Conservation of cofitness between Psyr_0025 and Psyr_4852 in Pseudomonas syringae pv. syringae B728a

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0025 shikimate dehydrogenase 1.0 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.73 2
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0025 shikimate dehydrogenase 1.00 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.59 39
Pseudomonas simiae WCS417 0.83 PS417_00125 shikimate dehydrogenase 0.95 PS417_27040 3-phosphoglycerate dehydrogenase — —
Pseudomonas fluorescens FW300-N1B4 0.83 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.94 Pf1N1B4_2272 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.47 50
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.94 PfGW456L13_943 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.76 32
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_10670 shikimate dehydrogenase 0.94 AO353_08510 3-phosphoglycerate dehydrogenase 0.74 16
Pseudomonas sp. RS175 0.81 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.94 PFR28_04842 D-3-phosphoglycerate dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS00120 shikimate dehydrogenase 0.95 PFLU_RS28695 phosphoglycerate dehydrogenase — —
Pseudomonas fluorescens SBW25 0.81 PFLU_RS00120 shikimate dehydrogenase 0.95 PFLU_RS28695 phosphoglycerate dehydrogenase — —
Pseudomonas fluorescens FW300-N2C3 0.81 AO356_11315 shikimate dehydrogenase 0.94 AO356_10300 3-phosphoglycerate dehydrogenase 0.43 63
Pseudomonas fluorescens FW300-N2E2 0.81 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.95 Pf6N2E2_3932 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) — —
Pseudomonas putida KT2440 0.77 PP_0074 shikimate 5-dehydrogenase 0.93 PP_5155 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase — —
Pseudomonas sp. S08-1 0.75 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.90 OH686_11280 D-3-phosphoglycerate dehydrogenase low > 80
Pseudomonas stutzeri RCH2 0.73 Psest_0029 shikimate 5-dehydrogenase 0.89 Psest_3873 Phosphoglycerate dehydrogenase and related dehydrogenases — —
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_00280 shikimate dehydrogenase 0.64 CSW01_12555 phosphoglycerate dehydrogenase low > 62
Shewanella sp. ANA-3 0.53 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.69 Shewana3_3416 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.85 69
Marinobacter adhaerens HP15 0.52 HP15_3750 shikimate dehydrogenase 0.77 HP15_2554 D-3-phosphoglycerate dehydrogenase-like protein — —
Shewanella loihica PV-4 0.51 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.69 Shew_3196 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.82 19
Shewanella oneidensis MR-1 0.50 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.69 SO0862 serA D-3-phosphoglycerate dehydrogenase (NCBI ptt file) low > 76
Escherichia coli BL21 0.49 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.67 ECD_02744 D-3-phosphoglycerate dehydrogenase 0.58 29
Escherichia coli BW25113 0.49 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.67 b2913 serA D-3-phosphoglycerate dehydrogenase (NCBI) 0.90 43
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.67 OHPLBJKB_00803 D-3-phosphoglycerate dehydrogenase low > 73
Escherichia coli Nissle 1917 0.49 ECOLIN_RS18840 shikimate dehydrogenase 0.67 ECOLIN_RS16210 phosphoglycerate dehydrogenase 0.81 10
Escherichia coli ECOR27 0.49 NOLOHH_09355 aroE shikimate dehydrogenase 0.67 NOLOHH_11370 serA phosphoglycerate dehydrogenase 0.87 32
Escherichia coli ECRC62 0.49 BNILDI_02165 aroE shikimate dehydrogenase 0.67 BNILDI_09905 serA phosphoglycerate dehydrogenase 0.89 64
Escherichia coli ECRC101 0.49 MCAODC_08085 aroE shikimate dehydrogenase 0.67 MCAODC_09980 serA phosphoglycerate dehydrogenase 0.74 74
Escherichia coli ECRC102 0.49 NIAGMN_15325 aroE shikimate dehydrogenase 0.67 NIAGMN_17225 serA phosphoglycerate dehydrogenase — —
Escherichia coli ECRC100 0.49 OKFHMN_17565 aroE shikimate dehydrogenase 0.67 OKFHMN_19460 serA phosphoglycerate dehydrogenase 0.95 30
Escherichia coli ECRC98 0.49 JDDGAC_21185 aroE shikimate dehydrogenase 0.67 JDDGAC_23100 serA phosphoglycerate dehydrogenase 0.90 3
Escherichia coli ECRC99 0.49 KEDOAH_10585 aroE shikimate dehydrogenase 0.67 KEDOAH_08680 serA phosphoglycerate dehydrogenase — —
Pantoea sp. MT58 0.49 IAI47_02315 shikimate dehydrogenase 0.66 IAI47_03725 phosphoglycerate dehydrogenase — —
Escherichia fergusonii Becca 0.48 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.67 EFB2_00990 D-3-phosphoglycerate dehydrogenase low > 86
Escherichia coli ECOR38 0.47 HEPCGN_16385 aroE shikimate dehydrogenase 0.67 HEPCGN_18760 serA phosphoglycerate dehydrogenase 0.81 38
Dickeya dianthicola ME23 0.47 DZA65_RS20315 shikimate dehydrogenase 0.65 DZA65_RS19540 phosphoglycerate dehydrogenase — —
Klebsiella michiganensis M5al 0.47 BWI76_RS25645 shikimate dehydrogenase 0.68 BWI76_RS23920 D-3-phosphoglycerate dehydrogenase 0.71 58
Shewanella amazonensis SB2B 0.47 Sama_0052 shikimate dehydrogenase (RefSeq) 0.69 Sama_2949 D-3-phosphoglycerate dehydrogenase (RefSeq) low > 62
Enterobacter sp. TBS_079 0.47 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.67 MPMX20_03771 D-3-phosphoglycerate dehydrogenase 0.85 38
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.67 GFF3013 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) low > 78
Dickeya dianthicola 67-19 0.46 HGI48_RS19190 shikimate dehydrogenase 0.65 HGI48_RS18400 phosphoglycerate dehydrogenase — —
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS17645 shikimate dehydrogenase 0.47 RR42_RS27010 D-3-phosphoglycerate dehydrogenase low > 128
Dickeya dadantii 3937 0.46 DDA3937_RS19100 shikimate dehydrogenase 0.65 DDA3937_RS18480 phosphoglycerate dehydrogenase — —
Pectobacterium carotovorum WPP14 0.46 HER17_RS02250 shikimate dehydrogenase 0.65 HER17_RS02725 phosphoglycerate dehydrogenase 0.93 29
Serratia liquefaciens MT49 0.46 IAI46_23240 shikimate dehydrogenase 0.67 IAI46_20900 phosphoglycerate dehydrogenase 0.62 30
Enterobacter asburiae PDN3 0.46 EX28DRAFT_0046 shikimate dehydrogenase 0.67 EX28DRAFT_2965 Phosphoglycerate dehydrogenase and related dehydrogenases — —
Erwinia tracheiphila SCR3 0.44 LU632_RS22445 aroE shikimate dehydrogenase 0.67 LU632_RS05855 serA phosphoglycerate dehydrogenase low > 74
Rahnella sp. WP5 0.44 EX31_RS15950 shikimate dehydrogenase 0.66 EX31_RS21470 phosphoglycerate dehydrogenase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF5226 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.75 GFF149 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) low > 90
Castellaniella sp019104865 MT123 0.40 ABCV34_RS11620 shikimate dehydrogenase 0.50 ABCV34_RS15150 phosphoglycerate dehydrogenase — —
Acidovorax sp. GW101-3H11 0.39 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.79 Ac3H11_4790 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) low > 79
Alteromonas macleodii MIT1002 0.37 MIT1002_00029 Shikimate dehydrogenase 0.68 MIT1002_02993 D-3-phosphoglycerate dehydrogenase — —
Variovorax sp. SCN45 0.37 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.78 GFF2538 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) low > 127
Acinetobacter radioresistens SK82 0.35 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.69 MPMX26_02773 D-3-phosphoglycerate dehydrogenase low > 36
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.65 Xcc-8004.2931.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.83 23
Variovorax sp. OAS795 0.34 ABID97_RS06300 shikimate dehydrogenase 0.80 ABID97_RS07235 phosphoglycerate dehydrogenase — —
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS14985 shikimate dehydrogenase 0.68 ABZR86_RS09635 phosphoglycerate dehydrogenase 0.95 36
Rhodanobacter denitrificans MT42 0.33 LRK55_RS08360 shikimate dehydrogenase 0.67 LRK55_RS02935 phosphoglycerate dehydrogenase low > 63
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS08595 shikimate dehydrogenase 0.67 LRK54_RS03185 phosphoglycerate dehydrogenase low > 59
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_15365 aroE shikimate dehydrogenase 0.66 OKGIIK_10055 serA phosphoglycerate dehydrogenase 0.66 12
Lysobacter sp. OAE881 0.31 ABIE51_RS01815 shikimate dehydrogenase 0.62 ABIE51_RS13245 phosphoglycerate dehydrogenase 0.67 48
Kangiella aquimarina DSM 16071 0.27 B158DRAFT_0259 shikimate 5-dehydrogenase 0.65 B158DRAFT_0518 Phosphoglycerate dehydrogenase and related dehydrogenases low > 40
Azospirillum brasilense Sp245 0.20 AZOBR_RS01765 shikimate 5-dehydrogenase 0.59 AZOBR_RS10940 3-phosphoglycerate dehydrogenase — —
Rhodospirillum rubrum S1H 0.19 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) 0.58 Rru_A2456 Phosphoglycerate dehydrogenase (NCBI) — —
Bosea sp. OAE506 0.19 ABIE41_RS04650 shikimate dehydrogenase 0.55 ABIE41_RS08410 phosphoglycerate dehydrogenase — —
Rhizobium sp. OAE497 0.19 ABIE40_RS19250 shikimate dehydrogenase 0.59 ABIE40_RS30040 phosphoglycerate dehydrogenase — —
Azospirillum sp. SherDot2 0.18 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) 0.60 MPMX19_00753 D-3-phosphoglycerate dehydrogenase — —

Not shown: 27 genomes with orthologs for Psyr_0025 only; 1 genomes with orthologs for Psyr_4852 only