Conservation of cofitness between RR42_RS34650 and RR42_RS04475 in Cupriavidus basilensis FW507-4G11

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS34650 LacI family transcriptional regulator 1.0 RR42_RS04475 3-phosphoshikimate 1-carboxyvinyltransferase 0.45 9
Echinicola vietnamensis KMM 6221, DSM 17526 0.25 Echvi_3073 Transcriptional regulators 0.25 Echvi_0122 5-enolpyruvylshikimate-3-phosphate synthase — —
Dyella japonica UNC79MFTsu3.2 0.24 ABZR86_RS01690 LacI family DNA-binding transcriptional regulator 0.18 ABZR86_RS02230 3-phosphoshikimate 1-carboxyvinyltransferase low > 74
Enterobacter sp. TBS_079 0.24 MPMX20_00737 Maltose regulon regulatory protein MalI 0.51 MPMX20_01567 3-phosphoshikimate 1-carboxyvinyltransferase low > 85
Sinorhizobium meliloti 1021 0.24 SM_b20014 transcriptional regulator 0.16 SMc00333 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bosea sp. OAE506 0.24 ABIE41_RS06440 LacI family DNA-binding transcriptional regulator 0.14 ABIE41_RS03910 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pectobacterium carotovorum WPP14 0.23 HER17_RS21525 ribose operon transcriptional repressor RbsR 0.50 HER17_RS12285 3-phosphoshikimate 1-carboxyvinyltransferase low > 75
Vibrio cholerae E7946 ATCC 55056 0.23 CSW01_14670 transcriptional repressor PurR 0.52 CSW01_08705 3-phosphoshikimate 1-carboxyvinyltransferase low > 62
Serratia liquefaciens MT49 0.23 IAI46_25050 ribose operon transcriptional repressor RbsR 0.51 IAI46_08640 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Klebsiella michiganensis M5al 0.23 BWI76_RS00765 DNA-binding transcriptional regulator CytR 0.50 BWI76_RS09760 3-phosphoshikimate 1-carboxyvinyltransferase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.23 GFF2316 Transcriptional (co)regulator CytR 0.50 GFF3665 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) low > 78
Escherichia coli Nissle 1917 0.23 ECOLIN_RS22650 DNA-binding transcriptional regulator CytR 0.50 ECOLIN_RS04810 3-phosphoshikimate 1-carboxyvinyltransferase low > 55
Escherichia coli ECOR38 0.23 HEPCGN_12370 cytR DNA-binding transcriptional regulator CytR 0.50 HEPCGN_23035 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 87
Escherichia coli ECRC100 0.23 OKFHMN_13725 cytR DNA-binding transcriptional regulator CytR 0.50 OKFHMN_05485 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 80
Escherichia coli ECRC102 0.23 NIAGMN_11480 cytR DNA-binding transcriptional regulator CytR 0.50 NIAGMN_03205 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dickeya dadantii 3937 0.23 DDA3937_RS00055 ribose operon transcriptional repressor RbsR 0.50 DDA3937_RS09675 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC101 0.23 MCAODC_04225 cytR DNA-binding transcriptional regulator CytR 0.50 MCAODC_24875 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 87
Escherichia coli ECRC98 0.23 JDDGAC_17350 cytR DNA-binding transcriptional regulator CytR 0.50 JDDGAC_09095 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Escherichia coli BW25113 0.23 b3934 cytR DNA-binding transcriptional dual regulator (NCBI) 0.50 b0908 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) low > 76
Escherichia coli ECOR27 0.23 NOLOHH_05870 cytR DNA-binding transcriptional regulator CytR 0.50 NOLOHH_22045 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 75
Escherichia coli ECRC99 0.23 KEDOAH_14435 cytR DNA-binding transcriptional regulator CytR 0.50 KEDOAH_22250 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli BL21 0.23 ECD_03819 Anti-activator for CytR-CRP nucleoside utilization regulon 0.50 ECD_00912 5-enolpyruvylshikimate-3-phosphate synthetase low > 61
Ralstonia sp. UNC404CL21Col 0.23 ABZR87_RS09955 LacI family DNA-binding transcriptional regulator 0.76 ABZR87_RS09465 3-phosphoshikimate 1-carboxyvinyltransferase low > 80
Escherichia coli ECRC62 0.23 BNILDI_05660 cytR DNA-binding transcriptional regulator CytR 0.50 BNILDI_20300 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.23 OHPLBJKB_04117 HTH-type transcriptional repressor CytR 0.50 OHPLBJKB_02760 3-phosphoshikimate 1-carboxyvinyltransferase low > 73
Escherichia fergusonii Becca 0.23 EFB2_04684 HTH-type transcriptional repressor CytR 0.50 EFB2_03156 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Ralstonia solanacearum PSI07 0.23 RPSI07_RS19225 LacI family transcriptional regulator 0.76 RPSI07_RS19695 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum GMI1000 0.23 RS_RS05020 LacI family transcriptional regulator 0.77 RS_RS04510 3-phosphoshikimate 1-carboxyvinyltransferase low > 80
Paraburkholderia bryophila 376MFSha3.1 0.22 H281DRAFT_03227 transcriptional regulator, LacI family 0.69 H281DRAFT_03922 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum UW163 0.22 UW163_RS11705 LacI family transcriptional regulator 0.76 UW163_RS16035 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhizobium sp. OAE497 0.22 ABIE40_RS16645 LacI family DNA-binding transcriptional regulator 0.24 ABIE40_RS05420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum IBSBF1503 0.22 RALBFv3_RS14240 LacI family transcriptional regulator 0.76 RALBFv3_RS13775 3-phosphoshikimate 1-carboxyvinyltransferase low > 76
Dickeya dianthicola 67-19 0.22 HGI48_RS21310 ribose operon transcriptional repressor RbsR 0.50 HGI48_RS09685 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dinoroseobacter shibae DFL-12 0.22 Dshi_2238 transcriptional regulator, LacI family (RefSeq) 0.15 Dshi_1022 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Rhodanobacter denitrificans MT42 0.22 LRK55_RS08435 LacI family DNA-binding transcriptional regulator 0.17 LRK55_RS00130 3-phosphoshikimate 1-carboxyvinyltransferase low > 63
Rhodanobacter denitrificans FW104-10B01 0.22 LRK54_RS08670 LacI family transcriptional regulator 0.16 LRK54_RS00390 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pantoea sp. MT58 0.22 IAI47_00375 ribose operon transcriptional repressor RbsR 0.51 IAI47_12860 3-phosphoshikimate 1-carboxyvinyltransferase — —
Herbaspirillum seropedicae SmR1 0.22 HSERO_RS11495 LacI family transcription regulator 0.62 HSERO_RS18420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Lysobacter sp. OAE881 0.22 ABIE51_RS08800 LacI family DNA-binding transcriptional regulator 0.18 ABIE51_RS12135 3-phosphoshikimate 1-carboxyvinyltransferase — —
Paraburkholderia graminis OAS925 0.22 ABIE53_004064 DNA-binding LacI/PurR family transcriptional regulator 0.67 ABIE53_003154 3-phosphoshikimate 1-carboxyvinyltransferase — —
Sphingomonas koreensis DSMZ 15582 0.21 Ga0059261_2309 transcriptional regulator, LacI family 0.15 Ga0059261_0167 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) — —
Paraburkholderia sabiae LMG 24235 0.21 QEN71_RS38555 substrate-binding domain-containing protein 0.70 QEN71_RS04085 3-phosphoshikimate 1-carboxyvinyltransferase 0.44 108
Mucilaginibacter yixingensis YX-36 DSM 26809 0.21 ABZR88_RS16160 LacI family DNA-binding transcriptional regulator 0.22 ABZR88_RS07000 3-phosphoshikimate 1-carboxyvinyltransferase — —
Xanthomonas campestris pv. campestris strain 8004 0.21 Xcc-8004.5254.1 Transcriptional regulator, LacI family 0.14 Xcc-8004.3281.1 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) low > 74
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS15195 LacI family transcriptional regulator 0.22 PFLU_RS13540 3-phosphoshikimate 1-carboxyvinyltransferase low > 109
Pseudomonas fluorescens SBW25 0.21 PFLU_RS15195 LacI family transcriptional regulator 0.22 PFLU_RS13540 3-phosphoshikimate 1-carboxyvinyltransferase low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.21 Psyr_2154 transcriptional regulator, LacI family 0.25 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Azospirillum sp. SherDot2 0.21 MPMX19_05875 Catabolite control protein A 0.13 MPMX19_02233 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.21 Psyr_2154 transcriptional regulator, LacI family 0.25 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas simiae WCS417 0.20 PS417_13650 LacI family transcriptional regulator 0.22 PS417_12855 3-phosphoshikimate 1-carboxyvinyltransferase low > 88
Rhodanobacter sp. FW510-T8 0.20 OKGIIK_15435 LacI family transcriptional regulator 0.18 OKGIIK_06920 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bacteroides ovatus ATCC 8483 0.20 BACOVA_02049 sugar-binding domain protein 0.25 BACOVA_03157 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bacteroides thetaiotaomicron VPI-5482 0.19 BT3613 LacI family transcriptional regulator (NCBI ptt file) 0.24 BT2186 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (from data) — —
Phocaeicola dorei CL03T12C01 0.19 ABI39_RS03985 LacI family DNA-binding transcriptional regulator 0.25 ABI39_RS09575 3-phosphoshikimate 1-carboxyvinyltransferase low > 72
Pedobacter sp. GW460-11-11-14-LB5 0.18 CA265_RS21915 LacI family transcriptional regulator 0.23 CA265_RS11640 3-phosphoshikimate 1-carboxyvinyltransferase — —
Phocaeicola vulgatus CL09T03C04 0.18 HMPREF1058_RS09530 LacI family DNA-binding transcriptional regulator 0.25 HMPREF1058_RS13970 3-phosphoshikimate 1-carboxyvinyltransferase low > 67
Bifidobacterium breve UCC2003 0.18 BBR_RS17775 LacI family DNA-binding transcriptional regulator 0.17 BBR_RS14370 3-phosphoshikimate 1-carboxyvinyltransferase low > 34
Bacteroides stercoris CC31F 0.17 HMPREF1181_RS05535 LacI family DNA-binding transcriptional regulator 0.25 HMPREF1181_RS09330 3-phosphoshikimate 1-carboxyvinyltransferase low > 56
Shewanella loihica PV-4 0.17 Shew_1111 LacI family transcription regulator (RefSeq) 0.55 Shew_1952 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) low > 60
Mycobacterium tuberculosis H37Rv 0.16 Rv3575c Transcriptional regulatory protein (probably LacI-family) 0.14 Rv3227 3-phosphoshikimate 1-carboxyvinyltransferase AroA (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) — —

Not shown: 10 genomes with orthologs for RR42_RS34650 only; 27 genomes with orthologs for RR42_RS04475 only