| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Cupriavidus basilensis FW507-4G11 | 1.0 | RR42_RS09395 | | multidrug transporter MatE | 1.0 | RR42_RS02730 | | tRNA-dihydrouridine synthase B | 0.32 | 12 |
| Paraburkholderia sabiae LMG 24235 | 0.64 | QEN71_RS04895 | | MATE family efflux transporter | 0.77 | QEN71_RS26770 | | tRNA dihydrouridine synthase DusB | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.63 | BPHYT_RS14080 | | multidrug transporter MatE | 0.75 | BPHYT_RS16585 | | tRNA-dihydrouridine synthase B | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.63 | H281DRAFT_04426 | | multidrug resistance protein, MATE family | 0.78 | H281DRAFT_04249 | | tRNA-U20-dihydrouridine synthase | low | > 103 |
| Ralstonia sp. UNC404CL21Col | 0.57 | ABZR87_RS22695 | | MATE family efflux transporter | 0.82 | ABZR87_RS07650 | | tRNA dihydrouridine synthase DusB | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.55 | RPSI07_RS01180 | | MATE family efflux transporter | 0.81 | RPSI07_RS21520 | | tRNA dihydrouridine synthase DusB | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.54 | RS_RS18520 | | MATE family efflux transporter | 0.81 | RS_RS02515 | | tRNA dihydrouridine synthase DusB | low | > 80 |
| Marinobacter adhaerens HP15 | 0.38 | HP15_3770 | | MATE efflux family protein | 0.53 | HP15_3225 | | tRNA-dihydrouridine synthase B | low | > 73 |
| Bacteroides stercoris CC31F | 0.36 | HMPREF1181_RS09420 | | MATE family efflux transporter | 0.31 | HMPREF1181_RS01530 | | tRNA dihydrouridine synthase DusB | low | > 56 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.36 | BT2241 | | DNA-damage-inducible protein F (NCBI ptt file) | 0.31 | BT3073 | | putative TIM-barrel enzyme, possible dehydrogenase, contains a highly conserved dihydrouridine synthase domain (NCBI ptt file) | low | > 81 |
| Vibrio cholerae E7946 ATCC 55056 | 0.35 | CSW01_00480 | | MATE family efflux transporter | 0.48 | CSW01_01495 | | tRNA dihydrouridine synthase DusB | low | > 62 |
| Bacteroides ovatus ATCC 8483 | 0.35 | BACOVA_03104 | | MATE efflux family protein | 0.31 | BACOVA_02724 | | TIM-barrel protein, nifR3 family | low | > 94 |
| Phocaeicola vulgatus CL09T03C04 | 0.34 | HMPREF1058_RS13880 | | MATE family efflux transporter | 0.32 | HMPREF1058_RS10945 | | tRNA dihydrouridine synthase DusB | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.33 | ABI39_RS09485 | | MATE family efflux transporter | 0.33 | ABI39_RS06125 | | tRNA dihydrouridine synthase DusB | low | > 72 |
| Dyella japonica UNC79MFTsu3.2 | 0.33 | ABZR86_RS00490 | | MATE family efflux transporter | 0.56 | ABZR86_RS11525 | | tRNA dihydrouridine synthase DusB | low | > 74 |
| Pseudomonas fluorescens FW300-N1B4 | 0.33 | Pf1N1B4_1292 | | DNA-damage-inducible protein F | 0.53 | Pf1N1B4_1313 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | low | > 87 |
| Parabacteroides merdae CL09T00C40 | 0.33 | HMPREF1078_RS15090 | | MATE family efflux transporter | 0.30 | HMPREF1078_RS05375 | | tRNA dihydrouridine synthase DusB | low | > 61 |
| Shewanella amazonensis SB2B | 0.32 | Sama_3501 | | DNA-damage-inducible protein F (RefSeq) | 0.50 | Sama_3225 | | tRNA-dihydrouridine synthase B (RefSeq) | low | > 62 |
| Serratia liquefaciens MT49 | 0.32 | IAI46_23000 | | MATE family efflux transporter DinF | 0.48 | IAI46_22775 | | tRNA dihydrouridine synthase DusB | low | > 86 |
| Pseudomonas simiae WCS417 | 0.32 | PS417_03010 | | XRE family transcriptional regulator | 0.53 | PS417_02950 | | tRNA-dihydrouridine synthase B | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.32 | PfGW456L13_40 | | DNA-damage-inducible protein F | 0.53 | PfGW456L13_55 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.32 | AO353_13735 | | MATE family efflux transporter | 0.54 | AO353_13660 | | tRNA-dihydrouridine synthase B | low | > 101 |
| Shewanella loihica PV-4 | 0.31 | Shew_0107 | | MATE efflux family protein (RefSeq) | 0.48 | Shew_0330 | | nifR3 family TIM-barrel protein (RefSeq) | low | > 60 |
| Shewanella oneidensis MR-1 | 0.31 | SO4617 | dinF | DNA-damage-inducible protein F (NCBI ptt file) | 0.49 | SO0394 | | conserved hypothetical protein (NCBI ptt file) | low | > 76 |
| Pseudomonas fluorescens FW300-N2E2 | 0.31 | Pf6N2E2_3500 | | DNA-damage-inducible protein F | 0.54 | Pf6N2E2_3517 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | low | > 103 |
| Rahnella sp. WP5 | 0.31 | EX31_RS11850 | | MATE family efflux transporter DinF | 0.50 | EX31_RS12180 | | tRNA dihydrouridine synthase DusB | low | > 89 |
| Pseudomonas syringae pv. syringae B728a | 0.31 | Psyr_4384 | | Multi antimicrobial extrusion protein MatE | 0.54 | Psyr_4404 | | tRNA-U20-dihydrouridine synthase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.31 | Psyr_4384 | | Multi antimicrobial extrusion protein MatE | 0.54 | Psyr_4404 | | tRNA-U20-dihydrouridine synthase | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.30 | AO356_08140 | | MATE family efflux transporter | 0.54 | AO356_08215 | | tRNA-dihydrouridine synthase B | low | > 104 |
| Pantoea sp. MT58 | 0.30 | IAI47_17885 | | MATE family efflux transporter DinF | 0.47 | IAI47_02385 | | tRNA dihydrouridine synthase DusB | low | > 76 |
| Pseudomonas stutzeri RCH2 | 0.30 | Psest_3364 | | putative efflux protein, MATE family | 0.54 | Psest_1016 | | putative TIM-barrel protein, nifR3 family | low | > 67 |
| Kangiella aquimarina DSM 16071 | 0.30 | B158DRAFT_0674 | | putative efflux protein, MATE family | 0.52 | B158DRAFT_0164 | | tRNA-U20-dihydrouridine synthase | low | > 40 |
| Pseudomonas fluorescens SBW25 | 0.30 | PFLU_RS03090 | | MATE family efflux transporter | 0.53 | PFLU_RS03025 | | tRNA dihydrouridine synthase DusB | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.30 | PFLU_RS03090 | | MATE family efflux transporter | 0.53 | PFLU_RS03025 | | tRNA dihydrouridine synthase DusB | low | > 109 |
| Enterobacter sp. TBS_079 | 0.29 | MPMX20_00260 | | DNA damage-inducible protein F | 0.49 | MPMX20_04169 | | tRNA-dihydrouridine synthase B | low | > 85 |
| Rhizobium sp. OAE497 | 0.29 | ABIE40_RS02425 | | MATE family efflux transporter | 0.32 | ABIE40_RS09080 | | tRNA dihydrouridine synthase DusB | low | > 107 |
| Shewanella sp. ANA-3 | 0.29 | Shewana3_4001 | | MATE efflux family protein (RefSeq) | 0.49 | Shewana3_0399 | | nifR3 family TIM-barrel protein (RefSeq) | low | > 73 |
| Enterobacter asburiae PDN3 | 0.29 | EX28DRAFT_4268 | | putative efflux protein, MATE family | 0.48 | EX28DRAFT_3313 | | putative TIM-barrel protein, nifR3 family | low | > 76 |
| Escherichia coli ECRC62 | 0.29 | BNILDI_06305 | dinF | MATE family efflux transporter DinF | 0.49 | BNILDI_02050 | dusB | tRNA dihydrouridine synthase DusB | low | > 75 |
| Escherichia coli ECOR27 | 0.29 | NOLOHH_05215 | dinF | MATE family efflux transporter DinF | 0.49 | NOLOHH_09470 | dusB | tRNA dihydrouridine synthase DusB | low | > 75 |
| Escherichia coli BL21 | 0.29 | ECD_03916 | | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein | 0.49 | ECD_03118 | | tRNA-dihydrouridine synthase B | low | > 61 |
| Escherichia coli BW25113 | 0.29 | b4044 | dinF | DNA-damage-inducible SOS response protein (NCBI) | 0.49 | b3260 | dusB | tRNA-dihydrouridine synthase B (NCBI) | low | > 76 |
| Pseudomonas putida KT2440 | 0.29 | PP_0569 | | MATE efflux family protein | 0.53 | PP_4820 | | tRNA-dihydrouridine synthase B | low | > 96 |
| Klebsiella michiganensis M5al | 0.29 | BWI76_RS01880 | | MATE family efflux transporter | 0.49 | BWI76_RS25565 | | tRNA dihydrouridine synthase DusB | — | — |
| Escherichia coli Nissle 1917 | 0.29 | ECOLIN_RS23340 | | MATE family efflux transporter DinF | 0.49 | ECOLIN_RS18725 | | tRNA dihydrouridine synthase DusB | low | > 55 |
| Escherichia fergusonii Becca | 0.29 | EFB2_04559 | | DNA damage-inducible protein F | 0.49 | EFB2_00564 | | tRNA-dihydrouridine synthase B | low | > 86 |
| Escherichia coli ECRC102 | 0.28 | NIAGMN_10810 | dinF | MATE family efflux transporter DinF | 0.49 | NIAGMN_15445 | dusB | tRNA dihydrouridine synthase DusB | — | — |
| Escherichia coli ECRC100 | 0.28 | OKFHMN_13060 | dinF | MATE family efflux transporter DinF | 0.49 | OKFHMN_17685 | dusB | tRNA dihydrouridine synthase DusB | low | > 80 |
| Escherichia coli ECRC99 | 0.28 | KEDOAH_15100 | dinF | MATE family efflux transporter DinF | 0.43 | KEDOAH_10465 | dusB | tRNA dihydrouridine synthase DusB | — | — |
| Escherichia coli ECRC101 | 0.28 | MCAODC_03560 | dinF | MATE family efflux transporter DinF | 0.49 | MCAODC_08205 | dusB | tRNA dihydrouridine synthase DusB | low | > 87 |
| Escherichia coli ECRC98 | 0.28 | JDDGAC_16685 | dinF | MATE family efflux transporter DinF | 0.43 | JDDGAC_21310 | dusB | tRNA dihydrouridine synthase DusB | low | > 86 |
| Pseudomonas sp. RS175 | 0.28 | PFR28_05231 | | DNA damage-inducible protein F | 0.54 | PFR28_05216 | | tRNA-dihydrouridine synthase B | low | > 88 |
| Alteromonas macleodii MIT1002 | 0.28 | MIT1002_04023 | | DNA-damage-inducible protein F | 0.52 | MIT1002_03957 | | putative tRNA-dihydrouridine synthase | low | > 70 |
| Sphingomonas koreensis DSMZ 15582 | 0.28 | Ga0059261_1394 | | putative efflux protein, MATE family | 0.38 | Ga0059261_0140 | | tRNA-U20-dihydrouridine synthase | low | > 68 |
| Escherichia coli ECOR38 | 0.27 | HEPCGN_11580 | dinF | MATE family efflux transporter DinF | 0.49 | HEPCGN_16505 | dusB | tRNA dihydrouridine synthase DusB | low | > 87 |
| Pseudomonas sp. S08-1 | 0.25 | OH686_07530 | | MATE efflux family protein | 0.56 | OH686_07610 | | tRNA-dihydrouridine synthase DusB | low | > 80 |
Not shown: 8 genomes with orthologs for RR42_RS09395 only; 30 genomes with orthologs for RR42_RS02730 only