| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Paraburkholderia sabiae LMG 24235 | 1.0 | QEN71_RS27790 | | Nif3-like dinuclear metal center hexameric protein | 1.0 | QEN71_RS06455 | | RIP metalloprotease RseP | 0.54 | 11 |
| Paraburkholderia graminis OAS925 | 0.81 | ABIE53_003686 | | dinuclear metal center YbgI/SA1388 family protein | 0.79 | ABIE53_002496 | | regulator of sigma E protease | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.80 | H281DRAFT_05668 | | dinuclear metal center protein, YbgI/SA1388 family | 0.81 | H281DRAFT_00617 | | site-2 protease. Metallo peptidase. MEROPS family M50B | — | — |
| Burkholderia phytofirmans PsJN | 0.79 | BPHYT_RS17635 | | metal-binding protein | 0.82 | BPHYT_RS12105 | | zinc metalloprotease | — | — |
| Ralstonia sp. UNC404CL21Col | 0.65 | ABZR87_RS02395 | | Nif3-like dinuclear metal center hexameric protein | 0.39 | ABZR87_RS11860 | | RIP metalloprotease RseP | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.65 | RPSI07_RS10495 | | Nif3-like dinuclear metal center hexameric protein | 0.39 | RPSI07_RS17065 | | RIP metalloprotease RseP | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.64 | RS_RS14685 | | Nif3-like dinuclear metal center hexameric protein | 0.39 | RS_RS07080 | | RIP metalloprotease RseP | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.64 | RALBFv3_RS06740 | | Nif3-like dinuclear metal center hexameric protein | 0.41 | RALBFv3_RS00410 | | RIP metalloprotease RseP | low | > 76 |
| Ralstonia solanacearum UW163 | 0.64 | UW163_RS06875 | | Nif3-like dinuclear metal center hexameric protein | 0.41 | UW163_RS13740 | | RIP metalloprotease RseP | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.64 | RR42_RS18835 | | Nif3-like dinuclear metal center hexameric protein | 0.43 | RR42_RS11840 | | zinc metalloprotease | low | > 128 |
| Herbaspirillum seropedicae SmR1 | 0.58 | HSERO_RS20255 | | metal-binding protein | 0.41 | HSERO_RS10910 | | peptidase | low | > 78 |
| Castellaniella sp019104865 MT123 | 0.55 | ABCV34_RS12645 | | Nif3-like dinuclear metal center hexameric protein | 0.35 | ABCV34_RS04075 | | RIP metalloprotease RseP | low | > 48 |
| Dechlorosoma suillum PS | 0.54 | Dsui_1427 | | dinuclear metal center protein, YbgI/SA1388 family | 0.36 | Dsui_2687 | | RIP metalloprotease RseP | low | > 51 |
| Pseudomonas putida KT2440 | 0.52 | PP_1302 | | putative metal-binding hydrolase-oxidase enzyme | 0.32 | PP_1598 | | regulatory intramembrane protein RIP zinc protease | low | > 96 |
| Shewanella sp. ANA-3 | 0.52 | Shewana3_1758 | | hypothetical protein (RefSeq) | 0.34 | Shewana3_2808 | | peptidase RseP (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.52 | SO2621 | | conserved hypothetical protein TIGR00486 (NCBI ptt file) | 0.34 | SO1636 | | membrane-associated zinc metalloprotease, putative (NCBI ptt file) | — | — |
| Pseudomonas stutzeri RCH2 | 0.51 | Psest_3295 | | dinuclear metal center protein, YbgI/SA1388 family | 0.34 | Psest_2835 | | RIP metalloprotease RseP | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.51 | GFF1298 | | FIG137478: Hypothetical protein YbgI | 0.37 | GFF4908 | | Membrane-associated zinc metalloprotease | low | > 90 |
| Pseudomonas fluorescens FW300-N2E3 | 0.51 | AO353_05085 | | metal-binding protein | 0.33 | AO353_16495 | | zinc metallopeptidase RseP | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.51 | Pf6N2E2_5256 | | FIG137478: Hypothetical protein YbgI | 0.34 | Pf6N2E2_3062 | | Membrane-associated zinc metalloprotease | low | > 103 |
| Alteromonas macleodii MIT1002 | 0.51 | MIT1002_01972 | | metal-binding protein | 0.31 | MIT1002_01011 | | Regulator of sigma E protease | low | > 70 |
| Pseudomonas sp. RS175 | 0.51 | PFR28_00192 | | GTP cyclohydrolase 1 type 2 | 0.34 | PFR28_00403 | | Regulator of sigma-E protease RseP | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.51 | AO356_16660 | | metal-binding protein | 0.34 | AO356_06005 | | zinc metallopeptidase RseP | low | > 104 |
| Shewanella loihica PV-4 | 0.51 | Shew_1572 | | hypothetical protein (RefSeq) | 0.31 | Shew_2628 | | putative membrane-associated zinc metalloprotease (RefSeq) | — | — |
| Pseudomonas sp. S08-1 | 0.51 | OH686_08455 | | GTP cyclohydrolase 1 type 2-related YbgI | 0.31 | OH686_06450 | | RIP metalloprotease RseP | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.50 | PfGW456L13_4997 | | FIG137478: Hypothetical protein YbgI | 0.33 | PfGW456L13_4701 | | Membrane-associated zinc metalloprotease | low | > 87 |
| Pseudomonas simiae WCS417 | 0.50 | PS417_03710 | | metal-binding protein | 0.33 | PS417_06245 | | zinc metallopeptidase RseP | low | > 88 |
| Shewanella amazonensis SB2B | 0.49 | Sama_2050 | | hypothetical protein (RefSeq) | 0.34 | Sama_1146 | | membrane-associated zinc metalloprotease, putative (RefSeq) | low | > 62 |
| Pseudomonas fluorescens SBW25 | 0.49 | PFLU_RS03760 | | Nif3-like dinuclear metal center hexameric protein | 0.33 | PFLU_RS06310 | | sigma E protease regulator RseP | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.49 | PFLU_RS03760 | | Nif3-like dinuclear metal center hexameric protein | 0.33 | PFLU_RS06310 | | sigma E protease regulator RseP | low | > 109 |
| Pseudomonas syringae pv. syringae B728a | 0.49 | Psyr_4129 | | Protein of unknown function DUF34 | 0.33 | Psyr_1350 | | site-2 protease, Metallo peptidase, MEROPS family M50B | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.49 | Psyr_4129 | | Protein of unknown function DUF34 | 0.33 | Psyr_1350 | | site-2 protease, Metallo peptidase, MEROPS family M50B | low | > 86 |
| Rahnella sp. WP5 | 0.48 | EX31_RS23375 | | type 2 GTP cyclohydrolase I | 0.31 | EX31_RS13000 | | sigma E protease regulator RseP | — | — |
| Serratia liquefaciens MT49 | 0.48 | IAI46_06210 | | type 2 GTP cyclohydrolase I | 0.31 | IAI46_20225 | | sigma E protease regulator RseP | — | — |
| Erwinia tracheiphila SCR3 | 0.48 | LU632_RS16150 | | type 2 GTP cyclohydrolase I | 0.31 | LU632_RS19930 | rseP | sigma E protease regulator RseP | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.48 | CSW01_10460 | | Nif3-like dinuclear metal center hexameric protein | 0.30 | CSW01_11475 | | zinc metalloprotease | — | — |
| Enterobacter sp. TBS_079 | 0.48 | MPMX20_01344 | | GTP cyclohydrolase 1 type 2 | 0.31 | MPMX20_00860 | | Regulator of sigma-E protease RseP | — | — |
| Marinobacter adhaerens HP15 | 0.48 | HP15_2426 | | NGG1p interacting factor 3, NIF3 | 0.31 | HP15_1173 | | membrane-associated zinc metalloprotease | low | > 73 |
| Enterobacter asburiae PDN3 | 0.47 | EX28DRAFT_2277 | | dinuclear metal center protein, YbgI/SA1388 family | 0.32 | EX28DRAFT_3764 | | RIP metalloprotease RseP | — | — |
| Pectobacterium carotovorum WPP14 | 0.47 | HER17_RS14990 | | type 2 GTP cyclohydrolase I | 0.30 | HER17_RS16300 | | sigma E protease regulator RseP | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.47 | GFF4615 | | FIG137478: Hypothetical protein YbgI | 0.32 | GFF46 | | Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage | — | — |
| Escherichia coli ECOR38 | 0.47 | HEPCGN_01200 | ybgI | radiation resistance protein YbgI | 0.33 | HEPCGN_08130 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli Nissle 1917 | 0.47 | ECOLIN_RS03800 | | radiation resistance protein YbgI | 0.33 | ECOLIN_RS00960 | | sigma E protease regulator RseP | — | — |
| Escherichia coli BW25113 | 0.47 | b0710 | ybgI | conserved metal-binding protein (NCBI) | 0.33 | b0176 | yaeL | zinc metallopeptidase (NCBI) | — | — |
| Escherichia coli ECOR27 | 0.47 | NOLOHH_23395 | ybgI | radiation resistance protein YbgI | 0.33 | NOLOHH_02520 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli ECRC98 | 0.47 | JDDGAC_10665 | ybgI | radiation resistance protein YbgI | 0.33 | JDDGAC_13770 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli ECRC101 | 0.47 | MCAODC_26230 | ybgI | radiation resistance protein YbgI | 0.33 | MCAODC_00690 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli ECRC100 | 0.47 | OKFHMN_07010 | ybgI | radiation resistance protein YbgI | 0.33 | OKFHMN_10175 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.47 | OHPLBJKB_03007 | | GTP cyclohydrolase 1 type 2 | 0.33 | OHPLBJKB_03487 | | Regulator of sigma-E protease RseP | — | — |
| Escherichia fergusonii Becca | 0.47 | EFB2_03393 | | GTP cyclohydrolase 1 type 2 | 0.33 | EFB2_03868 | | Regulator of sigma-E protease RseP | — | — |
| Escherichia coli ECRC62 | 0.47 | BNILDI_21390 | ybgI | radiation resistance protein YbgI | 0.33 | BNILDI_09150 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli ECRC99 | 0.47 | KEDOAH_20955 | ybgI | radiation resistance protein YbgI | 0.33 | KEDOAH_17980 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli ECRC102 | 0.47 | NIAGMN_05065 | ybgI | radiation resistance protein YbgI | 0.33 | NIAGMN_08025 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli BL21 | 0.47 | ECD_00670 | | NIF3 family metal-binding protein | 0.33 | ECD_00174 | | inner membrane zinc RIP metalloprotease; RpoE activator, by degrading RseA; cleaved signal peptide endoprotease | — | — |
| Klebsiella michiganensis M5al | 0.46 | BWI76_RS08345 | | Nif3-like dinuclear metal center protein | 0.32 | BWI76_RS05250 | | zinc metallopeptidase RseP | — | — |
| Variovorax sp. SCN45 | 0.46 | GFF5367 | | GTP cyclohydrolase 1 type 2 homolog YbgI | 0.41 | GFF386 | | Membrane-associated zinc metalloprotease | low | > 127 |
| Pantoea sp. MT58 | 0.45 | IAI47_13810 | | type 2 GTP cyclohydrolase I | 0.30 | IAI47_15495 | | sigma E protease regulator RseP | — | — |
| Dickeya dadantii 3937 | 0.45 | DDA3937_RS06410 | | type 2 GTP cyclohydrolase I | 0.29 | DDA3937_RS05150 | | sigma E protease regulator RseP | low | > 74 |
| Acidovorax sp. GW101-3H11 | 0.44 | Ac3H11_4745 | | FIG137478: Hypothetical protein YbgI | 0.37 | Ac3H11_425 | | Membrane-associated zinc metalloprotease | — | — |
| Dickeya dianthicola 67-19 | 0.43 | HGI48_RS06455 | | type 2 GTP cyclohydrolase I | 0.29 | HGI48_RS05150 | | sigma E protease regulator RseP | low | > 71 |
| Dickeya dianthicola ME23 | 0.43 | DZA65_RS06800 | | type 2 GTP cyclohydrolase I | 0.29 | DZA65_RS05490 | | sigma E protease regulator RseP | low | > 75 |
| Variovorax sp. OAS795 | 0.43 | ABID97_RS23060 | | Nif3-like dinuclear metal center hexameric protein | 0.42 | ABID97_RS17135 | | RIP metalloprotease RseP | low | > 91 |
| Acinetobacter radioresistens SK82 | 0.38 | MPMX26_00997 | | GTP cyclohydrolase 1 type 2 | 0.32 | MPMX26_01300 | | Regulator of sigma-E protease RseP | low | > 36 |
Not shown: 3 genomes with orthologs for QEN71_RS27790 only; 20 genomes with orthologs for QEN71_RS06455 only