_04556 tRNA-dihydrouridine(20/20a) synthase 0.40 EFB2_03606 Ammonia channel low > 86
Enterobacter sp. TBS_079 0.54 MPMX20_00265 tRNA-dihydrouridine(20/20a) synthase 0.40 MPMX20_01043 Ammonia channel low > 85
Agrobacterium fabrum C58 0.54 Atu1515 hypothetical protein 0.45 Atu2758 ammonium transporter low > 89
Escherichia coli ECRC101 0.54 MCAODC_03455 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.40 MCAODC_27485 amtB ammonium transporter AmtB low > 87
Klebsiella michiganensis M5al 0.54 BWI76_RS01900 tRNA-dihydrouridine synthase A 0.39 BWI76_RS06605 ammonium transporter low > 92
Enterobacter asburiae PDN3 0.54 EX28DRAFT_4263 tRNA dihydrouridine synthase A 0.40 EX28DRAFT_2518 ammonium transporter low > 76
Erwinia tracheiphila SCR3 0.53 LU632_RS23765 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.42 LU632_RS18270 amtB ammonium transporter AmtB low > 74
Xanthomonas campestris pv. campestris strain 8004 0.53 Xcc-8004.5010.1 tRNA dihydrouridine synthase A 0.44 Xcc-8004.249.1 Ammonium transporter low > 74
Lysobacter sp. OAE881 0.53 ABIE51_RS03925 tRNA dihydrouridine(20/20a) synthase DusA 0.48 ABIE51_RS01435 ammonium transporter low > 62
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS17905 tRNA-dihydrouridine synthase A 0.55 HSERO_RS00425 ammonia channel protein low > 78
Marinobacter adhaerens HP15 0.51 HP15_2240 tRNA-dihydrouridine synthase, TIM-barrel, YjbN 0.12 HP15_4007 ammonium transporter low > 73
Pseudomonas putida KT2440 0.51 PP_2169 tRNA-dihydrouridine synthase A 0.40 PP_5233 ammonium transporter AmtB low > 96
Ralstonia solanacearum GMI1000 0.51 RS_RS06510 tRNA dihydrouridine(20/20a) synthase DusA 0.54 RS_RS01690 ammonium transporter low > 80
Pseudomonas syringae pv. syringae B728a 0.50 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase 0.40 Psyr_0189 ammonium transporter low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.50 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase 0.40 Psyr_0189 ammonium transporter low > 86
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS11300 tRNA dihydrouridine(20/20a) synthase DusA 0.55 ABZR87_RS06700 ammonium transporter low > 80
Ralstonia solanacearum UW163 0.49 UW163_RS13175 tRNA dihydrouridine(20/20a) synthase DusA 0.55 UW163_RS02730 ammonia channel protein — —
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS15730 tRNA dihydrouridine(20/20a) synthase DusA 0.55 RALBFv3_RS10850 ammonia channel protein 0.38 10
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS12665 tRNA-dihydrouridine synthase A 0.53 RR42_RS01760 ammonia channel protein low > 128
Pseudomonas fluorescens SBW25 0.49 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA 0.43 PFLU_RS29300 ammonium transporter low > 109
Pseudomonas fluorescens SBW25-INTG 0.49 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA 0.43 PFLU_RS29300 ammonium transporter low > 109
Ralstonia solanacearum PSI07 0.49 RPSI07_RS17630 tRNA dihydrouridine(20/20a) synthase DusA 0.54 RPSI07_RS22460 ammonia channel protein low > 81
Variovorax sp. OAS795 0.49 ABID97_RS13915 tRNA dihydrouridine(20/20a) synthase DusA 0.45 ABID97_RS03635 ammonium transporter low > 91
Pseudomonas simiae WCS417 0.49 PS417_07740 tRNA-dihydrouridine synthase A 0.41 PS417_27615 ammonia channel protein low > 88
Pseudomonas stutzeri RCH2 0.49 Psest_2706 tRNA dihydrouridine synthase A 0.43 Psest_3772 ammonium transporter low > 67
Pseudomonas fluorescens FW300-N1B4 0.48 Pf1N1B4_57 tRNA dihydrouridine synthase A 0.43 Pf1N1B4_2167 Ammonium transporter low > 87
Pseudomonas sp. S08-1 0.48 OH686_22745 tRNA-dihydrouridine(20/20a) synthase 0.43 OH686_13760 Ammonium transporter low > 80
Pseudomonas fluorescens FW300-N2E2 0.48 Pf6N2E2_2257 tRNA dihydrouridine synthase A 0.46 Pf6N2E2_4412 Ammonium transporter low > 103
Hydrogenophaga sp. GW460-11-11-14-LB1 0.48 GFF4791 tRNA dihydrouridine synthase A 0.42 GFF1922 Ammonium transporter low > 90
Acidovorax sp. GW101-3H11 0.48 Ac3H11_2288 tRNA dihydrouridine synthase A 0.47 Ac3H11_3401 Ammonium transporter low > 79
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_02170 tRNA-dihydrouridine synthase A 0.46 AO356_12705 ammonia channel protein low > 104
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_00295 tRNA-dihydrouridine synthase A 0.43 AO353_09070 ammonia channel protein low > 101
Pseudomonas sp. RS175 0.47 PFR28_01143 tRNA-dihydrouridine(20/20a) synthase 0.45 PFR28_04382 Ammonia channel low > 88
Variovorax sp. SCN45 0.47 GFF928 tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.91) 0.44 GFF5119 Ammonium transporter low > 127
Sinorhizobium meliloti 1021 0.46 SMc04235 tRNA-dihydrouridine synthase A 0.48 SMc03807 ammonium transporter low > 103
Castellaniella sp019104865 MT123 0.45 ABCV34_RS04335 tRNA dihydrouridine(20/20a) synthase DusA 0.33 ABCV34_RS04770 ammonium transporter low > 48
Pseudomonas fluorescens GW456-L13 0.44 PfGW456L13_3987 tRNA dihydrouridine synthase A 0.43 PfGW456L13_838 Ammonium transporter low > 87

Not shown: 19 genomes with orthologs for TX73_010150 only; 3 genomes with orthologs for TX73_001435 only