Conservation of cofitness between SMc01428 and SMc02435 in Sinorhizobium meliloti 1021

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sinorhizobium meliloti 1021 1.0 SMc01428 cold shock transcription regulator protein 1.0 SMc02435 methyltransferase 0.31 13
Rhodopseudomonas palustris CGA009 0.84 TX73_019030 cold-shock protein 0.35 TX73_003140 peptide chain release factor N(5)-glutamine methyltransferase — —
Bosea sp. OAE506 0.84 ABIE41_RS07590 cold-shock protein 0.34 ABIE41_RS23805 peptide chain release factor N(5)-glutamine methyltransferase low > 77
Caulobacter crescentus NA1000 Δfur 0.79 CCNA_02997 cold shock protein CspA 0.33 CCNA_00918 peptide release factor-glutamine N5-methyltransferase — —
Caulobacter crescentus NA1000 0.79 CCNA_02997 cold shock protein CspA 0.33 CCNA_00918 peptide release factor-glutamine N5-methyltransferase — —
Magnetospirillum magneticum AMB-1 0.78 AMB_RS08040 cold-shock protein 0.30 AMB_RS08180 peptide chain release factor N(5)-glutamine methyltransferase — —
Azospirillum brasilense Sp245 0.78 AZOBR_RS03590 cold-shock protein 0.38 AZOBR_RS18930 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.73 A4249_RS00175 cold-shock protein 0.36 A4249_RS11000 peptide chain release factor N(5)-glutamine methyltransferase — —
Phaeobacter inhibens DSM 17395 0.66 PGA1_c26780 cold shock protein CspA 0.29 PGA1_c19880 methyltransferase, HemK family — —
Dinoroseobacter shibae DFL-12 0.66 Dshi_0009 cold-shock DNA-binding domain protein (RefSeq) 0.31 Dshi_1732 modification methylase, HemK family (RefSeq) — —
Pseudomonas simiae WCS417 0.64 PS417_19715 cold-shock protein 0.22 PS417_03610 SAM-dependent methyltransferase — —
Ralstonia solanacearum IBSBF1503 0.60 RALBFv3_RS23260 cold-shock protein 0.21 RALBFv3_RS06595 peptide chain release factor N(5)-glutamine methyltransferase — —
Ralstonia solanacearum UW163 0.60 UW163_RS16510 cold-shock protein 0.21 UW163_RS07030 peptide chain release factor N(5)-glutamine methyltransferase — —
Ralstonia sp. UNC404CL21Col 0.60 ABZR87_RS19675 cold-shock protein 0.25 ABZR87_RS02260 peptide chain release factor N(5)-glutamine methyltransferase — —
Ralstonia solanacearum PSI07 0.60 RPSI07_RS00010 cold-shock protein 0.24 RPSI07_RS10635 peptide chain release factor N(5)-glutamine methyltransferase — —
Cupriavidus basilensis FW507-4G11 0.60 RR42_RS20855 cold-shock protein 0.23 RR42_RS18480 SAM-dependent methyltransferase — —
Ralstonia solanacearum GMI1000 0.60 RS_RS17205 cold-shock protein 0.25 RS_RS14545 peptide chain release factor N(5)-glutamine methyltransferase — —
Lysobacter sp. OAE881 0.59 ABIE51_RS13800 cold-shock protein 0.22 ABIE51_RS05490 peptide chain release factor N(5)-glutamine methyltransferase — —
Herbaspirillum seropedicae SmR1 0.58 HSERO_RS07020 cold-shock protein 0.23 HSERO_RS21375 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase — —
Rhodanobacter denitrificans MT42 0.58 LRK55_RS16740 cold-shock protein 0.21 LRK55_RS12145 peptide chain release factor N(5)-glutamine methyltransferase — —
Rhodanobacter denitrificans FW104-10B01 0.58 LRK54_RS17025 cold-shock protein 0.21 LRK54_RS12410 peptide chain release factor N(5)-glutamine methyltransferase — —
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS02995 cold shock domain-containing protein CspD 0.25 QEN71_RS27675 peptide chain release factor N(5)-glutamine methyltransferase low > 153
Dechlorosoma suillum PS 0.58 Dsui_0007 cold shock protein 0.26 Dsui_0119 protein-(glutamine-N5) methyltransferase, release factor-specific — —
Paraburkholderia bryophila 376MFSha3.1 0.58 H281DRAFT_04084 cold-shock DNA-binding protein family 0.29 H281DRAFT_05691 [protein release factor]-glutamine N5-methyltransferase — —
Burkholderia phytofirmans PsJN 0.58 BPHYT_RS15720 cold-shock protein 0.28 BPHYT_RS17520 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase — —
Paraburkholderia graminis OAS925 0.58 ABIE53_003308 CspA family cold shock protein 0.25 ABIE53_003664 release factor glutamine methyltransferase — —
Shewanella amazonensis SB2B 0.57 Sama_2058 cold-shock DNA-binding domain-containing protein (RefSeq) 0.25 Sama_2565 hemK family protein (RefSeq) — —
Shewanella oneidensis MR-1 0.56 SO2628 cspD stress response protein CspD (NCBI ptt file) 0.25 SO3832 hemK family protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.56 Shewana3_1751 cold-shock DNA-binding protein family protein (RefSeq) 0.24 Shewana3_0770 HemK family modification methylase (RefSeq) — —
Escherichia coli ECRC102 0.55 NIAGMN_05475 cspE transcription antiterminator/RNA stability regulator CspE 0.22 NIAGMN_27780 prmC peptide chain release factor N(5)-glutamine methyltransferase — —
Escherichia coli BL21 0.55 ECD_00593 constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA-binding protein 0.22 ECD_01187 RF-1 and RF-2 N5-glutamine methyltransferase — —
Escherichia fergusonii Becca 0.55 EFB2_03468 Cold shock-like protein CspE 0.22 EFB2_02715 Release factor glutamine methyltransferase — —
Escherichia coli ECRC98 0.55 JDDGAC_11065 cspE transcription antiterminator/RNA stability regulator CspE 0.22 JDDGAC_06120 prmC peptide chain release factor N(5)-glutamine methyltransferase — —
Escherichia coli Nissle 1917 0.55 ECOLIN_RS03400 transcription antiterminator/RNA stability regulator CspE 0.22 ECOLIN_RS07325 peptide chain release factor N(5)-glutamine methyltransferase — —
Escherichia coli ECOR38 0.55 HEPCGN_00855 cspE transcription antiterminator/RNA stability regulator CspE 0.22 HEPCGN_24920 prmC peptide chain release factor N(5)-glutamine methyltransferase low > 85
Escherichia coli ECRC101 0.55 OKFHMN_07420 cspE transcription antiterminator/RNA stability regulator CspE 0.22 OKFHMN_28455 prmC peptide chain release factor N(5)-glutamine methyltransferase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_03082 Cold shock-like protein CspE 0.22 OHPLBJKB_02475 Release factor glutamine methyltransferase low > 73
Escherichia coli ECOR27 0.55 NOLOHH_23795 cspE transcription antiterminator/RNA stability regulator CspE 0.22 NOLOHH_20605 prmC peptide chain release factor N(5)-glutamine methyltransferase — —
Escherichia coli BW25113 0.55 b0623 cspE cold shock protein E (NCBI) 0.22 b1212 prmC N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (NCBI) — —
Escherichia coli ECRC62 0.55 BNILDI_21805 cspE transcription antiterminator/RNA stability regulator CspE 0.22 BNILDI_18760 prmC peptide chain release factor N(5)-glutamine methyltransferase — —
Escherichia coli ECRC101 0.55 MCAODC_26635 cspE transcription antiterminator/RNA stability regulator CspE 0.22 MCAODC_21805 prmC peptide chain release factor N(5)-glutamine methyltransferase — —
Escherichia coli ECRC99 0.55 KEDOAH_20550 cspE transcription antiterminator/RNA stability regulator CspE 0.22 KEDOAH_25450 prmC peptide chain release factor N(5)-glutamine methyltransferase — —
Shewanella loihica PV-4 0.54 Shew_1564 cold-shock DNA-binding domain-containing protein (RefSeq) 0.22 Shew_2911 HemK family modification methylase (RefSeq) — —
Rahnella sp. WP5 0.54 EX31_RS23030 transcription antiterminator/RNA stability regulator CspE 0.22 EX31_RS07310 peptide chain release factor N(5)-glutamine methyltransferase — —
Serratia liquefaciens MT49 0.54 IAI46_05870 transcription antiterminator/RNA stability regulator CspE 0.26 IAI46_10285 peptide chain release factor N(5)-glutamine methyltransferase low > 86
Klebsiella michiganensis M5al 0.54 BWI76_RS07980 cold-shock protein 0.25 BWI76_RS17430 protein-(glutamine-N5) methyltransferase, release factor-specific — —
Pseudomonas fluorescens SBW25-INTG 0.52 PFLU_RS21685 cold-shock protein 0.22 PFLU_RS03660 peptide chain release factor N(5)-glutamine methyltransferase — —
Pseudomonas fluorescens SBW25 0.52 PFLU_RS21685 cold-shock protein 0.22 PFLU_RS03660 peptide chain release factor N(5)-glutamine methyltransferase — —
Alteromonas macleodii MIT1002 0.51 MIT1002_01832 Cold shock-like protein CspD 0.30 MIT1002_01515 Release factor glutamine methyltransferase low > 70
Pseudomonas sp. S08-1 0.50 OH686_17410 Cold shock protein of CSP family 0.25 OH686_07905 protein-(glutamine-N5) methyltransferase, release factor-specific — —
Vibrio cholerae E7946 ATCC 55056 0.50 CSW01_18795 cold-shock protein CspV 0.25 CSW01_10840 protein-(glutamine-N5) methyltransferase, release factor-specific — —
Pseudomonas stutzeri RCH2 0.48 Psest_1239 Cold shock proteins 0.26 Psest_1114 protein-(glutamine-N5) methyltransferase, release factor-specific — —
Kangiella aquimarina DSM 16071 0.48 B158DRAFT_1310 Cold shock proteins 0.27 B158DRAFT_2064 [protein release factor]-glutamine N5-methyltransferase (EC 2.1.1.-) low > 40
Acinetobacter radioresistens SK82 0.46 MPMX26_01659 Cold shock-like protein CspG 0.23 MPMX26_01175 Release factor glutamine methyltransferase low > 36

Not shown: 4 genomes with orthologs for SMc01428 only; 36 genomes with orthologs for SMc02435 only