Conservation of cofitness between Psyr_4754 and Psyr_3856 in Pseudomonas syringae pv. syringae B728a

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 1.0 Psyr_3856 Helicase c2 0.27 8
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 1.00 Psyr_3856 Helicase c2 low > 86
Pseudomonas stutzeri RCH2 0.73 Psest_0255 RNA methyltransferase, RsmD family 0.88 Psest_2857 Rad3-related DNA helicases — —
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_4579 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.93 Pf6N2E2_2942 ATP-dependent helicase DinG/Rad3 low > 103
Pseudomonas sp. S08-1 0.72 OH686_14220 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.89 OH686_04830 ATP-dependent helicase DinG/Rad3 low > 80
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_2320 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.92 Pf1N1B4_3194 ATP-dependent helicase DinG/Rad3 — —
Pseudomonas sp. RS175 0.71 PFR28_04262 Ribosomal RNA small subunit methyltransferase D 0.93 PFR28_00520 ATP-dependent DNA helicase DinG low > 88
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_13320 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.93 AO356_05425 ATP-dependent DNA helicase DinG low > 104
Pseudomonas fluorescens FW300-N2E3 0.71 AO353_08265 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.93 AO353_17020 ATP-dependent DNA helicase DinG low > 101
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.93 PFLU_RS06540 ATP-dependent DNA helicase DinG low > 109
Pseudomonas fluorescens SBW25 0.71 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.93 PFLU_RS06540 ATP-dependent DNA helicase DinG low > 109
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_990 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.93 PfGW456L13_4624 ATP-dependent helicase DinG/Rad3 low > 87
Pseudomonas simiae WCS417 0.70 PS417_26825 16S rRNA methyltransferase 0.93 PS417_06510 ATP-dependent DNA helicase DinG — —
Pseudomonas putida KT2440 0.68 PP_5114 putative adenine methyltransferase 0.88 PP_1125 putative Helicase low > 96
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_00238 Ribosomal RNA small subunit methyltransferase D 0.22 OHPLBJKB_02914 putative ATP-dependent helicase DinG low > 73
Rahnella sp. WP5 0.48 EX31_RS14835 16S rRNA (guanine(966)-N(2))-methyltransferase 0.20 EX31_RS19020 ATP-dependent DNA helicase DinG low > 89
Dickeya dadantii 3937 0.48 DDA3937_RS00630 16S rRNA (guanine(966)-N(2))-methyltransferase 0.21 DDA3937_RS08765 ATP-dependent DNA helicase DinG low > 74
Escherichia coli ECOR38 0.48 HEPCGN_15525 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.22 HEPCGN_01765 dinG ATP-dependent DNA helicase DinG low > 87
Dickeya dianthicola 67-19 0.48 HGI48_RS20760 16S rRNA (guanine(966)-N(2))-methyltransferase 0.21 HGI48_RS08850 ATP-dependent DNA helicase DinG low > 71
Escherichia fergusonii Becca 0.48 EFB2_00351 Ribosomal RNA small subunit methyltransferase D 0.22 EFB2_03306 ATP-dependent DNA helicase DinG low > 86
Pectobacterium carotovorum WPP14 0.48 HER17_RS00465 16S rRNA (guanine(966)-N(2))-methyltransferase 0.21 HER17_RS13230 ATP-dependent DNA helicase DinG low > 75
Escherichia coli ECRC62 0.48 BNILDI_03015 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.22 BNILDI_20910 dinG ATP-dependent DNA helicase DinG low > 75
Escherichia coli BW25113 0.48 b3465 yhhF predicted methyltransferase (NCBI) 0.22 b0799 dinG ATP-dependent DNA helicase (NCBI) low > 76
Escherichia coli Nissle 1917 0.48 ECOLIN_RS19815 16S rRNA (guanine(966)-N(2))-methyltransferase 0.22 ECOLIN_RS04255 ATP-dependent DNA helicase DinG — —
Escherichia coli ECOR27 0.48 NOLOHH_08500 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.22 NOLOHH_22630 dinG ATP-dependent DNA helicase DinG low > 75
Escherichia coli ECRC102 0.48 NIAGMN_14465 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.22 NIAGMN_04325 dinG ATP-dependent DNA helicase DinG — —
Escherichia coli ECRC99 0.48 KEDOAH_11445 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.22 KEDOAH_21630 dinG ATP-dependent DNA helicase DinG — —
Escherichia coli BL21 0.48 ECD_03314 16S rRNA m(2)G966 methyltransferase, SAM-dependent 0.22 ECD_00766 ATP-dependent DNA helicase low > 61
Escherichia coli ECRC100 0.48 OKFHMN_16695 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.22 OKFHMN_06280 dinG ATP-dependent DNA helicase DinG low > 80
Serratia liquefaciens MT49 0.48 IAI46_00920 16S rRNA (guanine(966)-N(2))-methyltransferase 0.20 IAI46_07445 ATP-dependent DNA helicase DinG low > 86
Escherichia coli ECRC98 0.48 JDDGAC_20325 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.22 JDDGAC_09915 dinG ATP-dependent DNA helicase DinG low > 86
Escherichia coli ECRC101 0.48 MCAODC_07225 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.22 MCAODC_25495 dinG ATP-dependent DNA helicase DinG low > 87
Dickeya dianthicola ME23 0.48 DZA65_RS21770 16S rRNA (guanine(966)-N(2))-methyltransferase 0.21 DZA65_RS09155 ATP-dependent DNA helicase DinG low > 75
Marinobacter adhaerens HP15 0.46 HP15_3491 conserved hypothetical protein 0.45 HP15_1856 helicase c2 low > 73
Shewanella sp. ANA-3 0.46 Shewana3_3973 putative methyltransferase (RefSeq) 0.34 Shewana3_2630 dinG ATP-dependent DNA helicase DinG (RefSeq) low > 73
Erwinia tracheiphila SCR3 0.45 LU632_RS19285 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.20 LU632_RS09400 dinG ATP-dependent DNA helicase DinG low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF540 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) 0.22 GFF697 ATP-dependent helicase DinG/Rad3 low > 78
Vibrio cholerae E7946 ATCC 55056 0.44 CSW01_00740 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.30 CSW01_09290 ATP-dependent DNA helicase DinG low > 62
Klebsiella michiganensis M5al 0.44 BWI76_RS26405 16S rRNA (guanine(966)-N(2))-methyltransferase 0.22 BWI76_RS08920 ATP-dependent DNA helicase DinG low > 92
Shewanella loihica PV-4 0.44 Shew_3607 putative methyltransferase (RefSeq) 0.33 Shew_2483 dinG ATP-dependent DNA helicase DinG (RefSeq) low > 60
Pantoea sp. MT58 0.44 IAI47_01535 16S rRNA (guanine(966)-N(2))-methyltransferase 0.20 IAI47_13295 ATP-dependent DNA helicase DinG low > 76
Enterobacter sp. TBS_079 0.44 MPMX20_04342 Ribosomal RNA small subunit methyltransferase D 0.22 MPMX20_01426 ATP-dependent DNA helicase DinG low > 85
Shewanella oneidensis MR-1 0.43 SO4587 conserved hypothetical protein TIGR00095 (NCBI ptt file) 0.34 SO1819 dinG ATP-dependent helicase DinG (NCBI ptt file) low > 76
Enterobacter asburiae PDN3 0.43 EX28DRAFT_4299 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.22 EX28DRAFT_2193 Rad3-related DNA helicases low > 76
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_02580 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.29 OKGIIK_12870 dinG ATP-dependent DNA helicase DinG low > 52
Shewanella amazonensis SB2B 0.42 Sama_3469 hypothetical protein (RefSeq) 0.32 Sama_1249 dinG ATP-dependent DNA helicase DinG (RefSeq) low > 62
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS19990 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.30 ABZR86_RS16845 ATP-dependent DNA helicase DinG low > 74
Rhodanobacter denitrificans MT42 0.42 LRK55_RS13080 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.29 LRK55_RS10710 ATP-dependent DNA helicase DinG low > 63
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS13340 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.29 LRK54_RS11005 ATP-dependent DNA helicase DinG low > 59
Kangiella aquimarina DSM 16071 0.39 B158DRAFT_0443 16S rRNA m(2)G-966 methyltransferase (EC 2.1.1.52) 0.15 B158DRAFT_2492 Rad3-related DNA helicases low > 40
Alteromonas macleodii MIT1002 0.37 MIT1002_03683 Ribosomal RNA small subunit methyltransferase D 0.14 MIT1002_02593 putative ATP-dependent helicase DinG low > 70
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_01968 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.14 H281DRAFT_00533 ATP-dependent DNA helicase DinG low > 103
Paraburkholderia sabiae LMG 24235 0.34 QEN71_RS01665 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.14 QEN71_RS06060 ATP-dependent DNA helicase low > 153
Paraburkholderia graminis OAS925 0.33 ABIE53_000701 16S rRNA (guanine966-N2)-methyltransferase 0.09 ABIE53_002724 ATP-dependent DNA helicase DinG low > 113
Herbaspirillum seropedicae SmR1 0.30 HSERO_RS20695 methyltransferase 0.09 HSERO_RS14855 helicase low > 78
Acidovorax sp. GW101-3H11 0.30 Ac3H11_3873 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.27 Ac3H11_4422 ATP-dependent helicase DinG/Rad3 — —
Caulobacter crescentus NA1000 Δfur 0.29 CCNA_00227 methyltransferase 0.05 CCNA_02118 ATP-dependent helicase, dinG family low > 67
Cupriavidus basilensis FW507-4G11 0.29 RR42_RS01990 methyltransferase 0.15 RR42_RS07580 helicase low > 128
Caulobacter crescentus NA1000 0.29 CCNA_00227 methyltransferase 0.05 CCNA_02118 ATP-dependent helicase, dinG family low > 66
Hydrogenophaga sp. GW460-11-11-14-LB1 0.28 GFF817 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.26 GFF2695 ATP-dependent helicase DinG/Rad3 low > 90
Ralstonia solanacearum PSI07 0.28 RPSI07_RS22230 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.09 RPSI07_RS15960 ATP-dependent DNA helicase — —
Ralstonia solanacearum GMI1000 0.28 RS_RS01920 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.09 RS_RS08195 ATP-dependent DNA helicase low > 80

Not shown: 22 genomes with orthologs for Psyr_4754 only; 2 genomes with orthologs for Psyr_3856 only