Conservation of cofitness between RR42_RS01405 and RR42_RS04540 in Cupriavidus basilensis FW507-4G11

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS01405 lytic transglycosylase 1.0 RR42_RS04540 lytic transglycosylase 0.55 4
Ralstonia sp. UNC404CL21Col 0.70 ABZR87_RS04885 lytic transglycosylase domain-containing protein 0.68 ABZR87_RS09520 lytic murein transglycosylase B 0.39 69
Ralstonia solanacearum UW163 0.70 UW163_RS03720 lytic transglycosylase 0.67 UW163_RS15980 lytic murein transglycosylase B — —
Ralstonia solanacearum GMI1000 0.70 RS_RS00445 lytic transglycosylase 0.65 RS_RS04565 lytic murein transglycosylase B low > 80
Ralstonia solanacearum IBSBF1503 0.70 RALBFv3_RS09860 lytic transglycosylase 0.67 RALBFv3_RS13830 lytic murein transglycosylase B low > 76
Ralstonia solanacearum PSI07 0.69 RPSI07_RS23510 lytic transglycosylase 0.65 RPSI07_RS19640 lytic murein transglycosylase B 0.42 18
Paraburkholderia sabiae LMG 24235 0.52 QEN71_RS28635 lytic transglycosylase domain-containing protein 0.55 QEN71_RS04140 lytic murein transglycosylase B 0.57 11
Burkholderia phytofirmans PsJN 0.51 BPHYT_RS18610 lytic transglycosylase 0.55 BPHYT_RS14840 lytic transglycosylase 0.75 1
Paraburkholderia graminis OAS925 0.50 ABIE53_000044 soluble lytic murein transglycosylase 0.54 ABIE53_003143 membrane-bound lytic murein transglycosylase B 0.67 9
Paraburkholderia bryophila 376MFSha3.1 0.49 H281DRAFT_05816 soluble lytic murein transglycosylase 0.56 H281DRAFT_03910 membrane-bound lytic murein transglycosylase B 0.44 44
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS21415 lytic transglycosylase 0.40 HSERO_RS04945 murein transglycosylase low > 78
Dechlorosoma suillum PS 0.35 Dsui_0683 soluble lytic murein transglycosylase-like protein 0.31 Dsui_1972 lytic murein transglycosylase B low > 51
Variovorax sp. SCN45 0.33 GFF5163 Soluble lytic murein transglycosylase (EC 4.2.2.n1) 0.34 GFF2666 Membrane-bound lytic murein transglycosylase B low > 127
Variovorax sp. OAS795 0.33 ABID97_RS06595 transglycosylase SLT domain-containing protein 0.34 ABID97_RS19915 lytic murein transglycosylase B low > 91
Acidovorax sp. GW101-3H11 0.32 Ac3H11_1834 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.37 Ac3H11_3197 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF1614 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.33 GFF5533 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) low > 90
Castellaniella sp019104865 MT123 0.28 ABCV34_RS13560 transglycosylase SLT domain-containing protein 0.29 ABCV34_RS07050 lytic murein transglycosylase B low > 48
Acinetobacter radioresistens SK82 0.16 MPMX26_02666 Soluble lytic murein transglycosylase 0.24 MPMX26_02108 Membrane-bound lytic murein transglycosylase B low > 36
Pseudomonas fluorescens GW456-L13 0.16 PfGW456L13_4045 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.34 PfGW456L13_1362 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) 0.43 51
Pseudomonas fluorescens FW300-N2E3 0.16 AO353_00530 lytic transglycosylase 0.34 AO353_06465 lytic transglycosylase low > 101
Pseudomonas simiae WCS417 0.16 PS417_07550 lytic transglycosylase 0.34 PS417_24715 lytic transglycosylase low > 88
Pseudomonas fluorescens SBW25-INTG 0.16 PFLU_RS07630 transglycosylase SLT domain-containing protein 0.34 PFLU_RS26645 lytic murein transglycosylase B low > 109
Pseudomonas sp. RS175 0.16 PFR28_01106 Soluble lytic murein transglycosylase 0.35 PFR28_03866 Membrane-bound lytic murein transglycosylase B low > 88
Pseudomonas fluorescens SBW25 0.16 PFLU_RS07630 transglycosylase SLT domain-containing protein 0.34 PFLU_RS26645 lytic murein transglycosylase B low > 109
Pseudomonas fluorescens FW300-N2E2 0.16 Pf6N2E2_2294 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.34 Pf6N2E2_4999 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) 0.32 6
Pseudomonas sp. S08-1 0.16 OH686_21900 Soluble lytic murein transglycosylase 0.33 OH686_09310 lytic murein transglycosylase B low > 80
Pseudomonas fluorescens FW300-N2C3 0.16 AO356_02350 lytic transglycosylase 0.35 AO356_15320 lytic transglycosylase 0.29 11
Pseudomonas fluorescens FW300-N1B4 0.15 Pf1N1B4_3898 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.34 Pf1N1B4_2694 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) 0.33 29
Pseudomonas syringae pv. syringae B728a ΔmexB 0.15 Psyr_3295 SLT 0.33 Psyr_4363 membrane-bound lytic murein transglycosylase B 0.37 75
Pseudomonas syringae pv. syringae B728a 0.15 Psyr_3295 SLT 0.33 Psyr_4363 membrane-bound lytic murein transglycosylase B low > 86
Pseudomonas putida KT2440 0.15 PP_2130 putative Soluble lytic transglycosylase 0.33 PP_4805 membrane-bound lytic murein transglycosylase B low > 96
Dyella japonica UNC79MFTsu3.2 0.15 ABZR86_RS12745 transglycosylase SLT domain-containing protein 0.25 ABZR86_RS17480 lytic murein transglycosylase B low > 74
Pseudomonas stutzeri RCH2 0.15 Psest_1844 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 0.33 Psest_0514 lytic murein transglycosylase B low > 67
Rhodanobacter denitrificans FW104-10B01 0.14 LRK54_RS07245 transglycosylase SLT domain-containing protein 0.24 LRK54_RS06500 lytic murein transglycosylase B 0.51 17
Rhodanobacter denitrificans MT42 0.14 LRK55_RS06980 transglycosylase SLT domain-containing protein 0.24 LRK55_RS06245 lytic murein transglycosylase B low > 63
Shewanella sp. ANA-3 0.13 Shewana3_2236 lytic transglycosylase, catalytic (RefSeq) 0.26 Shewana3_0993 lytic murein transglycosylase B (RefSeq) low > 73
Pantoea sp. MT58 0.13 IAI47_16260 murein transglycosylase 0.30 IAI47_04275 lytic murein transglycosylase B 0.37 2
Shewanella oneidensis MR-1 0.13 SO2040 soluble lytic murein transglycosylase, putative (NCBI ptt file) 0.26 SO1166 membrane-bound lytic transglycosylase, putative (NCBI ptt file) low > 76
Dickeya dadantii 3937 0.12 DDA3937_RS18455 murein transglycosylase 0.28 DDA3937_RS03745 lytic murein transglycosylase B low > 74
Dickeya dianthicola 67-19 0.12 HGI48_RS18385 murein transglycosylase 0.28 HGI48_RS03780 lytic murein transglycosylase B low > 71
Rahnella sp. WP5 0.12 EX31_RS03985 murein transglycosylase 0.31 EX31_RS07810 lytic murein transglycosylase B low > 89
Enterobacter asburiae PDN3 0.12 EX28DRAFT_3602 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 0.30 EX28DRAFT_2790 lytic murein transglycosylase B low > 76
Dickeya dianthicola ME23 0.12 DZA65_RS19525 murein transglycosylase 0.28 DZA65_RS03910 lytic murein transglycosylase B 0.58 8
Klebsiella michiganensis M5al 0.12 BWI76_RS04185 murein transglycosylase 0.30 BWI76_RS22210 murein transglycosylase B 0.32 8
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.12 GFF1060 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.31 GFF4695 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) low > 78
Escherichia fergusonii Becca 0.12 EFB2_04052 Soluble lytic murein transglycosylase 0.31 EFB2_01223 Membrane-bound lytic murein transglycosylase B low > 86
Escherichia coli Nissle 1917 0.12 ECOLIN_RS25210 murein transglycosylase 0.32 ECOLIN_RS27170 lytic murein transglycosylase B — —
Escherichia coli BW25113 0.12 b4392 slt soluble lytic murein transglycosylase (VIMSS) 0.31 b2701 mltB membrane-bound lytic murein transglycosylase B (NCBI) 0.40 7
Escherichia coli BL21 0.11 ECD_04268 lytic murein transglycosylase, soluble 0.31 ECD_02551 membrane-bound lytic murein transglycosylase B 0.45 43
Pectobacterium carotovorum WPP14 0.11 HER17_RS02750 murein transglycosylase 0.30 HER17_RS16185 lytic murein transglycosylase B low > 75
Serratia liquefaciens MT49 0.11 IAI46_02985 murein transglycosylase 0.31 IAI46_18155 lytic murein transglycosylase B low > 86
Erwinia tracheiphila SCR3 0.11 LU632_RS02575 sltY murein transglycosylase 0.30 LU632_RS15745 mltB lytic murein transglycosylase B low > 74
Shewanella amazonensis SB2B 0.10 Sama_1895 soluble lytic murein transglycosylase, putative (RefSeq) 0.26 Sama_2590 lytic murein transglycosylase B (RefSeq) low > 62

Not shown: 15 genomes with orthologs for RR42_RS01405 only; 6 genomes with orthologs for RR42_RS04540 only