Conservation of cofitness between QEN71_RS27790 and QEN71_RS01300 in Paraburkholderia sabiae LMG 24235

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Paraburkholderia sabiae LMG 24235 1.0 QEN71_RS27790 Nif3-like dinuclear metal center hexameric protein 1.0 QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein 0.71 1
Paraburkholderia graminis OAS925 0.81 ABIE53_003686 dinuclear metal center YbgI/SA1388 family protein 0.88 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) low > 113
Paraburkholderia bryophila 376MFSha3.1 0.80 H281DRAFT_05668 dinuclear metal center protein, YbgI/SA1388 family 0.86 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 low > 103
Burkholderia phytofirmans PsJN 0.79 BPHYT_RS17635 metal-binding protein 0.87 BPHYT_RS02415 cytochrome C550 low > 109
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS02395 Nif3-like dinuclear metal center hexameric protein 0.56 ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein low > 80
Ralstonia solanacearum PSI07 0.65 RPSI07_RS10495 Nif3-like dinuclear metal center hexameric protein 0.57 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase low > 81
Ralstonia solanacearum GMI1000 0.64 RS_RS14685 Nif3-like dinuclear metal center hexameric protein 0.57 RS_RS01610 D-alanyl-D-alanine carboxypeptidase low > 80
Ralstonia solanacearum IBSBF1503 0.64 RALBFv3_RS06740 Nif3-like dinuclear metal center hexameric protein 0.56 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase low > 76
Ralstonia solanacearum UW163 0.64 UW163_RS06875 Nif3-like dinuclear metal center hexameric protein 0.56 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase — —
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS18835 Nif3-like dinuclear metal center hexameric protein 0.58 RR42_RS01680 cytochrome C550 low > 128
Herbaspirillum seropedicae SmR1 0.58 HSERO_RS20255 metal-binding protein 0.49 HSERO_RS21530 cytochrome C550 low > 78
Castellaniella sp019104865 MT123 0.55 ABCV34_RS12645 Nif3-like dinuclear metal center hexameric protein 0.43 ABCV34_RS13340 D-alanyl-D-alanine carboxypeptidase family protein low > 48
Dechlorosoma suillum PS 0.54 Dsui_1427 dinuclear metal center protein, YbgI/SA1388 family 0.48 Dsui_0899 D-alanyl-D-alanine carboxypeptidase low > 51
Shewanella sp. ANA-3 0.52 Shewana3_1758 hypothetical protein (RefSeq) 0.35 Shewana3_0991 penicillin-binding protein 6 (RefSeq) low > 73
Pseudomonas putida KT2440 0.52 PP_1302 putative metal-binding hydrolase-oxidase enzyme 0.36 PP_4803 D-alanyl-D-alanine carboxypeptidase low > 96
Shewanella oneidensis MR-1 0.52 SO2621 conserved hypothetical protein TIGR00486 (NCBI ptt file) 0.35 SO1164 dacA-1 D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) — —
Pseudomonas stutzeri RCH2 0.51 Psest_3295 dinuclear metal center protein, YbgI/SA1388 family 0.39 Psest_0516 D-alanyl-D-alanine carboxypeptidase low > 67
Hydrogenophaga sp. GW460-11-11-14-LB1 0.51 GFF1298 FIG137478: Hypothetical protein YbgI 0.42 GFF1806 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 90
Pseudomonas fluorescens FW300-N2E3 0.51 AO353_05085 metal-binding protein 0.37 AO353_06455 D-alanyl-D-alanine carboxypeptidase low > 101
Pseudomonas fluorescens FW300-N2E2 0.51 Pf6N2E2_5256 FIG137478: Hypothetical protein YbgI 0.36 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 103
Pseudomonas sp. S08-1 0.51 OH686_08455 GTP cyclohydrolase 1 type 2-related YbgI 0.36 OH686_09300 D-alanyl-D-alanine carboxypeptidase low > 80
Shewanella loihica PV-4 0.51 Shew_1572 hypothetical protein (RefSeq) 0.34 Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Alteromonas macleodii MIT1002 0.51 MIT1002_01972 metal-binding protein 0.35 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor — —
Pseudomonas fluorescens FW300-N2C3 0.51 AO356_16660 metal-binding protein 0.37 AO356_15330 D-alanyl-D-alanine carboxypeptidase 0.26 14
Pseudomonas sp. RS175 0.51 PFR28_00192 GTP cyclohydrolase 1 type 2 0.37 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC low > 88
Pseudomonas fluorescens GW456-L13 0.50 PfGW456L13_4997 FIG137478: Hypothetical protein YbgI 0.36 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas simiae WCS417 0.50 PS417_03710 metal-binding protein 0.37 PS417_24705 D-alanyl-D-alanine carboxypeptidase low > 88
Shewanella amazonensis SB2B 0.49 Sama_2050 hypothetical protein (RefSeq) 0.34 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Pseudomonas fluorescens SBW25 0.49 PFLU_RS03760 Nif3-like dinuclear metal center hexameric protein 0.37 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase low > 109
Pseudomonas fluorescens SBW25-INTG 0.49 PFLU_RS03760 Nif3-like dinuclear metal center hexameric protein 0.37 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase low > 109
Pseudomonas syringae pv. syringae B728a 0.49 Psyr_4129 Protein of unknown function DUF34 0.36 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.49 Psyr_4129 Protein of unknown function DUF34 0.36 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 low > 86
Rahnella sp. WP5 0.48 EX31_RS23375 type 2 GTP cyclohydrolase I 0.34 EX31_RS09695 D-alanyl-D-alanine carboxypeptidase low > 89
Serratia liquefaciens MT49 0.48 IAI46_06210 type 2 GTP cyclohydrolase I 0.33 IAI46_13850 serine-type D-Ala-D-Ala carboxypeptidase DacD low > 86
Erwinia tracheiphila SCR3 0.48 LU632_RS16150 type 2 GTP cyclohydrolase I 0.32 LU632_RS16390 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 74
Enterobacter sp. TBS_079 0.48 MPMX20_01344 GTP cyclohydrolase 1 type 2 0.35 MPMX20_01477 D-alanyl-D-alanine carboxypeptidase DacC low > 85
Vibrio cholerae E7946 ATCC 55056 0.48 CSW01_10460 Nif3-like dinuclear metal center hexameric protein 0.34 CSW01_04845 D-alanyl-D-alanine carboxypeptidase low > 62
Marinobacter adhaerens HP15 0.48 HP15_2426 NGG1p interacting factor 3, NIF3 0.39 HP15_608 serine-type D-Ala-D-Ala carboxypeptidase — —
Pectobacterium carotovorum WPP14 0.47 HER17_RS14990 type 2 GTP cyclohydrolase I 0.34 HER17_RS12545 serine hydrolase low > 75
Enterobacter asburiae PDN3 0.47 EX28DRAFT_2277 dinuclear metal center protein, YbgI/SA1388 family 0.35 EX28DRAFT_2127 D-alanyl-D-alanine carboxypeptidase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF4615 FIG137478: Hypothetical protein YbgI 0.32 GFF744 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 78
Escherichia coli Nissle 1917 0.47 ECOLIN_RS03800 radiation resistance protein YbgI 0.35 ECOLIN_RS04460 serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECOR38 0.47 HEPCGN_01200 ybgI radiation resistance protein YbgI 0.35 HEPCGN_01990 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 87
Escherichia coli ECRC101 0.47 MCAODC_26230 ybgI radiation resistance protein YbgI 0.35 MCAODC_25255 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 87
Escherichia coli ECRC100 0.47 OKFHMN_07010 ybgI radiation resistance protein YbgI 0.35 OKFHMN_06040 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 80
Escherichia coli ECOR27 0.47 NOLOHH_23395 ybgI radiation resistance protein YbgI 0.35 NOLOHH_22410 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.47 OHPLBJKB_03007 GTP cyclohydrolase 1 type 2 0.36 OHPLBJKB_02871 D-alanyl-D-alanine carboxypeptidase DacC low > 73
Escherichia coli ECRC98 0.47 JDDGAC_10665 ybgI radiation resistance protein YbgI 0.35 JDDGAC_09675 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 86
Escherichia coli ECRC62 0.47 BNILDI_21390 ybgI radiation resistance protein YbgI 0.35 BNILDI_20670 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 75
Escherichia coli ECRC102 0.47 NIAGMN_05065 ybgI radiation resistance protein YbgI 0.35 NIAGMN_04085 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia fergusonii Becca 0.47 EFB2_03393 GTP cyclohydrolase 1 type 2 0.35 EFB2_03267 D-alanyl-D-alanine carboxypeptidase DacC low > 86
Escherichia coli ECRC99 0.47 KEDOAH_20955 ybgI radiation resistance protein YbgI 0.35 KEDOAH_21870 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli BW25113 0.47 b0710 ybgI conserved metal-binding protein (NCBI) 0.36 b0839 dacC D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) low > 76
Escherichia coli BL21 0.47 ECD_00670 NIF3 family metal-binding protein 0.36 ECD_00806 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a low > 61
Klebsiella michiganensis M5al 0.46 BWI76_RS08345 Nif3-like dinuclear metal center protein 0.33 BWI76_RS09145 serine-type D-Ala-D-Ala carboxypeptidase low > 92
Variovorax sp. SCN45 0.46 GFF5367 GTP cyclohydrolase 1 type 2 homolog YbgI 0.43 GFF3627 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.50 90
Pantoea sp. MT58 0.45 IAI47_13810 type 2 GTP cyclohydrolase I 0.34 IAI47_13090 serine hydrolase low > 76
Dickeya dadantii 3937 0.45 DDA3937_RS06410 type 2 GTP cyclohydrolase I 0.34 DDA3937_RS09420 serine hydrolase low > 74
Acidovorax sp. GW101-3H11 0.44 Ac3H11_4745 FIG137478: Hypothetical protein YbgI 0.42 Ac3H11_2142 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Dickeya dianthicola 67-19 0.43 HGI48_RS06455 type 2 GTP cyclohydrolase I 0.35 HGI48_RS09435 serine hydrolase low > 71
Dickeya dianthicola ME23 0.43 DZA65_RS06800 type 2 GTP cyclohydrolase I 0.34 DZA65_RS09745 D-alanyl-D-alanine carboxypeptidase low > 75
Variovorax sp. OAS795 0.43 ABID97_RS23060 Nif3-like dinuclear metal center hexameric protein 0.43 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein low > 91
Acinetobacter radioresistens SK82 0.38 MPMX26_00997 GTP cyclohydrolase 1 type 2 0.36 MPMX26_01051 D-alanyl-D-alanine carboxypeptidase DacA low > 36

Not shown: 3 genomes with orthologs for QEN71_RS27790 only; 20 genomes with orthologs for QEN71_RS01300 only