| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Cupriavidus basilensis FW507-4G11 | 1.0 | RR42_RS09010 | | FAD-dependent cmnm(5)s(2)U34 oxidoreductase | 1.0 | RR42_RS01860 | | amidophosphoribosyltransferase | 0.49 | 9 |
| Ralstonia sp. UNC404CL21Col | 0.52 | ABZR87_RS12805 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.38 | ABZR87_RS06780 | | ComF family protein | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.52 | RPSI07_RS16115 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.43 | RPSI07_RS22380 | | amidophosphoribosyltransferase | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.51 | RALBFv3_RS01360 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.43 | RALBFv3_RS10930 | | amidophosphoribosyltransferase | — | — |
| Ralstonia solanacearum UW163 | 0.51 | UW163_RS14670 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.43 | UW163_RS02650 | | amidophosphoribosyltransferase | — | — |
| Ralstonia solanacearum GMI1000 | 0.51 | RS_RS08635 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.39 | RS_RS01770 | | amidophosphoribosyltransferase | low | > 80 |
| Paraburkholderia graminis OAS925 | 0.43 | ABIE53_000291 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein | 0.36 | ABIE53_000670 | | ComF family protein | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.42 | BPHYT_RS19575 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | 0.40 | BPHYT_RS02625 | | competence protein ComF | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.42 | QEN71_RS29485 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.37 | QEN71_RS01480 | | ComF family protein | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.42 | H281DRAFT_02360 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein | 0.38 | H281DRAFT_01997 | | comF family protein | low | > 103 |
| Dechlorosoma suillum PS | 0.35 | Dsui_2868 | | tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain protein | 0.24 | Dsui_1296 | | putative amidophosphoribosyltransferase | low | > 51 |
| Castellaniella sp019104865 MT123 | 0.25 | ABCV34_RS09580 | | FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.16 | ABCV34_RS14240 | | phosphoribosyltransferase family protein | low | > 48 |
| Pseudomonas fluorescens FW300-N2C3 | 0.25 | AO356_03570 | | FAD-dependent cmnm(5)s(2)U34 oxidoreductase | 0.25 | AO356_14130 | | amidophosphoribosyltransferase | low | > 104 |
| Pseudomonas stutzeri RCH2 | 0.25 | Psest_1634 | | tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain | 0.27 | Psest_0410 | | Predicted amidophosphoribosyltransferases | low | > 67 |
| Pseudomonas fluorescens FW300-N1B4 | 0.24 | Pf1N1B4_373 | | 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC | 0.28 | Pf1N1B4_2485 | | Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy | low | > 87 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.24 | Psyr_3742 | | FAD dependent oxidoreductase:Protein of unknown function DUF752 | 0.25 | Psyr_4688 | | Phosphoribosyltransferase | low | > 86 |
| Escherichia coli ECRC98 | 0.24 | JDDGAC_26600 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.21 | JDDGAC_20625 | gntX | DNA utilization protein GntX | low | > 86 |
| Escherichia coli ECRC100 | 0.24 | OKFHMN_22640 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.21 | OKFHMN_16995 | gntX | DNA utilization protein GntX | 0.55 | 78 |
| Pseudomonas syringae pv. syringae B728a | 0.24 | Psyr_3742 | | FAD dependent oxidoreductase:Protein of unknown function DUF752 | 0.25 | Psyr_4688 | | Phosphoribosyltransferase | low | > 86 |
| Escherichia coli ECRC99 | 0.24 | KEDOAH_05555 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.21 | KEDOAH_11145 | gntX | DNA utilization protein GntX | — | — |
| Escherichia coli ECRC101 | 0.24 | MCAODC_13680 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.21 | MCAODC_07525 | gntX | DNA utilization protein GntX | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.24 | Pf6N2E2_2541 | | 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC | 0.25 | Pf6N2E2_4758 | | Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy | low | > 103 |
| Escherichia coli ECRC102 | 0.24 | NIAGMN_20415 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.21 | NIAGMN_14765 | gntX | DNA utilization protein GntX | — | — |
| Escherichia fergusonii Becca | 0.24 | EFB2_01534 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | 0.21 | EFB2_00415 | | Putative ribose-phosphate pyrophosphokinase | low | > 86 |
| Escherichia coli Nissle 1917 | 0.24 | ECOLIN_RS13465 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.21 | ECOLIN_RS19495 | | DNA utilization protein GntX | low | > 55 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.24 | OHPLBJKB_01381 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | 0.21 | OHPLBJKB_00290 | | hypothetical protein | low | > 73 |
| Pseudomonas fluorescens FW300-N2E3 | 0.24 | AO353_02165 | | FAD-dependent cmnm(5)s(2)U34 oxidoreductase | 0.28 | AO353_07530 | | amidophosphoribosyltransferase | low | > 101 |
| Pseudomonas sp. S08-1 | 0.24 | OH686_20990 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase / FAD-dependent cmnm(5)s(2)U34 oxidoreductase | 0.24 | OH686_10360 | | Competence protein F-related, phosphoribosyltransferase domain / protein YhgH required for utilization of DNA as sole source of carbon and energy | low | > 80 |
| Escherichia coli ECRC62 | 0.24 | BNILDI_13195 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.21 | BNILDI_02735 | gntX | DNA utilization protein GntX | low | > 75 |
| Escherichia coli BW25113 | 0.24 | b2324 | b2324 | putative peptidase (VIMSS) | 0.21 | b3413 | yhgH | orf, hypothetical protein (VIMSS) | low | > 76 |
| Escherichia coli ECOR38 | 0.24 | HEPCGN_21845 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.21 | HEPCGN_15805 | gntX | DNA utilization protein GntX | low | > 87 |
| Pseudomonas simiae WCS417 | 0.24 | PS417_19225 | | FAD-dependent cmnm(5)s(2)U34 oxidoreductase | 0.29 | PS417_26010 | | amidophosphoribosyltransferase | low | > 88 |
| Escherichia coli ECOR27 | 0.24 | NOLOHH_14275 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.21 | NOLOHH_08780 | gntX | DNA utilization protein GntX | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.23 | GFF1945 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase | 0.22 | GFF604 | | Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy | low | > 78 |
| Escherichia coli BL21 | 0.23 | ECD_02249 | | fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme | 0.21 | ECD_03265 | | DNA catabolic protein | low | > 61 |
| Pseudomonas sp. RS175 | 0.23 | PFR28_00884 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | 0.28 | PFR28_04104 | | hypothetical protein | low | > 88 |
| Vibrio cholerae E7946 ATCC 55056 | 0.23 | CSW01_10535 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.20 | CSW01_13720 | | DNA utilization protein GntX | low | > 62 |
| Pseudomonas fluorescens GW456-L13 | 0.23 | PfGW456L13_2155 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase | 0.27 | PfGW456L13_1146 | | Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy | low | > 87 |
| Pantoea sp. MT58 | 0.23 | IAI47_06175 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.23 | IAI47_01785 | | DNA utilization protein GntX | low | > 76 |
| Dickeya dadantii 3937 | 0.23 | DDA3937_RS14515 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.23 | DDA3937_RS19650 | | DNA utilization protein GntX | low | > 74 |
| Serratia liquefaciens MT49 | 0.23 | IAI46_18000 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.25 | IAI46_23830 | | DNA utilization protein GntX | low | > 86 |
| Dickeya dianthicola ME23 | 0.23 | DZA65_RS15420 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.21 | DZA65_RS20870 | | DNA utilization protein GntX | low | > 75 |
| Enterobacter asburiae PDN3 | 0.23 | EX28DRAFT_0280 | | tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain | 0.21 | EX28DRAFT_4129 | | Predicted amidophosphoribosyltransferases | low | > 76 |
| Dickeya dianthicola 67-19 | 0.23 | HGI48_RS14485 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.21 | HGI48_RS19780 | | DNA utilization protein GntX | low | > 71 |
| Herbaspirillum seropedicae SmR1 | 0.22 | HSERO_RS23825 | | hypothetical protein | 0.33 | HSERO_RS20810 | | amidophosphoribosyltransferase | low | > 78 |
| Pseudomonas putida KT2440 | 0.22 | PP_1751 | | methyltransferase/FAD-dependent oxidoreductase | 0.27 | PP_0361 | | putative Competence protein ComF | low | > 96 |
| Klebsiella michiganensis M5al | 0.22 | BWI76_RS20410 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.22 | BWI76_RS26625 | | gluconate transporter periplasmic gluconate-binding protein | low | > 92 |
| Enterobacter sp. TBS_079 | 0.22 | MPMX20_03259 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | 0.21 | MPMX20_04300 | | Putative ribose-phosphate pyrophosphokinase | low | > 85 |
| Acidovorax sp. GW101-3H11 | 0.22 | Ac3H11_579 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase | 0.21 | Ac3H11_3895 | | Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy | low | > 79 |
| Variovorax sp. SCN45 | 0.22 | GFF1245 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase | 0.25 | GFF2294 | | Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy | low | > 127 |
| Pseudomonas fluorescens SBW25 | 0.22 | PFLU_RS21190 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.28 | PFLU_RS27655 | | ComF family protein | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.22 | PFLU_RS21190 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.28 | PFLU_RS27655 | | ComF family protein | low | > 109 |
| Rahnella sp. WP5 | 0.21 | EX31_RS19660 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.27 | EX31_RS04920 | | DNA utilization protein GntX | low | > 89 |
| Erwinia tracheiphila SCR3 | 0.21 | LU632_RS07800 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.21 | LU632_RS22980 | | phosphoribosyltransferase | low | > 74 |
| Marinobacter adhaerens HP15 | 0.21 | HP15_1540 | | protein YfcK | 0.23 | HP15_2487 | | competence protein ComF | low | > 73 |
| Variovorax sp. OAS795 | 0.20 | ABID97_RS15455 | | FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.24 | ABID97_RS23980 | | ComF family protein | low | > 91 |
| Kangiella aquimarina DSM 16071 | 0.13 | B158DRAFT_1306 | | Uncharacterized conserved protein | 0.23 | B158DRAFT_0863 | | Predicted amidophosphoribosyltransferases | low | > 40 |
| Shewanella sp. ANA-3 | 0.11 | Shewana3_1474 | | FAD dependent oxidoreductase (RefSeq) | 0.21 | Shewana3_4009 | | competence protein ComF (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.10 | SO3073 | | conserved hypothetical protein (NCBI ptt file) | 0.21 | SO4625 | comF | competence protein ComF (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.09 | Shew_2411 | | FAD dependent oxidoreductase (RefSeq) | 0.21 | Shew_3629 | | competence protein ComF (RefSeq) | low | > 60 |
Not shown: 5 genomes with orthologs for RR42_RS09010 only; 26 genomes with orthologs for RR42_RS01860 only