Conservation of cofitness between RR42_RS00940 and RR42_RS30655 in Cupriavidus basilensis FW507-4G11

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS00940 biotin synthase 1.0 RR42_RS30655 LysR family transcriptional regulator 0.53 14
Paraburkholderia sabiae LMG 24235 0.74 QEN71_RS01085 biotin synthase BioB 0.28 QEN71_RS19730 LysR family transcriptional regulator — —
Burkholderia phytofirmans PsJN 0.73 BPHYT_RS02150 biotin synthase 0.82 BPHYT_RS26650 LysR family transcriptional regulator — —
Ralstonia solanacearum PSI07 0.71 RPSI07_RS22850 biotin synthase BioB 0.64 RPSI07_RS02550 LysR family transcriptional regulator 0.68 9
Ralstonia solanacearum GMI1000 0.71 RS_RS01305 biotin synthase 0.62 RS_RS20365 LysR family transcriptional regulator low > 80
Ralstonia solanacearum IBSBF1503 0.71 RALBFv3_RS10465 biotin synthase BioB 0.63 RALBFv3_RS20315 LysR family transcriptional regulator low > 76
Ralstonia solanacearum UW163 0.71 UW163_RS03115 biotin synthase BioB 0.63 UW163_RS18860 LysR family transcriptional regulator — —
Ralstonia sp. UNC404CL21Col 0.70 ABZR87_RS06265 biotin synthase BioB 0.65 ABZR87_RS20875 LysR family transcriptional regulator 0.58 69
Marinobacter adhaerens HP15 0.62 HP15_2486 biotin synthase 0.29 HP15_458 transcriptional regulator, LysR family protein 0.95 3
Castellaniella sp019104865 MT123 0.61 ABCV34_RS15280 biotin synthase BioB 0.36 ABCV34_RS04450 LysR substrate-binding domain-containing protein low > 48
Pseudomonas stutzeri RCH2 0.61 Psest_0411 biotin synthetase 0.48 Psest_1450 Transcriptional regulator — —
Pseudomonas putida KT2440 0.61 PP_0362 Biotin synthase 0.46 PP_1063 DNA-binding transcriptional regulator, homocysteine-binding 0.32 92
Acidovorax sp. GW101-3H11 0.60 Ac3H11_2272 Biotin synthase (EC 2.8.1.6) 0.53 Ac3H11_2344 Transcriptional activator MetR 0.58 22
Xanthomonas campestris pv. campestris strain 8004 0.60 Xcc-8004.505.1 Biotin synthase (EC 2.8.1.6) 0.28 Xcc-8004.400.1 Transcriptional activator MetR low > 74
Herbaspirillum seropedicae SmR1 0.60 HSERO_RS12235 biotin synthase 0.30 HSERO_RS22770 LysR family transcriptional regulator low > 78
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_4687 biotin synthase 0.47 Psyr_3917 transcriptional regulator, LysR family low > 86
Pseudomonas sp. S08-1 0.60 OH686_10355 biotin synthase 0.46 OH686_20465 Transcriptional activator MetR low > 80
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_4687 biotin synthase 0.47 Psyr_3917 transcriptional regulator, LysR family low > 86
Alteromonas macleodii MIT1002 0.60 MIT1002_01379 Biotin synthase 0.28 MIT1002_01119 HTH-type transcriptional regulator GltC 0.75 41
Pseudomonas fluorescens FW300-N2E2 0.60 Pf6N2E2_4759 Biotin synthase (EC 2.8.1.6) 0.47 Pf6N2E2_5471 Transcriptional activator MetR low > 103
Pseudomonas sp. RS175 0.60 PFR28_04103 Biotin synthase 0.47 PFR28_03478 HTH-type transcriptional regulator MetR low > 88
Pseudomonas fluorescens FW300-N2C3 0.60 AO356_14135 biotin synthase 0.47 AO356_17735 XRE family transcriptional regulator low > 104
Pseudomonas simiae WCS417 0.59 PS417_26005 biotin synthase 0.47 PS417_05455 XRE family transcriptional regulator 0.36 27
Shewanella amazonensis SB2B 0.59 Sama_1438 biotin synthase (RefSeq) 0.32 Sama_2628 transcriptional activator protein MetR (RefSeq) — —
Pseudomonas fluorescens FW300-N1B4 0.59 Pf1N1B4_2487 Biotin synthase (EC 2.8.1.6) 0.47 Pf1N1B4_784 Transcriptional activator MetR low > 87
Erwinia tracheiphila SCR3 0.59 LU632_RS09130 bioB biotin synthase BioB 0.34 LU632_RS24035 metR HTH-type transcriptional regulator MetR — —
Pseudomonas fluorescens GW456-L13 0.59 PfGW456L13_1147 Biotin synthase (EC 2.8.1.6) 0.47 PfGW456L13_4778 Transcriptional activator MetR low > 87
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_07525 biotin synthase 0.48 AO353_16210 XRE family transcriptional regulator 0.47 101
Shewanella sp. ANA-3 0.59 Shewana3_2519 biotin synthase (RefSeq) 0.34 Shewana3_3470 LysR family transcriptional regulator (RefSeq) low > 73
Shewanella oneidensis MR-1 0.59 SO2740 bioB biotin synthase (NCBI ptt file) 0.34 SO0817 metR transcriptional activator protein MetR (NCBI ptt file) — —
Vibrio cholerae E7946 ATCC 55056 0.59 CSW01_05645 biotin synthase 0.40 CSW01_08580 HTH-type transcriptional regulator MetR low > 62
Pseudomonas fluorescens SBW25 0.59 PFLU_RS27650 biotin synthase BioB 0.48 PFLU_RS05540 LysR family transcriptional regulator low > 109
Pantoea sp. MT58 0.59 IAI47_13530 biotin synthase BioB 0.35 IAI47_18315 HTH-type transcriptional regulator MetR low > 76
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS27650 biotin synthase BioB 0.48 PFLU_RS05540 LysR family transcriptional regulator low > 109
Variovorax sp. OAS795 0.59 ABID97_RS13955 biotin synthase BioB 0.50 ABID97_RS19400 LysR family transcriptional regulator — —
Variovorax sp. SCN45 0.58 GFF937 Biotin synthase (EC 2.8.1.6) 0.30 GFF796 Transcriptional activator MetR low > 127
Escherichia fergusonii Becca 0.58 EFB2_03330 Biotin synthase 0.36 EFB2_04809 HTH-type transcriptional regulator MetR low > 86
Escherichia coli Nissle 1917 0.58 ECOLIN_RS04130 biotin synthase BioB 0.36 ECOLIN_RS30005 HTH-type transcriptional regulator MetR — —
Escherichia coli ECOR27 0.58 NOLOHH_22770 bioB biotin synthase BioB 0.36 NOLOHH_06460 metR HTH-type transcriptional regulator MetR low > 75
Escherichia coli BL21 0.58 ECD_00742 biotin synthase 0.36 ECD_03707 methionine biosynthesis regulon transcriptional regulator low > 61
Escherichia coli ECRC102 0.58 NIAGMN_04445 bioB biotin synthase BioB 0.36 NIAGMN_12085 metR HTH-type transcriptional regulator MetR — —
Escherichia coli ECRC101 0.58 MCAODC_25615 bioB biotin synthase BioB 0.36 MCAODC_04835 metR HTH-type transcriptional regulator MetR low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.58 OHPLBJKB_02938 Biotin synthase 0.36 OHPLBJKB_04223 HTH-type transcriptional regulator MetR low > 73
Escherichia coli ECOR38 0.58 HEPCGN_01640 bioB biotin synthase BioB 0.36 HEPCGN_13030 metR HTH-type transcriptional regulator MetR low > 87
Escherichia coli ECRC62 0.58 BNILDI_21040 bioB biotin synthase BioB 0.36 BNILDI_05070 metR HTH-type transcriptional regulator MetR low > 75
Escherichia coli ECRC99 0.58 KEDOAH_21510 bioB biotin synthase BioB 0.36 KEDOAH_13820 metR HTH-type transcriptional regulator MetR — —
Escherichia coli BW25113 0.58 b0775 bioB biotin synthase (NCBI) 0.36 b3828 metR DNA-binding transcriptional activator, homocysteine-binding (NCBI) 0.34 31
Escherichia coli ECRC98 0.58 JDDGAC_10035 bioB biotin synthase BioB 0.36 JDDGAC_17955 metR HTH-type transcriptional regulator MetR low > 86
Escherichia coli ECRC100 0.58 OKFHMN_06400 bioB biotin synthase BioB 0.36 OKFHMN_14330 metR HTH-type transcriptional regulator MetR low > 80
Klebsiella michiganensis M5al 0.58 BWI76_RS08760 biotin synthase 0.35 BWI76_RS01275 LysR family transcriptional regulator 0.39 12
Enterobacter sp. TBS_079 0.58 MPMX20_01403 Biotin synthase 0.38 MPMX20_04452 HTH-type transcriptional regulator MetR low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF671 Biotin synthase (EC 2.8.1.6) 0.36 GFF253 Transcriptional activator MetR low > 78
Enterobacter asburiae PDN3 0.58 EX28DRAFT_2216 biotin synthase (EC 2.8.1.6) 0.37 EX28DRAFT_4493 Transcriptional regulator low > 76
Rahnella sp. WP5 0.58 EX31_RS23695 biotin synthase BioB 0.36 EX31_RS25370 HTH-type transcriptional regulator MetR 0.56 25
Serratia liquefaciens MT49 0.58 IAI46_06525 biotin synthase BioB 0.35 IAI46_01030 HTH-type transcriptional regulator MetR low > 86
Pectobacterium carotovorum WPP14 0.58 HER17_RS13460 biotin synthase BioB 0.36 HER17_RS20690 HTH-type transcriptional regulator MetR low > 75
Dickeya dadantii 3937 0.58 DDA3937_RS08510 biotin synthase BioB 0.34 DDA3937_RS20385 HTH-type transcriptional regulator MetR 0.69 22
Dickeya dianthicola ME23 0.57 DZA65_RS08965 biotin synthase BioB 0.35 DZA65_RS00870 HTH-type transcriptional regulator MetR 0.64 19
Dickeya dianthicola 67-19 0.57 HGI48_RS08675 biotin synthase BioB 0.34 HGI48_RS00815 HTH-type transcriptional regulator MetR 0.86 12
Shewanella loihica PV-4 0.57 Shew_1719 biotin synthase (RefSeq) 0.32 Shew_2987 LysR family transcriptional regulator (RefSeq) — —
Acinetobacter radioresistens SK82 0.56 MPMX26_01785 Biotin synthase 0.34 MPMX26_01201 HTH-type transcriptional regulator MetR low > 36
Agrobacterium fabrum C58 0.56 Atu3997 biotin synthetase 0.30 Atu3827 LysR family transcriptional regulator low > 89
Phaeobacter inhibens DSM 17395 0.53 PGA1_c09120 biotin synthase BioB 0.34 PGA1_c11710 transcriptional regulator, LysR family 0.39 53
Mucilaginibacter yixingensis YX-36 DSM 26809 0.47 ABZR88_RS10190 biotin synthase BioB 0.23 ABZR88_RS03450 LysR family transcriptional regulator low > 71

Not shown: 28 genomes with orthologs for RR42_RS00940 only; 3 genomes with orthologs for RR42_RS30655 only