| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_0358 | | Diaminopimelate-binding protein / L-cystine-binding protein | 1.0 | Psyr_3585 | | Sua5/YciO/YrdC/YwlC | 0.32 | 17 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_0358 | | Diaminopimelate-binding protein / L-cystine-binding protein | 1.00 | Psyr_3585 | | Sua5/YciO/YrdC/YwlC | low | > 86 |
| Pseudomonas fluorescens GW456-L13 | 0.78 | PfGW456L13_444 | | Cystine ABC transporter, periplasmic cystine-binding protein FliY | 0.80 | PfGW456L13_4404 | | Hypothetical YciO protein, TsaC/YrdC paralog | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.77 | Pf1N1B4_1693 | | Cystine ABC transporter, periplasmic cystine-binding protein FliY | 0.82 | Pf1N1B4_3552 | | Hypothetical YciO protein, TsaC/YrdC paralog | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.74 | AO353_11675 | | cystine transporter subunit | 0.82 | AO353_18525 | | hypothetical protein | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.74 | Pf6N2E2_3919 | | Cystine ABC transporter, periplasmic cystine-binding protein FliY | 0.83 | Pf6N2E2_5626 | | Hypothetical YciO protein, TsaC/YrdC paralog | low | > 103 |
| Pseudomonas fluorescens SBW25 | 0.74 | PFLU_RS01215 | | cystine ABC transporter substrate-binding protein | 0.81 | PFLU_RS23910 | | threonylcarbamoyl-AMP synthase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.74 | PFLU_RS01215 | | cystine ABC transporter substrate-binding protein | 0.81 | PFLU_RS23910 | | threonylcarbamoyl-AMP synthase | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.74 | AO356_10235 | | cystine transporter subunit | 0.82 | AO356_18500 | | hypothetical protein | low | > 104 |
| Pseudomonas sp. RS175 | 0.73 | PFR28_04855 | | L-cystine-binding protein FliY | 0.83 | PFR28_03318 | | putative protein YciO | low | > 88 |
| Pseudomonas simiae WCS417 | 0.73 | PS417_01105 | | cystine transporter subunit | 0.80 | PS417_22270 | | hypothetical protein | low | > 88 |
| Pseudomonas putida KT2440 | 0.70 | PP_0227 | | periplasmic cystine-binding protein | 0.77 | PP_4499 | | putative maturation enzyme | 0.16 | 35 |
| Pseudomonas sp. S08-1 | 0.69 | OH686_18905 | | L-cystine ABC transporter (wide substrate range), substrate-binding protein FliY | 0.82 | OH686_20800 | | tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family | low | > 80 |
| Serratia liquefaciens MT49 | 0.66 | IAI46_15770 | | cystine ABC transporter substrate-binding protein | 0.58 | IAI46_14010 | | threonylcarbamoyl-AMP synthase | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.66 | GFF1692 | | Cystine ABC transporter, periplasmic cystine-binding protein FliY | 0.56 | GFF2720 | | Hypothetical YciO protein, TsaC/YrdC paralog | low | > 78 |
| Enterobacter sp. TBS_079 | 0.66 | MPMX20_02845 | | L-cystine-binding protein FliY | 0.58 | MPMX20_02508 | | putative protein YciO | low | > 85 |
| Klebsiella michiganensis M5al | 0.66 | BWI76_RS18365 | | cystine ABC transporter substrate-binding protein | 0.57 | BWI76_RS11870 | | hypothetical protein | low | > 92 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.66 | OHPLBJKB_01809 | | L-cystine-binding protein FliY | 0.57 | OHPLBJKB_02417 | | putative protein YciO | low | > 73 |
| Escherichia fergusonii Becca | 0.66 | EFB2_02025 | | L-cystine-binding protein FliY | 0.57 | EFB2_02660 | | putative protein YciO | low | > 86 |
| Escherichia coli ECRC99 | 0.65 | KEDOAH_02300 | tcyJ | cystine ABC transporter substrate-binding protein | 0.57 | KEDOAH_26110 | yciO | L-threonylcarbamoyladenylate synthase | — | — |
| Escherichia coli BW25113 | 0.65 | b1920 | fliY | cystine transporter subunit (NCBI) | 0.57 | b1267 | yciO | orf, hypothetical protein (VIMSS) | — | — |
| Enterobacter asburiae PDN3 | 0.65 | EX28DRAFT_0627 | | ABC-type amino acid transport/signal transduction systems, periplasmic component/domain | 0.58 | EX28DRAFT_0939 | | tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family | low | > 76 |
| Escherichia coli ECRC101 | 0.65 | MCAODC_19600 | tcyJ | cystine ABC transporter substrate-binding protein | 0.57 | MCAODC_15625 | yciO | L-threonylcarbamoyladenylate synthase | low | > 87 |
| Escherichia coli ECRC102 | 0.65 | NIAGMN_02260 | tcyJ | cystine ABC transporter substrate-binding protein | 0.57 | NIAGMN_26810 | yciO | L-threonylcarbamoyladenylate synthase | — | — |
| Escherichia coli ECOR38 | 0.65 | HEPCGN_04145 | tcyJ | cystine ABC transporter substrate-binding protein | 0.57 | HEPCGN_25550 | yciO | L-threonylcarbamoyladenylate synthase | low | > 87 |
| Escherichia coli ECOR27 | 0.65 | NOLOHH_16410 | tcyJ | cystine ABC transporter substrate-binding protein | 0.57 | NOLOHH_20300 | yciO | L-threonylcarbamoyladenylate synthase | low | > 75 |
| Escherichia coli ECRC100 | 0.65 | OKFHMN_25790 | tcyJ | cystine ABC transporter substrate-binding protein | 0.57 | OKFHMN_02640 | yciO | L-threonylcarbamoyladenylate synthase | low | > 80 |
| Escherichia coli ECRC98 | 0.65 | JDDGAC_00380 | tcyJ | cystine ABC transporter substrate-binding protein | 0.57 | JDDGAC_05185 | yciO | L-threonylcarbamoyladenylate synthase | low | > 86 |
| Escherichia coli ECRC62 | 0.65 | BNILDI_15200 | tcyJ | cystine ABC transporter substrate-binding protein | 0.57 | BNILDI_18450 | yciO | L-threonylcarbamoyladenylate synthase | low | > 75 |
| Escherichia coli Nissle 1917 | 0.65 | ECOLIN_RS10965 | | cystine ABC transporter substrate-binding protein | 0.57 | ECOLIN_RS07625 | | L-threonylcarbamoyladenylate synthase | — | — |
| Erwinia tracheiphila SCR3 | 0.64 | LU632_RS13770 | tcyJ | cystine ABC transporter substrate-binding protein | 0.55 | LU632_RS12745 | | threonylcarbamoyl-AMP synthase | low | > 74 |
| Pantoea sp. MT58 | 0.64 | IAI47_08175 | | cystine ABC transporter substrate-binding protein | 0.55 | IAI47_09200 | | threonylcarbamoyl-AMP synthase | low | > 76 |
| Rahnella sp. WP5 | 0.64 | EX31_RS09435 | | cystine ABC transporter substrate-binding protein | 0.58 | EX31_RS09945 | | threonylcarbamoyl-AMP synthase | low | > 89 |
| Herbaspirillum seropedicae SmR1 | 0.39 | HSERO_RS10775 | | cysteine ABC transporter substrate-binding protein | 0.54 | HSERO_RS16410 | | translation factor Sua5 | low | > 78 |
| Burkholderia phytofirmans PsJN | 0.38 | BPHYT_RS08560 | | cysteine ABC transporter substrate-binding protein | 0.53 | BPHYT_RS12635 | | translation factor Sua5 | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.37 | H281DRAFT_00742 | | amino acid ABC transporter substrate-binding protein, PAAT family | 0.54 | H281DRAFT_00505 | | tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.37 | ABIE53_001953 | | cystine transport system substrate-binding protein | 0.53 | ABIE53_002753 | | tRNA threonylcarbamoyl adenosine modification protein (Sua5/YciO/YrdC/YwlC family) | low | > 113 |
| Paraburkholderia sabiae LMG 24235 | 0.34 | QEN71_RS05410 | | amino acid ABC transporter substrate-binding protein | 0.54 | QEN71_RS05920 | | L-threonylcarbamoyladenylate synthase | low | > 153 |
| Cupriavidus basilensis FW507-4G11 | 0.34 | RR42_RS04395 | | cysteine ABC transporter substrate-binding protein | 0.55 | RR42_RS06230 | | hypothetical protein | low | > 128 |
| Castellaniella sp019104865 MT123 | 0.33 | ABCV34_RS15125 | | amino acid ABC transporter substrate-binding protein | 0.49 | ABCV34_RS15815 | | L-threonylcarbamoyladenylate synthase | low | > 48 |
| Dickeya dianthicola 67-19 | 0.32 | HGI48_RS01265 | | amino acid ABC transporter substrate-binding protein | 0.56 | HGI48_RS10495 | | threonylcarbamoyl-AMP synthase | low | > 71 |
| Dickeya dianthicola ME23 | 0.32 | DZA65_RS01310 | | amino acid ABC transporter substrate-binding protein | 0.56 | DZA65_RS10975 | | threonylcarbamoyl-AMP synthase | low | > 75 |
| Pectobacterium carotovorum WPP14 | 0.31 | HER17_RS20280 | | amino acid ABC transporter substrate-binding protein | 0.56 | HER17_RS10905 | | threonylcarbamoyl-AMP synthase | low | > 75 |
| Dickeya dadantii 3937 | 0.31 | DDA3937_RS01285 | | amino acid ABC transporter substrate-binding protein | 0.56 | DDA3937_RS10495 | | threonylcarbamoyl-AMP synthase | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.28 | CSW01_00050 | | amino acid ABC transporter substrate-binding protein | 0.59 | CSW01_05965 | | threonylcarbamoyl-AMP synthase | low | > 62 |
| Variovorax sp. SCN45 | 0.27 | GFF6405 | | ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) | 0.47 | GFF5789 | | YciO protein, TsaC/YrdC paralog | low | > 127 |
| Acidovorax sp. GW101-3H11 | 0.25 | Ac3H11_2555 | | ABC transporter for L-Histidine, periplasmic substrate-binding component 1 (from data) | 0.49 | Ac3H11_1753 | | TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA | low | > 79 |
| Ralstonia sp. UNC404CL21Col | 0.24 | ABZR87_RS00675 | | glutamine ABC transporter substrate-binding protein | 0.56 | ABZR87_RS10525 | | L-threonylcarbamoyladenylate synthase | low | > 80 |
| Ralstonia solanacearum UW163 | 0.24 | UW163_RS22990 | | amino acid ABC transporter substrate-binding protein | 0.56 | UW163_RS12340 | | threonylcarbamoyl-AMP synthase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.24 | RALBFv3_RS22445 | | amino acid ABC transporter substrate-binding protein | 0.56 | RALBFv3_RS14870 | | threonylcarbamoyl-AMP synthase | low | > 76 |
| Ralstonia solanacearum PSI07 | 0.23 | RPSI07_RS01835 | | amino acid ABC transporter substrate-binding protein | 0.56 | RPSI07_RS18490 | | threonylcarbamoyl-AMP synthase | — | — |
| Ralstonia solanacearum GMI1000 | 0.21 | RS_RS19470 | | amino acid ABC transporter substrate-binding protein | 0.56 | RS_RS05680 | | threonylcarbamoyl-AMP synthase | low | > 80 |
| Shewanella loihica PV-4 | 0.20 | Shew_3166 | | extracellular solute-binding protein (RefSeq) | 0.51 | Shew_2249 | | Sua5/YciO/YrdC/YwlC family protein (RefSeq) | low | > 60 |
| Shewanella sp. ANA-3 | 0.20 | Shewana3_0882 | | extracellular solute-binding protein (RefSeq) | 0.50 | Shewana3_1522 | | translation factor SUA5 (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.19 | SO1044 | | amino acid ABC transporter, periplasmic amino acid-binding protein (NCBI ptt file) | 0.50 | SO3016 | | Sua5/YciO/YrdC/YwlC family protein (NCBI ptt file) | 0.19 | 47 |
| Methanococcus maripaludis S2 | 0.18 | MMP_RS02910 | | ABC transporter substrate-binding protein | 0.17 | MMP_RS01035 | | threonylcarbamoyl-AMP synthase | — | — |
| Methanococcus maripaludis JJ | 0.18 | MMJJ_RS02165 | | ABC transporter substrate-binding protein | 0.15 | MMJJ_RS04460 | | L-threonylcarbamoyladenylate synthase | — | — |
| Synechococcus elongatus PCC 7942 | 0.16 | Synpcc7942_0076 | | extracellular solute-binding protein, family 3 | 0.35 | Synpcc7942_2350 | | translation factor SUA5 | 0.41 | 19 |
Not shown: 9 genomes with orthologs for Psyr_0358 only; 20 genomes with orthologs for Psyr_3585 only