| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Paraburkholderia sabiae LMG 24235 | 1.0 | QEN71_RS26595 | | YggS family pyridoxal phosphate-dependent enzyme | 1.0 | QEN71_RS26925 | | MurR/RpiR family transcriptional regulator | 0.51 | 11 |
| Paraburkholderia graminis OAS925 | 0.87 | ABIE53_000841 | | pyridoxal phosphate enzyme (YggS family) | 0.82 | ABIE53_003518 | | RpiR family carbohydrate utilization transcriptional regulator | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.87 | H281DRAFT_04680 | | hypothetical protein | 0.94 | H281DRAFT_04279 | | transcriptional regulator, RpiR family | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.85 | BPHYT_RS03495 | | hypothetical protein | 0.83 | BPHYT_RS16740 | | transcriptional regulator | low | > 109 |
| Herbaspirillum seropedicae SmR1 | 0.62 | HSERO_RS18995 | | hypothetical protein | 0.39 | HSERO_RS05505 | | transcriptional regulator | low | > 78 |
| Pseudomonas sp. S08-1 | 0.62 | OH686_10975 | | Pyridoxal phosphate-containing protein YggS | 0.39 | OH686_13095 | | Transcriptional regulator, RpiR family | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.61 | RR42_RS17355 | | hypothetical protein | 0.57 | RR42_RS06120 | | transcriptional regulator | low | > 128 |
| Pseudomonas syringae pv. syringae B728a | 0.59 | Psyr_0477 | | Protein of unknown function UPF0001 | 0.39 | Psyr_5064 | | transcriptional regulator, RpiR family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.59 | Psyr_0477 | | Protein of unknown function UPF0001 | 0.39 | Psyr_5064 | | transcriptional regulator, RpiR family | low | > 86 |
| Pseudomonas fluorescens SBW25-INTG | 0.58 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | 0.39 | PFLU_RS29890 | | transcriptional regulator HexR | 0.20 | 56 |
| Pseudomonas fluorescens SBW25 | 0.58 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | 0.39 | PFLU_RS29890 | | transcriptional regulator HexR | low | > 109 |
| Pseudomonas putida KT2440 | 0.58 | PP_5094 | | putative enzyme with PLP binding domain | 0.40 | PP_5350 | | Transcriptional regulator, RpiR family | 0.23 | 6 |
| Pseudomonas simiae WCS417 | 0.58 | PS417_26725 | | hypothetical protein | 0.39 | PS417_28230 | | transcriptional regulator | low | > 88 |
| Shewanella loihica PV-4 | 0.57 | Shew_1137 | | alanine racemase domain-containing protein (RefSeq) | 0.36 | Shew_2049 | | DNA-binding transcriptional regulator HexR (RefSeq) | low | > 60 |
| Pseudomonas fluorescens FW300-N1B4 | 0.57 | Pf1N1B4_2342 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.40 | Pf1N1B4_2008 | | Phosphogluconate repressor HexR, RpiR family | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.57 | AO356_13425 | | hypothetical protein | 0.39 | AO356_12005 | | transcriptional regulator | low | > 104 |
| Pseudomonas fluorescens GW456-L13 | 0.56 | PfGW456L13_1011 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.40 | PfGW456L13_726 | | Phosphogluconate repressor HexR, RpiR family | low | > 87 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.56 | GFF3054 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.36 | GFF1632 | | Phosphogluconate repressor HexR, RpiR family | 0.72 | 64 |
| Pseudomonas stutzeri RCH2 | 0.56 | Psest_0284 | | pyridoxal phosphate enzyme, YggS family | 0.39 | Psest_4088 | | Transcriptional regulators | low | > 67 |
| Pantoea sp. MT58 | 0.55 | IAI47_03595 | | YggS family pyridoxal phosphate-dependent enzyme | 0.34 | IAI47_08490 | | MurR/RpiR family transcriptional regulator | low | > 76 |
| Klebsiella michiganensis M5al | 0.55 | BWI76_RS24100 | | YggS family pyridoxal phosphate enzyme | 0.34 | BWI76_RS18110 | | transcriptional regulator HexR | low | > 92 |
| Dickeya dianthicola ME23 | 0.55 | DZA65_RS18435 | | YggS family pyridoxal phosphate-dependent enzyme | 0.36 | DZA65_RS10575 | | MurR/RpiR family transcriptional regulator | low | > 75 |
| Pseudomonas sp. RS175 | 0.55 | PFR28_04242 | | Pyridoxal phosphate homeostasis protein | 0.39 | PFR28_04521 | | HTH-type transcriptional regulator HexR | low | > 88 |
| Dickeya dadantii 3937 | 0.55 | DDA3937_RS17300 | | YggS family pyridoxal phosphate-dependent enzyme | 0.36 | DDA3937_RS10130 | | MurR/RpiR family transcriptional regulator | low | > 74 |
| Shewanella oneidensis MR-1 | 0.54 | SO3352 | | conserved hypothetical protein TIGR00044 (NCBI ptt file) | 0.35 | SO2490 | | transcriptional regulator, RpiR family (NCBI ptt file) | low | > 76 |
| Enterobacter asburiae PDN3 | 0.54 | EX28DRAFT_2989 | | pyridoxal phosphate enzyme, YggS family | 0.36 | EX28DRAFT_0703 | | transcriptional regulator, RpiR family | low | > 76 |
| Dickeya dianthicola 67-19 | 0.54 | HGI48_RS17345 | | YggS family pyridoxal phosphate-dependent enzyme | 0.36 | HGI48_RS10160 | | MurR/RpiR family transcriptional regulator | low | > 71 |
| Pseudomonas fluorescens FW300-N2E3 | 0.54 | AO353_08160 | | hypothetical protein | 0.40 | AO353_10040 | | transcriptional regulator | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.54 | Pf6N2E2_4601 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.39 | Pf6N2E2_4276 | | Phosphogluconate repressor HexR, RpiR family | low | > 103 |
| Escherichia fergusonii Becca | 0.54 | EFB2_00951 | | Pyridoxal phosphate homeostasis protein | 0.36 | EFB2_02089 | | HTH-type transcriptional regulator HexR | low | > 86 |
| Shewanella sp. ANA-3 | 0.54 | Shewana3_1194 | | hypothetical protein (RefSeq) | 0.35 | Shewana3_2152 | | DNA-binding transcriptional regulator HexR (RefSeq) | low | > 73 |
| Escherichia coli ECOR38 | 0.54 | HEPCGN_18560 | yggS | pyridoxal phosphate homeostasis protein | 0.36 | HEPCGN_04730 | hexR | DNA-binding transcriptional regulator HexR | low | > 87 |
| Escherichia coli ECRC101 | 0.54 | MCAODC_09775 | yggS | pyridoxal phosphate homeostasis protein | 0.36 | MCAODC_19080 | hexR | DNA-binding transcriptional regulator HexR | low | > 87 |
| Escherichia coli BW25113 | 0.54 | b2951 | yggS | predicted enzyme (NCBI) | 0.36 | b1853 | yebK | predicted DNA-binding transcriptional regulator (NCBI) | low | > 76 |
| Escherichia coli Nissle 1917 | 0.54 | ECOLIN_RS16415 | | pyridoxal phosphate homeostasis protein | 0.36 | ECOLIN_RS10325 | | DNA-binding transcriptional regulator HexR | low | > 55 |
| Escherichia coli ECOR27 | 0.54 | NOLOHH_11125 | yggS | pyridoxal phosphate homeostasis protein | 0.36 | NOLOHH_16840 | hexR | DNA-binding transcriptional regulator HexR | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.54 | OHPLBJKB_00765 | | Pyridoxal phosphate homeostasis protein | 0.36 | OHPLBJKB_01875 | | HTH-type transcriptional regulator HexR | low | > 73 |
| Escherichia coli ECRC102 | 0.54 | NIAGMN_17020 | yggS | pyridoxal phosphate homeostasis protein | 0.36 | NIAGMN_01735 | hexR | DNA-binding transcriptional regulator HexR | — | — |
| Escherichia coli ECRC98 | 0.54 | JDDGAC_22885 | yggS | pyridoxal phosphate homeostasis protein | 0.36 | JDDGAC_00900 | hexR | DNA-binding transcriptional regulator HexR | low | > 86 |
| Escherichia coli ECRC100 | 0.54 | OKFHMN_19255 | yggS | pyridoxal phosphate homeostasis protein | 0.36 | OKFHMN_26325 | hexR | DNA-binding transcriptional regulator HexR | low | > 80 |
| Escherichia coli BL21 | 0.54 | ECD_02781 | | UPF0001 family protein, PLP-binding | 0.36 | ECD_01824 | | putative DNA-binding transcriptional regulator | low | > 61 |
| Escherichia coli ECRC62 | 0.54 | BNILDI_09705 | yggS | pyridoxal phosphate homeostasis protein | 0.36 | BNILDI_15635 | hexR | DNA-binding transcriptional regulator HexR | low | > 75 |
| Escherichia coli ECRC99 | 0.53 | KEDOAH_08885 | yggS | pyridoxal phosphate homeostasis protein | 0.36 | KEDOAH_01780 | hexR | DNA-binding transcriptional regulator HexR | — | — |
| Erwinia tracheiphila SCR3 | 0.53 | LU632_RS05460 | | YggS family pyridoxal phosphate-dependent enzyme | 0.31 | LU632_RS13365 | | MurR/RpiR family transcriptional regulator | low | > 74 |
| Enterobacter sp. TBS_079 | 0.53 | MPMX20_03809 | | Pyridoxal phosphate homeostasis protein | 0.36 | MPMX20_02758 | | HTH-type transcriptional regulator HexR | low | > 85 |
| Vibrio cholerae E7946 ATCC 55056 | 0.51 | CSW01_02455 | | YggS family pyridoxal phosphate enzyme | 0.34 | CSW01_05825 | | transcriptional regulator HexR | low | > 62 |
| Marinobacter adhaerens HP15 | 0.51 | HP15_288 | | alanine racemase domain protein | 0.37 | HP15_2180 | | transcriptional regulator, RpiR family protein | low | > 73 |
| Shewanella amazonensis SB2B | 0.50 | Sama_2477 | | hypothetical protein (RefSeq) | 0.36 | Sama_1813 | | DNA-binding transcriptional regulator HexR (RefSeq) | 0.40 | 29 |
| Lysobacter sp. OAE881 | 0.40 | ABIE51_RS16060 | | YggS family pyridoxal phosphate-dependent enzyme | 0.14 | ABIE51_RS13700 | | MurR/RpiR family transcriptional regulator | low | > 62 |
| Dyella japonica UNC79MFTsu3.2 | 0.34 | ABZR86_RS09305 | | YggS family pyridoxal phosphate-dependent enzyme | 0.10 | ABZR86_RS12100 | | MurR/RpiR family transcriptional regulator | — | — |
| Rhodanobacter denitrificans MT42 | 0.34 | LRK55_RS08955 | | YggS family pyridoxal phosphate-dependent enzyme | 0.12 | LRK55_RS11245 | | MurR/RpiR family transcriptional regulator | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.33 | LRK54_RS02905 | | YggS family pyridoxal phosphate-dependent enzyme | 0.12 | LRK54_RS11515 | | MurR/RpiR family transcriptional regulator | low | > 59 |
| Azospirillum brasilense Sp245 | 0.31 | AZOBR_RS01870 | | alanine racemase | 0.56 | AZOBR_RS30190 | | transcriptional regulator | — | — |
| Rhodanobacter sp. FW510-T8 | 0.30 | OKGIIK_09885 | | Pyridoxal phosphate homeostasis protein | 0.12 | OKGIIK_12345 | rpiR | transcriptional regulator | low | > 52 |
| Azospirillum sp. SherDot2 | 0.30 | MPMX19_00050 | | Pyridoxal phosphate homeostasis protein | 0.53 | MPMX19_04844 | | HTH-type transcriptional regulator HexR | low | > 112 |
| Sinorhizobium meliloti 1021 | 0.29 | SMc02812 | | hypothetical protein | 0.36 | SMc02460 | | hypothetical protein | low | > 103 |
Not shown: 46 genomes with orthologs for QEN71_RS26595 only; 0 genomes with orthologs for QEN71_RS26925 only