| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Sinorhizobium meliloti 1021 | 1.0 | SMc03158 | | ABC transporter permease | 1.0 | SMc00647 | | ribosomal large subunit pseudouridine synthase | 0.65 | 9 |
| Rhodopseudomonas palustris CGA009 | 0.69 | TX73_007325 | | ABC transporter permease | 0.49 | TX73_001905 | | RluA family pseudouridine synthase | low | > 86 |
| Agrobacterium fabrum C58 | 0.69 | Atu4488 | | ABC transporter permease | 0.79 | Atu2443 | | ribosomal large subunit pseudouridine synthase, RluD subfamily | — | — |
| Rhizobium sp. OAE497 | 0.69 | ABIE40_RS23110 | | methionine ABC transporter permease | 0.73 | ABIE40_RS14790 | | RluA family pseudouridine synthase | low | > 107 |
| Bosea sp. OAE506 | 0.62 | ABIE41_RS03515 | | methionine ABC transporter permease | 0.49 | ABIE41_RS05635 | | RluA family pseudouridine synthase | low | > 77 |
| Rhodospirillum rubrum S1H | 0.62 | Rru_A2418 | | Binding-protein-dependent transport systems inner membrane component (NCBI) | 0.41 | Rru_A1111 | | Pseudouridine synthase, RluD (NCBI) | low | > 58 |
| Acidovorax sp. GW101-3H11 | 0.55 | Ac3H11_632 | | Methionine ABC transporter permease protein | 0.28 | Ac3H11_1787 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | low | > 79 |
| Azospirillum sp. SherDot2 | 0.55 | MPMX19_05548 | | D-methionine transport system permease protein MetI | 0.46 | MPMX19_05442 | | Ribosomal large subunit pseudouridine synthase D | low | > 112 |
| Herbaspirillum seropedicae SmR1 | 0.53 | HSERO_RS04975 | | methionine ABC transporter permease | 0.31 | HSERO_RS15070 | | ribosomal large subunit pseudouridine synthase D | low | > 78 |
| Ralstonia sp. UNC404CL21Col | 0.53 | ABZR87_RS09535 | | methionine ABC transporter permease | 0.30 | ABZR87_RS13315 | | RluA family pseudouridine synthase | low | > 80 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.53 | GFF5038 | | Methionine ABC transporter permease protein | 0.28 | GFF4870 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Ralstonia solanacearum GMI1000 | 0.52 | RS_RS04580 | | ABC transporter permease | 0.31 | RS_RS08205 | | RluA family pseudouridine synthase | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.51 | RPSI07_RS19625 | | ABC transporter permease | 0.30 | RPSI07_RS15970 | | RluA family pseudouridine synthase | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.51 | RALBFv3_RS13845 | | ABC transporter permease | 0.30 | RALBFv3_RS01520 | | RluA family pseudouridine synthase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.51 | UW163_RS15965 | | ABC transporter permease | 0.30 | UW163_RS14830 | | RluA family pseudouridine synthase | — | — |
| Pseudomonas sp. S08-1 | 0.49 | OH686_23815 | | Methionine ABC transporter permease protein | 0.32 | OH686_16410 | | LSU rRNA pseudouridine(1911/1915/1917) synthase | low | > 80 |
| Acinetobacter radioresistens SK82 | 0.49 | MPMX26_01860 | | Methionine import system permease protein MetP | 0.27 | MPMX26_00735 | | Ribosomal large subunit pseudouridine synthase D | low | > 36 |
| Vibrio cholerae E7946 ATCC 55056 | 0.48 | CSW01_04640 | | methionine ABC transporter permease | 0.31 | CSW01_03695 | | ribosomal large subunit pseudouridine synthase D | low | > 62 |
| Pseudomonas sp. RS175 | 0.47 | PFR28_04846 | | D-methionine transport system permease protein MetI | 0.32 | PFR28_03748 | | Ribosomal large subunit pseudouridine synthase D | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.47 | PFLU_RS01170 | | ABC transporter permease | 0.32 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 109 |
| Fusobacterium nucleatum SB010 | 0.47 | HUW76_06265 | | ABC transporter permease | 0.31 | HUW76_08575 | | RluA family pseudouridine synthase | low | > 35 |
| Pseudomonas fluorescens SBW25-INTG | 0.47 | PFLU_RS01170 | | ABC transporter permease | 0.32 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.46 | AO356_10280 | | ABC transporter permease | 0.32 | AO356_15925 | | ribosomal large subunit pseudouridine synthase D | low | > 104 |
| Pseudomonas fluorescens FW300-N2E3 | 0.46 | AO353_11630 | | ABC transporter permease | 0.32 | AO353_14220 | | ribosomal large subunit pseudouridine synthase D | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.46 | Pf6N2E2_3928 | | Methionine ABC transporter permease protein | 0.32 | Pf6N2E2_5127 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.46 | PfGW456L13_454 | | Methionine ABC transporter permease protein | 0.33 | PfGW456L13_1493 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Klebsiella michiganensis M5al | 0.44 | BWI76_RS15035 | | metal ABC transporter permease | 0.29 | BWI76_RS21450 | | 23S rRNA pseudouridine(1911/1915/1917) synthase | low | > 92 |
| Rahnella sp. WP5 | 0.44 | EX31_RS15585 | | ABC transporter permease | 0.30 | EX31_RS07570 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 89 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.44 | Psyr_0349 | | Binding-protein-dependent transport systems inner membrane component | 0.32 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.44 | Psyr_0349 | | Binding-protein-dependent transport systems inner membrane component | 0.32 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Pseudomonas putida KT2440 | 0.43 | PP_0219 | | L,D-methionine D-methionine ABC transporter - permease subunit | 0.33 | PP_0623 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | — | — |
| Pseudomonas simiae WCS417 | 0.43 | PS417_01060 | | ABC transporter permease | 0.32 | PS417_03820 | | ribosomal large subunit pseudouridine synthase D | — | — |
| Enterobacter asburiae PDN3 | 0.43 | EX28DRAFT_1675 | | ABC-type metal ion transport system, permease component | 0.29 | EX28DRAFT_2695 | | pseudouridine synthase, RluA family | low | > 76 |
| Enterobacter sp. TBS_079 | 0.43 | MPMX20_01956 | | Methionine import system permease protein MetP | 0.29 | MPMX20_03463 | | Ribosomal large subunit pseudouridine synthase D | low | > 85 |
| Marinobacter adhaerens HP15 | 0.42 | HP15_3904 | | binding-protein-dependent transport systems inner membrane component | 0.33 | HP15_527 | | pseudouridine synthase, RluA family | low | > 73 |
| Rhodanobacter sp. FW510-T8 | 0.42 | OKGIIK_03555 | metP | metal ABC transporter permease | 0.34 | OKGIIK_01790 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 52 |
| Pseudomonas fluorescens FW300-N1B4 | 0.42 | Pf1N1B4_1703 | | Methionine ABC transporter permease protein | 0.32 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pantoea sp. MT58 | 0.41 | IAI47_20550 | | ABC transporter permease | 0.30 | IAI47_04425 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 76 |
| Serratia liquefaciens MT49 | 0.41 | IAI46_07080 | | ABC transporter permease | 0.29 | IAI46_03985 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.40 | HER17_RS04375 | | methionine ABC transporter permease MetI | 0.29 | HER17_RS05400 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Dickeya dadantii 3937 | 0.40 | DDA3937_RS07980 | | ABC transporter permease subunit | 0.31 | DDA3937_RS16110 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 74 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.39 | Xcc-8004.4602.1 | | Methionine ABC transporter permease protein | 0.32 | Xcc-8004.1362.1 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | low | > 74 |
| Escherichia coli ECRC99 | 0.39 | KEDOAH_18100 | metI | D-methionine transport system permease protein MetI | 0.30 | KEDOAH_06970 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia coli ECRC101 | 0.39 | MCAODC_00570 | metI | D-methionine transport system permease protein MetI | 0.30 | MCAODC_11780 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.65 | 11 |
| Escherichia coli ECRC62 | 0.39 | BNILDI_09270 | metI | D-methionine transport system permease protein MetI | 0.30 | BNILDI_11730 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Escherichia fergusonii Becca | 0.39 | EFB2_03845 | | D-methionine transport system permease protein MetI | 0.30 | EFB2_01296 | | Ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Escherichia coli ECRC102 | 0.39 | NIAGMN_07905 | metI | D-methionine transport system permease protein MetI | 0.30 | NIAGMN_19020 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia coli BL21 | 0.39 | ECD_00197 | | DL-methionine transporter subunit | 0.30 | ECD_02484 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | low | > 61 |
| Escherichia coli ECRC98 | 0.39 | JDDGAC_13650 | metI | D-methionine transport system permease protein MetI | 0.30 | JDDGAC_24915 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.72 | 24 |
| Escherichia coli ECRC100 | 0.39 | OKFHMN_10055 | metI | D-methionine transport system permease protein MetI | 0.30 | OKFHMN_21250 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 80 |
| Escherichia coli ECOR27 | 0.39 | NOLOHH_02400 | metI | D-methionine transport system permease protein MetI | 0.30 | NOLOHH_12925 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Escherichia coli Nissle 1917 | 0.39 | ECOLIN_RS01090 | | methionine ABC transporter permease MetI | 0.30 | ECOLIN_RS14675 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 55 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.39 | OHPLBJKB_03463 | | D-methionine transport system permease protein MetI | 0.30 | OHPLBJKB_01112 | | Ribosomal large subunit pseudouridine synthase D | low | > 73 |
| Escherichia coli ECOR38 | 0.39 | HEPCGN_07995 | metI | D-methionine transport system permease protein MetI | 0.30 | HEPCGN_20375 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 87 |
| Escherichia coli BW25113 | 0.39 | b0198 | metI | DL-methionine transporter subunit (NCBI) | 0.30 | b2594 | rluD | 23S rRNA pseudouridine synthase (NCBI) | — | — |
| Dickeya dianthicola 67-19 | 0.39 | HGI48_RS16920 | | methionine ABC transporter permease MetI | 0.31 | HGI48_RS16235 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.73 | 13 |
| Dickeya dianthicola ME23 | 0.39 | DZA65_RS17995 | | methionine ABC transporter permease MetI | 0.31 | DZA65_RS17330 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.38 | GFF22 | | Methionine ABC transporter permease protein | 0.29 | GFF4182 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.61 | 22 |
| Variovorax sp. SCN45 | 0.38 | GFF3113 | | Methionine ABC transporter permease protein | 0.27 | GFF988 | | LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) | low | > 127 |
| Variovorax sp. OAS795 | 0.38 | ABID97_RS21740 | | methionine ABC transporter permease | 0.26 | ABID97_RS14190 | | RluA family pseudouridine synthase | low | > 91 |
| Rhodanobacter denitrificans MT42 | 0.37 | LRK55_RS14445 | | methionine ABC transporter permease | 0.34 | LRK55_RS04745 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.37 | LRK54_RS14730 | | ABC transporter permease | 0.34 | LRK54_RS04965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 59 |
| Dyella japonica UNC79MFTsu3.2 | 0.37 | ABZR86_RS00470 | | methionine ABC transporter permease | 0.34 | ABZR86_RS10965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 74 |
| Castellaniella sp019104865 MT123 | 0.37 | ABCV34_RS09540 | | methionine ABC transporter permease | 0.25 | ABCV34_RS01885 | | RluA family pseudouridine synthase | low | > 48 |
| Caulobacter crescentus NA1000 Δfur | 0.33 | CCNA_02750 | | ABC transporter permease protein | 0.39 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | low | > 67 |
| Caulobacter crescentus NA1000 | 0.33 | CCNA_02750 | | ABC transporter permease protein | 0.39 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | low | > 66 |
| Erwinia tracheiphila SCR3 | 0.33 | LU632_RS19825 | | methionine ABC transporter permease MetI | 0.31 | LU632_RS16945 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 74 |
| Bifidobacterium breve UCC2003 | 0.28 | BBR_RS14455 | | ABC transporter permease | 0.19 | BBR_RS17135 | | RluA family pseudouridine synthase | low | > 34 |
Not shown: 8 genomes with orthologs for SMc03158 only; 25 genomes with orthologs for SMc00647 only